RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 NMNAT3Q96T66 252 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 C11orf1Q9H5F2 150 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 WDR54Q9H977 334 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 RNF150Q9ULK6 438 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 DAPP1Q9UN19 280 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 MRPS18BQ9Y676 258 aaKnown RBP4.58□□□□□ -1.68
USP28-213ENST00000544967 TGIF2-C20orf24A0A0A6YYL0 155 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 IGHV5-51A0A0C4DH38 117 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 MEIS3P1A6NDR6 274 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 H0YL77 283 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 IGHMP01871 453 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 UMODP07911 640 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 NPSP0C0P6 89 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 ST6GAL1P15907 406 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 ARR3P36575 388 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 RBMXP38159 391 aaKnown RBP4.58□□□□□ -1.68
USP28-213ENST00000544967 HIST1H3AP68431 136 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 BAXQ07812 192 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 ZNF616Q08AN1 781 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 MORN2Q502X0 79 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 GLYATL3Q5SZD4 288 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 SLC18B1Q6NT16 456 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 OR4S1Q8NGB4 309 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 OR6K6Q8NGW6 343 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 OR14L1PQ8NHC6 308 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 ZNRF4Q8WWF5 429 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 C20orf24Q9BUV8 137 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 STRADBQ9C0K7 418 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 LYRM4Q9HD34 91 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 PNO1Q9NRX1 252 aaKnown RBP4.58□□□□□ -1.68
USP28-213ENST00000544967 LYRM2Q9NU23 88 aaPredicted RBP4.58□□□□□ -1.68
USP28-213ENST00000544967 KLHDC2Q9Y2U9 406 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 WSB1Q9Y6I7 421 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 CFAP54Q96N23 3096 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 CDC14CA4D256 554 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 WIPF3A6NGB9 483 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 CRYM-AS1A6NIL9 109 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 A8MVM7 634 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 TMEM238C9JI98 176 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 GEMIN2O14893 280 aaKnown RBP4.58□□□□□ -1.68
USP28-213ENST00000544967 ST8SIA3O43173 380 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 NME2P1O60361 137 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 ACTL6BO94805 426 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 NGFRP08138 427 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 CCL2P13500 99 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 ZNF43P17038 809 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 APOBEC3AP31941 199 aaPredicted RBP4.58□□□□□ -1.68
USP28-213ENST00000544967 SRP14P37108 136 aaKnown RBP4.58□□□□□ -1.68
USP28-213ENST00000544967 OR3A2P47893 321 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 RND3P61587 244 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 RPS15AP62244 130 aaKnown RBP4.58□□□□□ -1.68
USP28-213ENST00000544967 RPS16P62249 146 aaKnown RBP4.58□□□□□ -1.68
USP28-213ENST00000544967 FAM53BQ14153 422 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 ARSJQ5FYB0 599 aaPredicted RBP4.58□□□□□ -1.68
USP28-213ENST00000544967 ACTL10Q5JWF8 245 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 LEMD1Q68G75 181 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 RHBDD2Q6NTF9 364 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 MRPL14Q6P1L8 145 aaKnown RBP4.58□□□□□ -1.68
USP28-213ENST00000544967 CBLN3Q6UW01 205 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 PRSS57Q6UWY2 283 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 NUFIP2Q7Z417 695 aaKnown RBP4.58□□□□□ -1.68
USP28-213ENST00000544967 VN1R4Q7Z5H5 301 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 FAM185AQ8N0U4 392 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 GCNT2Q8N0V5 402 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 GBGT1Q8N5D6 347 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 CLDND2Q8NHS1 167 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 ZNF48Q96MX3 618 aaPredicted RBP4.58□□□□□ -1.68
USP28-213ENST00000544967 RTN4RQ9BZR6 473 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 ELL3Q9HB65 397 aaPredicted RBP4.58□□□□□ -1.68
USP28-213ENST00000544967 SDF2L1Q9HCN8 221 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 Q9N2K0 584 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 C14orf166Q9Y224 244 aaKnown RBP4.58□□□□□ -1.68
USP28-213ENST00000544967 R4GMQ9 66 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 PCNX2A6NKB5 2137 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 DUXBA0A1W2PPF3 345 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 NKX6-3A6NJ46 265 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 C21orf140B9A014 251 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 PFN1P07737 140 aaKnown RBP4.57□□□□□ -1.68
USP28-213ENST00000544967 ASAH2BP0C7U1 165 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 CDKN2AP42771 156 aaKnown RBP4.57□□□□□ -1.68
USP28-213ENST00000544967 GFERP55789 205 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 PPP1CAP62136 330 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 PAFAH1B2P68402 229 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 IGLV3-21P80748 117 aaPredicted RBP4.57□□□□□ -1.68
USP28-213ENST00000544967 EIF2B1Q14232 305 aaKnown RBP4.57□□□□□ -1.68
USP28-213ENST00000544967 PCK2Q16822 640 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 IAH1Q2TAA2 248 aaPredicted RBP4.57□□□□□ -1.68
USP28-213ENST00000544967 AADACL3Q5VUY0 350 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 FBXO42Q6P3S6 717 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 COX15Q7KZN9 410 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 YRDCQ86U90 279 aaKnown RBP4.57□□□□□ -1.68
USP28-213ENST00000544967 H1FOOQ8IZA3 346 aaPredicted RBP4.57□□□□□ -1.68
USP28-213ENST00000544967 OR5H2Q8NGV7 314 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 RP1P56715 2156 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 GLOD5A6NK44 160 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 H0YIG0 161 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 OR13C7P0DN81 318 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 HIST1H1DP16402 221 aaKnown RBP4.57□□□□□ -1.68
USP28-213ENST00000544967 SRPXP78539 464 aa4.57□□□□□ -1.68
USP28-213ENST00000544967 TOMM20LQ6UXN7 152 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms