RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 OPRM1P35372 400 aa4.32□□□□□ -1.72
PCDH9-201ENST00000377861 ERVFC1-1P60608 527 aa4.32□□□□□ -1.72
PCDH9-201ENST00000377861 ZNF146Q15072 292 aa4.32□□□□□ -1.72
PCDH9-201ENST00000377861 GPA33Q99795 319 aa4.32□□□□□ -1.72
PCDH9-201ENST00000377861 CFHR1Q03591 330 aa4.32□□□□□ -1.72
PCDH9-201ENST00000377861 DMWDQ09019 674 aa4.32□□□□□ -1.72
PCDH9-201ENST00000377861 ERRFI1Q9UJM3 462 aaPredicted RBP4.32□□□□□ -1.72
PCDH9-201ENST00000377861 LAMTOR2Q9Y2Q5 125 aa4.32□□□□□ -1.72
PCDH9-201ENST00000377861 SLC25A17O43808 307 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 GNG13Q9P2W3 67 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 NAXEQ8NCW5 288 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 TWSG1Q9GZX9 223 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 IGKV1-8A0A0C4DH67 115 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 TMEM262E9PQX1 116 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 TTRP02766 147 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 RPL35P42766 123 aaKnown RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 REG1BP48304 166 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 TAS2R4Q9NYW5 299 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 RCC1P18754 421 aaPredicted RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 TMEM108Q6UXF1 575 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 HEXA-AS1Q9H8Q6 139 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 CCDC88AQ3V6T2 1871 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 RIGQ13278 110 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 LHFPL1Q86WI0 220 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 PFN4Q8NHR9 129 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 PIGCQ92535 297 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 TMEM191AQ9H0A3 160 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 TEX50A0A1B0GTY4 177 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 RBM11P57052 281 aaKnown RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 VAMP8Q9BV40 100 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 TLNRD1Q9H1K6 362 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 C7orf71A4D174 169 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 H3BMH7 237 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 RBMXL3Q8N7X1 1067 aaKnown RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 WASHC3Q9Y3C0 194 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 CD1BP29016 333 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 FMODQ06828 376 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 SLC25A10Q9UBX3 287 aaPredicted RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 WIPI2Q9Y4P8 454 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 TGIF2-C20orf24A0A0A6YYL0 155 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 MGST3O14880 152 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 LIPFP07098 398 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 TMEM183AQ8IXX5 376 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 C1QTNF6Q9BXI9 259 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 UQCR10Q9UDW1 63 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 LOC102723996A0A087X1L8 192 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 GYPBP06028 91 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 OR1C1Q15619 314 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 TMEM252Q8N6L7 170 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 OSR1Q8TAX0 266 aaPredicted RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 MRPS18BQ9Y676 258 aaKnown RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 IGSF23A1L1A6 192 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 HSPE1P61604 102 aaKnown RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 SCGB2A2Q13296 93 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 RAB32Q13637 225 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 AAMDCQ9H7C9 122 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 SCCPDHQ8NBX0 429 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 ADAP1O75689 374 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 CTLA4P16410 223 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 H2BFSP57053 126 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 SRSF2Q01130 221 aaKnown RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 LRP11Q86VZ4 500 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 PNPLA1Q8N8W4 532 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 OR5C1Q8NGR4 320 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 FLRT3Q9NZU0 649 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 PLAGL1Q9UM63 463 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 MED20Q9H944 212 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 DDX60Q8IY21 1712 aaKnown RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 OR1L8Q8NGR8 309 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 PLPPR1Q8TBJ4 325 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 GSX1Q9H4S2 264 aaPredicted RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 TMEM267Q0VDI3 215 aaPredicted RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 LAMA4Q16363 1823 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 OR10J3Q5JRS4 329 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 MEX3BQ6ZN04 569 aaKnown RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 OR5D18Q8NGL1 313 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 F2Z2F3 143 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 BMPR1BO00238 502 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 FZD5Q13467 585 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 COA6Q5JTJ3 125 aaKnown RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 OR10X1Q8NGY0 326 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 MRPL32Q9BYC8 188 aaKnown RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 TMEM238LA0A1B0GVL6 79 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 A6NJY4 79 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 CXCL2P19875 107 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 MESTQ5EB52 335 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 SLC25A40Q8TBP6 338 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 GDF15Q99988 308 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 LOC102723971A0A1B0GUV8 181 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 NDUFA6P56556 154 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 FAM71F2Q6NXP2 309 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 MS4A6AQ9H2W1 248 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 CRISP2P16562 243 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 KISS1RQ969F8 398 aaPredicted RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 MAP1LC3CQ9BXW4 147 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 TRBV23OR9-2A0A075B6M9 112 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 JOSD1Q15040 202 aaPredicted RBP4.31□□□□□ -1.72
PCDH9-201ENST00000377861 C8orf31Q8N9H6 132 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 FOXS1O43638 330 aa4.31□□□□□ -1.72
PCDH9-201ENST00000377861 FSTL3O95633 263 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms