RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 PIGMQ9H3S5 423 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 ZNF629Q9UEG4 869 aaPredicted RBP18.41■□□□□ 0.54
TRIM54-202ENST00000380075 GLS2Q9UI32 602 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 KCNAB3O43448 404 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 DEDDO75618 318 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 DIRAS3O95661 229 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 PPYP01298 95 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 SRPXP78539 464 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 KLRB1Q12918 225 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 FAM209AQ5JX71 171 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 ZNF585AQ6P3V2 769 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 Q8NA96 180 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 RNF141Q8WVD5 230 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 MRPL24Q96A35 216 aaKnown RBP18.41■□□□□ 0.54
TRIM54-202ENST00000380075 TMEM100Q9NV29 134 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 FBXO9Q9UK97 447 aaPredicted RBP18.41■□□□□ 0.54
TRIM54-202ENST00000380075 FREM1Q5H8C1 2179 aa18.4■□□□□ 0.54
TRIM54-202ENST00000380075 AADACP22760 399 aa18.4■□□□□ 0.54
TRIM54-202ENST00000380075 UQCC3Q6UW78 93 aa18.4■□□□□ 0.54
TRIM54-202ENST00000380075 FBXW12Q6X9E4 464 aa18.4■□□□□ 0.54
TRIM54-202ENST00000380075 BHLHE23Q8NDY6 225 aa18.4■□□□□ 0.54
TRIM54-202ENST00000380075 TAS2R3Q9NYW6 316 aa18.4■□□□□ 0.54
TRIM54-202ENST00000380075 TMA7Q9Y2S6 64 aaKnown RBP18.4■□□□□ 0.54
TRIM54-202ENST00000380075 ARHGAP21Q5T5U3 1957 aa18.4■□□□□ 0.54
TRIM54-202ENST00000380075 NUDT19A8MXV4 375 aa18.39■□□□□ 0.53
TRIM54-202ENST00000380075 H7C1Q1 480 aa18.39■□□□□ 0.53
TRIM54-202ENST00000380075 CNOT4O95628 575 aaKnown RBP18.39■□□□□ 0.53
TRIM54-202ENST00000380075 TK1P04183 234 aa18.39■□□□□ 0.53
TRIM54-202ENST00000380075 TUSC1Q2TAM9 212 aa18.39■□□□□ 0.53
TRIM54-202ENST00000380075 EIF5AL1Q6IS14 154 aaKnown RBP18.39■□□□□ 0.53
TRIM54-202ENST00000380075 HAGHLQ6PII5 290 aaPredicted RBP18.39■□□□□ 0.53
TRIM54-202ENST00000380075 STPG2Q8N412 459 aa18.39■□□□□ 0.53
TRIM54-202ENST00000380075 GALNT11Q8NCW6 608 aa18.39■□□□□ 0.53
TRIM54-202ENST00000380075 C17orf50Q8WW18 174 aa18.39■□□□□ 0.53
TRIM54-202ENST00000380075 C18orf12Q96KH6 178 aa18.39■□□□□ 0.53
TRIM54-202ENST00000380075 MICU1Q9BPX6 476 aa18.39■□□□□ 0.53
TRIM54-202ENST00000380075 PLEKHA2Q9HB19 425 aa18.39■□□□□ 0.53
TRIM54-202ENST00000380075 RALYQ9UKM9 306 aaKnown RBP18.39■□□□□ 0.53
TRIM54-202ENST00000380075 TRBV6-6A0A0A6YYG2 114 aa18.39■□□□□ 0.53
TRIM54-202ENST00000380075 SYNGR1O43759 233 aa18.39■□□□□ 0.53
TRIM54-202ENST00000380075 HKR1P10072 659 aa18.39■□□□□ 0.53
TRIM54-202ENST00000380075 HOXB1P14653 301 aaPredicted RBP18.39■□□□□ 0.53
TRIM54-202ENST00000380075 ZNF14P17017 642 aaPredicted RBP18.39■□□□□ 0.53
TRIM54-202ENST00000380075 UBE2NP61088 152 aaKnown RBP18.39■□□□□ 0.53
TRIM54-202ENST00000380075 PHLDA2Q53GA4 152 aa18.39■□□□□ 0.53
TRIM54-202ENST00000380075 OR5T2Q8NGG2 359 aa18.39■□□□□ 0.53
TRIM54-202ENST00000380075 IFT22Q9H7X7 185 aa18.39■□□□□ 0.53
TRIM54-202ENST00000380075 ZNF407Q9C0G0 2248 aa18.38■□□□□ 0.53
TRIM54-202ENST00000380075 RAB19A4D1S5 217 aa18.38■□□□□ 0.53
TRIM54-202ENST00000380075 PRKACAP17612 351 aa18.38■□□□□ 0.53
TRIM54-202ENST00000380075 RND3P61587 244 aa18.38■□□□□ 0.53
TRIM54-202ENST00000380075 PMP22Q01453 160 aa18.38■□□□□ 0.53
TRIM54-202ENST00000380075 MSI2Q96DH6 328 aaKnown RBP18.38■□□□□ 0.53
TRIM54-202ENST00000380075 ATP23Q9Y6H3 246 aa18.38■□□□□ 0.53
TRIM54-202ENST00000380075 PRRC2CQ9Y520 2896 aaKnown RBP18.38■□□□□ 0.53
TRIM54-202ENST00000380075 SPTA1P02549 2419 aa18.38■□□□□ 0.53
TRIM54-202ENST00000380075 J3QT63 122 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 K7EPK0 472 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 AQP7O14520 342 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 ZNHIT1O43257 154 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 FAM214BQ7L5A3 538 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 BATF2Q8N1L9 274 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 FAM71E2Q8N5Q1 922 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 GLYATL2Q8WU03 294 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 MARC2Q969Z3 335 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 RTL8AQ9BWD3 113 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 OR51I2Q9H344 312 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 TMED3Q9Y3Q3 217 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 TRDCB7Z8K6 153 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 TEX46H3BTG2 121 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 LGALS8O00214 317 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 SCO1O75880 301 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 ZNF205O95201 554 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 DUSP1P28562 367 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 RPL12P30050 165 aaKnown RBP18.37■□□□□ 0.53
TRIM54-202ENST00000380075 IGSF11Q5DX21 431 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 NEK7Q8TDX7 302 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 TAAR6Q96RI8 345 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 CDH20Q9HBT6 801 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 ZC4H2Q9NQZ6 224 aa18.37■□□□□ 0.53
TRIM54-202ENST00000380075 E5RGE8 158 aa18.36■□□□□ 0.53
TRIM54-202ENST00000380075 GAPDHP04406 335 aaKnown RBP18.36■□□□□ 0.53
TRIM54-202ENST00000380075 IGHV1-2P23083 117 aa18.36■□□□□ 0.53
TRIM54-202ENST00000380075 GUSBP1Q15486 140 aa18.36■□□□□ 0.53
TRIM54-202ENST00000380075 SP6Q3SY56 376 aa18.36■□□□□ 0.53
TRIM54-202ENST00000380075 OR2T2Q6IF00 324 aa18.36■□□□□ 0.53
TRIM54-202ENST00000380075 Q6ZT83 130 aa18.36■□□□□ 0.53
TRIM54-202ENST00000380075 Q8IYB0 196 aa18.36■□□□□ 0.53
TRIM54-202ENST00000380075 FAM58AQ8N1B3 248 aa18.36■□□□□ 0.53
TRIM54-202ENST00000380075 HS3ST6Q96QI5 342 aa18.36■□□□□ 0.53
TRIM54-202ENST00000380075 PCDHB10Q9UN67 800 aa18.36■□□□□ 0.53
TRIM54-202ENST00000380075 NSG2Q9Y328 171 aa18.36■□□□□ 0.53
TRIM54-202ENST00000380075 CHD6Q8TD26 2715 aa18.36■□□□□ 0.53
TRIM54-202ENST00000380075 DNAJC13O75165 2243 aa18.36■□□□□ 0.53
TRIM54-202ENST00000380075 MPPED1O15442 326 aa18.35■□□□□ 0.53
TRIM54-202ENST00000380075 SMPD2O60906 423 aa18.35■□□□□ 0.53
TRIM54-202ENST00000380075 PRB1P04280 392 aa18.35■□□□□ 0.53
TRIM54-202ENST00000380075 LDLRAD3Q86YD5 345 aa18.35■□□□□ 0.53
TRIM54-202ENST00000380075 BOD1Q96IK1 185 aa18.35■□□□□ 0.53
TRIM54-202ENST00000380075 C3orf85A0A1B0GTC6 90 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms