RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 GPER1Q99527 375 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 S100A13Q99584 98 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 SLC25A33Q9BSK2 321 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 C9orf16Q9BUW7 83 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 ALG8Q9BVK2 526 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 GON7Q9BXV9 100 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 MMP28Q9H239 520 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 RAB9BQ9NP90 201 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 FAM118AQ9NWS6 357 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 DHDHQ9UQ10 334 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 MYRFQ9Y2G1 1151 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 GMPPBQ9Y5P6 360 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 MEX3AA1L020 520 aaKnown RBP5.66□□□□□ -1.5
VPS41-208ENST00000448833 SLC33A1O00400 549 aaPredicted RBP5.66□□□□□ -1.5
VPS41-208ENST00000448833 EI24O14681 340 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 ZNF780AO75290 641 aaPredicted RBP5.66□□□□□ -1.5
VPS41-208ENST00000448833 CSTBP04080 98 aaKnown RBP5.66□□□□□ -1.5
VPS41-208ENST00000448833 NFYBP25208 207 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 GLIPR1P48060 266 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 SNU13P55769 128 aaKnown RBP5.66□□□□□ -1.5
VPS41-208ENST00000448833 NANOS3P60323 173 aaKnown RBP5.66□□□□□ -1.5
VPS41-208ENST00000448833 SLC35B1P78383 322 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 MADCAM1Q13477 382 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 GPR176Q14439 515 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 IL13RA2Q14627 380 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 RSU1Q15404 277 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 HLA-DRB5Q30154 266 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 ABCA11PQ4W5N1 156 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 PAN3Q58A45 887 aaKnown RBP5.66□□□□□ -1.5
VPS41-208ENST00000448833 LDLRAD2Q5SZI1 272 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 TPTE2P1Q5T6R2 138 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 PRAMEF5Q5TYX0 476 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 ZNF691Q5VV52 312 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 TMPRSS11AQ6ZMR5 421 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 TCF23Q7RTU1 214 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 LINC00596Q86U02 117 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 LHFPL3Q86UP9 236 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 SATL1Q86VE3 508 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 OR8H3Q8N146 312 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 COMMD1Q8N668 190 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 RHOXF1Q8NHV9 184 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 MRAPQ8TCY5 172 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 GPR148Q8TDV2 347 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 CHPT1Q8WUD6 406 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 TSEN15Q8WW01 171 aaKnown RBP5.66□□□□□ -1.5
VPS41-208ENST00000448833 PYDC1Q8WXC3 89 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 TOMM40LQ969M1 308 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 RFT1Q96AA3 541 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 MCRIP2Q9BUT9 160 aaKnown RBP5.66□□□□□ -1.5
VPS41-208ENST00000448833 LINC00574Q9H8X3 128 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 ZFP57Q9NU63 452 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 MRPS18AQ9NVS2 196 aaKnown RBP5.66□□□□□ -1.5
VPS41-208ENST00000448833 ERVK13-1Q9NX77 482 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 MOB4Q9Y3A3 225 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 HSPE1-MOB4S4R3N1 261 aa5.66□□□□□ -1.5
VPS41-208ENST00000448833 MEIKINA0A087WXM9 373 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 IGKV1-12A0A0C4DH73 117 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 LOC100130705A0A1B0GUX0 176 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 PSMB11A5LHX3 300 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 H0YJX3 145 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 LY6LH3BQJ8 138 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 J3QR06 171 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 CCRL2O00421 344 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 FGF16O43320 207 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 ZFPL1O95159 310 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 IGKV1D-12P01611 117 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 CALCBP10092 127 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 SNRPBP14678 240 aaKnown RBP5.65□□□□□ -1.5
VPS41-208ENST00000448833 OR3A4PP47883 348 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 GP2P55259 537 aaKnown RBP5.65□□□□□ -1.5
VPS41-208ENST00000448833 PPP3R1P63098 170 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 RBM39Q14498 530 aaKnown RBP5.65□□□□□ -1.5
VPS41-208ENST00000448833 CDK5R1Q15078 307 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 TMEM30BQ3MIR4 351 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 ZIK1Q3SY52 487 aaPredicted RBP5.65□□□□□ -1.5
VPS41-208ENST00000448833 LPCAT4Q643R3 524 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 Q6P435 159 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 RPL22L1Q6P5R6 122 aaKnown RBP5.65□□□□□ -1.5
VPS41-208ENST00000448833 Q6ZPA2 131 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 CCDC121Q6ZUS5 278 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 FOXRED2Q8IWF2 684 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 LYG1Q8N1E2 194 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 OSR2Q8N2R0 312 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 CBR4Q8N4T8 237 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 ZNF555Q8NEP9 628 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 Q8NFD4 153 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 OR51A4Q8NGJ6 313 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 OR5D18Q8NGL1 313 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 OR10X1Q8NGY0 326 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 CNIH3Q8TBE1 160 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 PHF21AQ96BD5 680 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 LGALS12Q96DT0 336 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 KIRREL1Q96J84 757 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 RDH12Q96NR8 316 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 SPACA5Q96QH8 159 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 NR1H4Q96RI1 486 aaPredicted RBP5.65□□□□□ -1.5
VPS41-208ENST00000448833 METTL9Q9H1A3 318 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 IFT22Q9H7X7 185 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 ZNF286AQ9HBT8 521 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 SPACA1Q9HBV2 294 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms