RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 PI4KAP42356 2102 aa11.02□□□□□ -0.65
VPS52-218ENST00000482399 SUMO3P55854 103 aaPredicted RBP11.02□□□□□ -0.65
VPS52-218ENST00000482399 ERVFRD-1P60508 538 aa11.02□□□□□ -0.65
VPS52-218ENST00000482399 ERVS71-1P61550 626 aa11.02□□□□□ -0.65
VPS52-218ENST00000482399 PMP22Q01453 160 aa11.02□□□□□ -0.65
VPS52-218ENST00000482399 HGFACQ04756 655 aa11.02□□□□□ -0.65
VPS52-218ENST00000482399 MRPL21Q7Z2W9 205 aaKnown RBP11.02□□□□□ -0.65
VPS52-218ENST00000482399 ZDHHC8Q9ULC8 765 aa11.02□□□□□ -0.65
VPS52-218ENST00000482399 HDGFL3Q9Y3E1 203 aa11.02□□□□□ -0.65
VPS52-218ENST00000482399 AQP7P3A6NL99 342 aa11.02□□□□□ -0.65
VPS52-218ENST00000482399 PDCD6O75340 191 aa11.02□□□□□ -0.65
VPS52-218ENST00000482399 FUT3P21217 361 aa11.02□□□□□ -0.65
VPS52-218ENST00000482399 CARD18P57730 90 aa11.02□□□□□ -0.65
VPS52-218ENST00000482399 WDR5BQ86VZ2 330 aa11.02□□□□□ -0.65
VPS52-218ENST00000482399 OR1F12Q8NHA8 337 aa11.02□□□□□ -0.65
VPS52-218ENST00000482399 SDSLQ96GA7 329 aa11.02□□□□□ -0.65
VPS52-218ENST00000482399 IL36RNQ9UBH0 155 aa11.02□□□□□ -0.65
VPS52-218ENST00000482399 FRYLO94915 3013 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 IFNA10P01566 189 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 MMP7P09237 267 aaPredicted RBP11.01□□□□□ -0.65
VPS52-218ENST00000482399 ZNF92Q03936 586 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 SSX2Q16385 188 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 CYB5R2Q6BCY4 276 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 MRPL41Q8IXM3 137 aaKnown RBP11.01□□□□□ -0.65
VPS52-218ENST00000482399 WASF3Q9UPY6 502 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 TUSC2O75896 110 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 TRGC1P0CF51 173 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 CDX1P47902 265 aaPredicted RBP11.01□□□□□ -0.65
VPS52-218ENST00000482399 HLA-DRB3P79483 266 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 ENDOGQ14249 297 aaKnown RBP11.01□□□□□ -0.65
VPS52-218ENST00000482399 SLC25A45Q8N413 288 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 FAM89BQ8N5H3 189 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 BOD1Q96IK1 185 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 OR5B12Q96R08 314 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 PNRC2Q9NPJ4 139 aaKnown RBP11.01□□□□□ -0.65
VPS52-218ENST00000482399 TUBD1Q9UJT1 453 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 FREM1Q5H8C1 2179 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 ZNF816-ZNF321PA0A0X1KG74 233 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 CLDN1O95832 211 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 G0S2P27469 103 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 BATFQ16520 125 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 ZNF468Q5VIY5 522 aaPredicted RBP11.01□□□□□ -0.65
VPS52-218ENST00000482399 RHBDD2Q6NTF9 364 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 OR56B2PQ8NGI1 322 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 PSMF1Q92530 271 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 SPSB1Q96BD6 273 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 PACRGQ96M98 296 aaPredicted RBP11.01□□□□□ -0.65
VPS52-218ENST00000482399 SMIM7Q9BQ49 75 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 OR14J1Q9UGF5 321 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 RNF150Q9ULK6 438 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 HS3ST3B1Q9Y662 390 aa11.01□□□□□ -0.65
VPS52-218ENST00000482399 CNOT1A5YKK6 2376 aaKnown RBP11.01□□□□□ -0.65
VPS52-218ENST00000482399 IGKV1-27A0A075B6S5 117 aa11□□□□□ -0.65
VPS52-218ENST00000482399 HOXB1P14653 301 aaPredicted RBP11□□□□□ -0.65
VPS52-218ENST00000482399 IGFBP7Q16270 282 aa11□□□□□ -0.65
VPS52-218ENST00000482399 KHDC3LQ587J8 217 aa11□□□□□ -0.65
VPS52-218ENST00000482399 CALHM1Q8IU99 346 aa11□□□□□ -0.65
VPS52-218ENST00000482399 ADPRHL1Q8NDY3 354 aa11□□□□□ -0.65
VPS52-218ENST00000482399 CCDC54Q8NEL0 328 aa11□□□□□ -0.65
VPS52-218ENST00000482399 TMEM171Q8WVE6 324 aa11□□□□□ -0.65
VPS52-218ENST00000482399 LHX4Q969G2 390 aa11□□□□□ -0.65
VPS52-218ENST00000482399 GINS3Q9BRX5 216 aa11□□□□□ -0.65
VPS52-218ENST00000482399 RNF122Q9H9V4 155 aa11□□□□□ -0.65
VPS52-218ENST00000482399 SLC39A9Q9NUM3 307 aa11□□□□□ -0.65
VPS52-218ENST00000482399 ERRFI1Q9UJM3 462 aaPredicted RBP11□□□□□ -0.65
VPS52-218ENST00000482399 IGKV1-12A0A0C4DH73 117 aa11□□□□□ -0.65
VPS52-218ENST00000482399 A0A0J9YW62 118 aa11□□□□□ -0.65
VPS52-218ENST00000482399 HSFX4A0A1B0GTS1 333 aaPredicted RBP11□□□□□ -0.65
VPS52-218ENST00000482399 HSFX3A0A1B0GWH4 333 aaPredicted RBP11□□□□□ -0.65
VPS52-218ENST00000482399 C5orf49A4QMS7 147 aa11□□□□□ -0.65
VPS52-218ENST00000482399 BTBD17A6NE02 478 aa11□□□□□ -0.65
VPS52-218ENST00000482399 TRAPPC2LH3BP13 241 aa11□□□□□ -0.65
VPS52-218ENST00000482399 HIST1H2BKO60814 126 aa11□□□□□ -0.65
VPS52-218ENST00000482399 IGKV1D-12P01611 117 aa11□□□□□ -0.65
VPS52-218ENST00000482399 HIST1H2BJP06899 126 aa11□□□□□ -0.65
VPS52-218ENST00000482399 FOLR2P14207 255 aa11□□□□□ -0.65
VPS52-218ENST00000482399 HNF1AP20823 631 aa11□□□□□ -0.65
VPS52-218ENST00000482399 HIST1H2BOP23527 126 aa11□□□□□ -0.65
VPS52-218ENST00000482399 HIST1H2BBP33778 126 aa11□□□□□ -0.65
VPS52-218ENST00000482399 HIST1H2BDP58876 126 aa11□□□□□ -0.65
VPS52-218ENST00000482399 HIST1H2BCP62807 126 aa11□□□□□ -0.65
VPS52-218ENST00000482399 HIST2H2BEQ16778 126 aa11□□□□□ -0.65
VPS52-218ENST00000482399 SPINK9Q5DT21 86 aa11□□□□□ -0.65
VPS52-218ENST00000482399 WIPI1Q5MNZ9 446 aaPredicted RBP11□□□□□ -0.65
VPS52-218ENST00000482399 HIST2H2BFQ5QNW6 126 aaPredicted RBP11□□□□□ -0.65
VPS52-218ENST00000482399 SPATA46Q5T0L3 261 aa11□□□□□ -0.65
VPS52-218ENST00000482399 MKXQ8IYA7 352 aa11□□□□□ -0.65
VPS52-218ENST00000482399 ZNF441Q8N8Z8 693 aa11□□□□□ -0.65
VPS52-218ENST00000482399 OIT3Q8WWZ8 545 aa11□□□□□ -0.65
VPS52-218ENST00000482399 HIST1H2BHQ93079 126 aa11□□□□□ -0.65
VPS52-218ENST00000482399 LURAP1Q96LR2 239 aa11□□□□□ -0.65
VPS52-218ENST00000482399 HIST1H2BNQ99877 126 aa11□□□□□ -0.65
VPS52-218ENST00000482399 HIST1H2BMQ99879 126 aa11□□□□□ -0.65
VPS52-218ENST00000482399 SMOC1Q9H4F8 434 aa11□□□□□ -0.65
VPS52-218ENST00000482399 FBLN5Q9UBX5 448 aa11□□□□□ -0.65
VPS52-218ENST00000482399 OR5H1A6NKK0 313 aa10.99□□□□□ -0.65
VPS52-218ENST00000482399 C9J4A7 227 aa10.99□□□□□ -0.65
VPS52-218ENST00000482399 YKT6O15498 198 aa10.99□□□□□ -0.65
VPS52-218ENST00000482399 P04436 131 aa10.99□□□□□ -0.65
VPS52-218ENST00000482399 IL15RAQ13261 267 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms