RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 ZNF728P0DKX0 622 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 SRMP19623 302 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 SERPINA2P20848 420 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 DUSP1P28562 367 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 DLX6P56179 175 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 EDDM3AQ14507 147 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 ZNF273Q14593 569 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 NDUFA5Q16718 116 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 MIDNQ504T8 468 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 TMEM200BQ69YZ2 307 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 CD200R1LQ6Q8B3 271 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 BRD3OSQ6XYD6 125 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 LRRTM1Q86UE6 522 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 SPARTQ8N0X7 666 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 TMEM86BQ8N661 226 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 SIGLECL1Q8N7X8 197 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 OR4S1Q8NGB4 309 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 MUL1Q969V5 352 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 CHST6Q9GZX3 395 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 CST11Q9H112 138 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 PPA2Q9H2U2 334 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 GAL3ST2Q9H3Q3 398 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 HEXA-AS1Q9H8Q6 139 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 ING4Q9UNL4 249 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 ST3GAL6Q9Y274 331 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 STAB1Q9NY15 2570 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 IGHV3OR16-10A0A075B7F0 116 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 TRGV10A0A0A0MS01 117 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 A0A0G2JK05 382 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 RNF212BA8MTL3 300 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 RNASEK-C17orf49H0YIS7 233 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 CLPXO76031 633 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 VENTXO95231 258 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 GSTT2P0CG29 244 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 GSTT2BP0CG30 244 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 CD37P11049 281 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 EIF2B2P49770 351 aaKnown RBP9.71□□□□□ -0.86
VPS52-213ENST00000461743 GP2P55259 537 aaKnown RBP9.71□□□□□ -0.86
VPS52-213ENST00000461743 INSL4Q14641 139 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 ZNF846Q147U1 533 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 SSX1Q16384 188 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 TRIM16LQ309B1 348 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 PIGYQ3MUY2 71 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 SLC22A6Q4U2R8 563 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 PAN3Q58A45 887 aaKnown RBP9.71□□□□□ -0.86
VPS52-213ENST00000461743 C1orf100Q5SVJ3 147 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 FAM27D1Q5T7N8 215 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 GLIPR1L1Q6UWM5 242 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 TMEM91Q6ZNR0 172 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 TCF23Q7RTU1 214 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 LDLRAD3Q86YD5 345 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 OR4M1Q8NGD0 313 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 OR6M1Q8NGM8 313 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 OR10K1Q8NGX5 313 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 FAM216AQ8WUB2 273 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 RAB2BQ8WUD1 216 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 C22orf15Q8WYQ4 148 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 CORO2AQ92828 525 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 C1orf147Q96MC9 270 aaPredicted RBP9.71□□□□□ -0.86
VPS52-213ENST00000461743 ZNF48Q96MX3 618 aaPredicted RBP9.71□□□□□ -0.86
VPS52-213ENST00000461743 WDR12Q9GZL7 423 aaKnown RBP9.71□□□□□ -0.86
VPS52-213ENST00000461743 TAS2R3Q9NYW6 316 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 OR6C3Q9NZP0 311 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 POMT1Q9Y6A1 747 aa9.71□□□□□ -0.86
VPS52-213ENST00000461743 TRAV24A0A0B4J272 114 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 ODAMA1E959 279 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 DNAJC9-AS1A6NH13 148 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 NPFFO15130 113 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 OR7C1O76099 320 aaPredicted RBP9.7□□□□□ -0.86
VPS52-213ENST00000461743 RNASE1P07998 156 aaKnown RBP9.7□□□□□ -0.86
VPS52-213ENST00000461743 FBP1P09467 338 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 CALCBP10092 127 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 CCL3L1P16619 93 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 UBA52P62987 128 aaKnown RBP9.7□□□□□ -0.86
VPS52-213ENST00000461743 FABP5Q01469 135 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 ATXN7L3Q14CW9 347 aaPredicted RBP9.7□□□□□ -0.86
VPS52-213ENST00000461743 OXA1LQ15070 435 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 KRTAP24-1Q3LI83 254 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 KRBOX4Q5JUW0 171 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 GPR107Q5VW38 600 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 RUSC1-AS1Q66K80 236 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 BCL6BQ8N143 479 aaPredicted RBP9.7□□□□□ -0.86
VPS52-213ENST00000461743 C11orf42Q8N5U0 333 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 ZDHHC22Q8N966 263 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 OR4D6Q8NGJ1 314 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 OR13F1Q8NGS4 319 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 OR13D1Q8NGV5 346 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 TMEM203Q969S6 136 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 Q96M66 194 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 BARHL1Q9BZE3 327 aa9.7□□□□□ -0.86
VPS52-213ENST00000461743 RCC2Q9P258 522 aaKnown RBP9.7□□□□□ -0.86
VPS52-213ENST00000461743 TRAV1-2A0A0B4J238 106 aa9.69□□□□□ -0.86
VPS52-213ENST00000461743 TRDV1A0A1B0GX56 115 aa9.69□□□□□ -0.86
VPS52-213ENST00000461743 ZNF729A6NN14 1252 aaPredicted RBP9.69□□□□□ -0.86
VPS52-213ENST00000461743 GEMIN2O14893 280 aaKnown RBP9.69□□□□□ -0.86
VPS52-213ENST00000461743 SLC22A1O15245 554 aa9.69□□□□□ -0.86
VPS52-213ENST00000461743 BPNT1O95861 308 aa9.69□□□□□ -0.86
VPS52-213ENST00000461743 GLAP06280 429 aa9.69□□□□□ -0.86
VPS52-213ENST00000461743 IGHV1-8P0DP01 117 aa9.69□□□□□ -0.86
VPS52-213ENST00000461743 MGMTP16455 207 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms