RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 USF3Q68DE3 2245 aa16.62■□□□□ 0.25
CLN3-205ENST00000359984 ECDO95905 644 aaPredicted RBP16.61■□□□□ 0.25
CLN3-205ENST00000359984 CSF1P09603 554 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 DTYMKP23919 212 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 EFNA4P52798 201 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 ZMYND11Q15326 602 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 CARTPTQ16568 116 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 Q6ZPA2 131 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 MAFIPQ8WZ33 124 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 CCL13Q99616 98 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 TAS2R8Q9NYW2 309 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 NAPSAO96009 420 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 FCGR3AP08637 254 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 NAT1P18440 290 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 AP3S2P59780 193 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 ATXN7L3Q14CW9 347 aaPredicted RBP16.61■□□□□ 0.25
CLN3-205ENST00000359984 OR52W1Q6IF63 320 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 ZNF788Q6ZQV5 615 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 HOGA1Q86XE5 327 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 ZNRF1Q8ND25 227 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 SNAPC3Q92966 411 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 GAFA1Q96PS6 74 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 ZNF701Q9NV72 531 aaPredicted RBP16.61■□□□□ 0.25
CLN3-205ENST00000359984 ING3Q9NXR8 418 aa16.61■□□□□ 0.25
CLN3-205ENST00000359984 GCN1Q92616 2671 aaKnown RBP16.6■□□□□ 0.25
CLN3-205ENST00000359984 A0A1B0GW55 424 aa16.6■□□□□ 0.25
CLN3-205ENST00000359984 TNFRSF13BO14836 293 aaPredicted RBP16.6■□□□□ 0.25
CLN3-205ENST00000359984 DUX4L2P0CJ85 424 aa16.6■□□□□ 0.25
CLN3-205ENST00000359984 DUX4L3P0CJ86 424 aa16.6■□□□□ 0.25
CLN3-205ENST00000359984 DUX4L4P0CJ87 422 aa16.6■□□□□ 0.25
CLN3-205ENST00000359984 DUX4L5P0CJ88 424 aa16.6■□□□□ 0.25
CLN3-205ENST00000359984 DUX4L6P0CJ89 424 aa16.6■□□□□ 0.25
CLN3-205ENST00000359984 DUX4L7P0CJ90 424 aa16.6■□□□□ 0.25
CLN3-205ENST00000359984 MDH2P40926 338 aaKnown RBP16.6■□□□□ 0.25
CLN3-205ENST00000359984 BTG1P62324 171 aa16.6■□□□□ 0.25
CLN3-205ENST00000359984 DYRK1AQ13627 763 aa16.6■□□□□ 0.25
CLN3-205ENST00000359984 ATPAF1Q5TC12 328 aaPredicted RBP16.6■□□□□ 0.25
CLN3-205ENST00000359984 MZT2BQ6NZ67 158 aa16.6■□□□□ 0.25
CLN3-205ENST00000359984 DUX4L9Q6RFH8 374 aaPredicted RBP16.6■□□□□ 0.25
CLN3-205ENST00000359984 TMEM229BQ8NBD8 167 aa16.6■□□□□ 0.25
CLN3-205ENST00000359984 NRGNQ92686 78 aa16.6■□□□□ 0.25
CLN3-205ENST00000359984 SNX22Q96L94 193 aa16.6■□□□□ 0.25
CLN3-205ENST00000359984 ZNF665Q9H7R5 613 aa16.6■□□□□ 0.25
CLN3-205ENST00000359984 CHMP1AQ9HD42 196 aaPredicted RBP16.6■□□□□ 0.25
CLN3-205ENST00000359984 DUX4Q9UBX2 424 aa16.6■□□□□ 0.25
CLN3-205ENST00000359984 CD3DP04234 171 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 SELLP14151 372 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 HLA-DMAP28067 261 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 ZNF497Q6ZNH5 498 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 ZNF561Q8N587 486 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 RIMS4Q9H426 269 aaPredicted RBP16.59■□□□□ 0.25
CLN3-205ENST00000359984 ZNF107Q9UII5 783 aaPredicted RBP16.59■□□□□ 0.25
CLN3-205ENST00000359984 TACC2O95359 2948 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 IGKV1D-8A0A087WSZ0 117 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 K7N7A8 449 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 FSTL3O95633 263 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 SSTR2P30874 369 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 KCNJ3P48549 501 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 TAS2R19P59542 299 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 GRK1Q15835 563 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 RSBN1Q5VWQ0 802 aaPredicted RBP16.59■□□□□ 0.25
CLN3-205ENST00000359984 HIST2H2BCQ6DN03 193 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 GAPTQ8N292 157 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 FAM216BQ8N7L0 139 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 BEST4Q8NFU0 473 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 ENKURQ8TC29 256 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 MRPL30Q8TCC3 161 aaKnown RBP16.59■□□□□ 0.25
CLN3-205ENST00000359984 TMEM246Q9BRR3 403 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 CHODLQ9H9P2 273 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 HRASLSQ9HDD0 168 aa16.59■□□□□ 0.25
CLN3-205ENST00000359984 MYOZ1Q9NP98 299 aaPredicted RBP16.59■□□□□ 0.25
CLN3-205ENST00000359984 ZNF736B4DX44 427 aaPredicted RBP16.58■□□□□ 0.24
CLN3-205ENST00000359984 SIGLEC5O15389 551 aa16.58■□□□□ 0.24
CLN3-205ENST00000359984 IGHV2-70P01814 119 aa16.58■□□□□ 0.24
CLN3-205ENST00000359984 MT-ND4P03905 459 aa16.58■□□□□ 0.24
CLN3-205ENST00000359984 AESQ08117 197 aa16.58■□□□□ 0.24
CLN3-205ENST00000359984 ZNF787Q6DD87 383 aa16.58■□□□□ 0.24
CLN3-205ENST00000359984 STEAP1BQ6NZ63 245 aa16.58■□□□□ 0.24
CLN3-205ENST00000359984 PEG10Q86TG7 708 aaKnown RBP16.58■□□□□ 0.24
CLN3-205ENST00000359984 AKAP14Q86UN6 197 aa16.58■□□□□ 0.24
CLN3-205ENST00000359984 OR4K15Q8NH41 348 aa16.58■□□□□ 0.24
CLN3-205ENST00000359984 MARVELD3Q96A59 401 aa16.58■□□□□ 0.24
CLN3-205ENST00000359984 COQ2Q96H96 371 aa16.58■□□□□ 0.24
CLN3-205ENST00000359984 DNTTIP1Q9H147 329 aa16.58■□□□□ 0.24
CLN3-205ENST00000359984 FBN2P35556 2912 aa16.58■□□□□ 0.24
CLN3-205ENST00000359984 TRBV6-6A0A0A6YYG2 114 aa16.57■□□□□ 0.24
CLN3-205ENST00000359984 A0A0B4J293 547 aa16.57■□□□□ 0.24
CLN3-205ENST00000359984 NKX6-3A6NJ46 265 aa16.57■□□□□ 0.24
CLN3-205ENST00000359984 IGHV4-39P01824 125 aa16.57■□□□□ 0.24
CLN3-205ENST00000359984 TK1P04183 234 aa16.57■□□□□ 0.24
CLN3-205ENST00000359984 CSN2P05814 226 aa16.57■□□□□ 0.24
CLN3-205ENST00000359984 AVPI1Q5T686 147 aa16.57■□□□□ 0.24
CLN3-205ENST00000359984 FAAP20Q6NZ36 180 aa16.57■□□□□ 0.24
CLN3-205ENST00000359984 LYPD2Q6UXB3 125 aa16.57■□□□□ 0.24
CLN3-205ENST00000359984 GLCCI1Q86VQ1 547 aa16.57■□□□□ 0.24
CLN3-205ENST00000359984 OR4D10Q8NGI6 311 aa16.57■□□□□ 0.24
CLN3-205ENST00000359984 PPP1R35Q8TAP8 253 aa16.57■□□□□ 0.24
CLN3-205ENST00000359984 EDARQ9UNE0 448 aa16.57■□□□□ 0.24
CLN3-205ENST00000359984 CELSR2Q9HCU4 2923 aa16.57■□□□□ 0.24
CLN3-205ENST00000359984 M0QYG6 137 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 115.5 ms