RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 FXYD6Q9H0Q3 95 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 SLC23A1Q9UHI7 598 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 MGAT4AQ9UM21 535 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 ATP23Q9Y6H3 246 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 KIR2DS1A0A191URI9 304 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 NKX2-6A6NCS4 301 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 OR2A4O95047 310 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 KNG1P01042 644 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 SCTP09683 121 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 MDH2P40926 338 aaKnown RBP11.3□□□□□ -0.6
HMGB1-202ENST00000339872 KIR2DS4P43632 304 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 ZNF81P51508 661 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 RAP2BP61225 183 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 SNTB1Q13884 538 aaKnown RBP11.3□□□□□ -0.6
HMGB1-202ENST00000339872 KIR2DS1Q14954 304 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 ATXN7L3Q14CW9 347 aaPredicted RBP11.3□□□□□ -0.6
HMGB1-202ENST00000339872 SMIM21Q3B7S5 101 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 SPRNQ5BIV9 151 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 OR11H4Q8NGC9 324 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 PLPPR1Q8TBJ4 325 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 ZFAND1Q8TCF1 268 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 MEGF10Q96KG7 1140 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 OR2A7Q96R45 310 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 TMEM165Q9HC07 324 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 NGBQ9NPG2 151 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 GLS2Q9UI32 602 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 TRDCB7Z8K6 153 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 ERVH48-1M5A8F1 160 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 BET1O15155 118 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 DUS4LO95620 317 aaKnown RBP11.29□□□□□ -0.6
HMGB1-202ENST00000339872 PTBP3O95758 552 aaKnown RBP11.29□□□□□ -0.6
HMGB1-202ENST00000339872 NFYAP23511 347 aaPredicted RBP11.29□□□□□ -0.6
HMGB1-202ENST00000339872 PLA2G5P39877 138 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 ADORA2A-AS1P86434 159 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 DHODHQ02127 395 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 SLC9A3R2Q15599 337 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 Q5BKY6 102 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 KDF1Q8NAX2 398 aaPredicted RBP11.29□□□□□ -0.6
HMGB1-202ENST00000339872 OR5T2Q8NGG2 359 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 GRPEL2Q8TAA5 225 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 ITLN1Q8WWA0 313 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 DECR2Q9NUI1 292 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 TRBV6-6A0A0A6YYG2 114 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 G3V3Q6 166 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 TFF1P04155 84 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 ZNF728P0DKX0 622 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 RCC1P18754 421 aaPredicted RBP11.29□□□□□ -0.6
HMGB1-202ENST00000339872 SEC61A1P61619 476 aaKnown RBP11.29□□□□□ -0.6
HMGB1-202ENST00000339872 PCSK4Q6UW60 755 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 KCTD9Q7L273 389 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 MOGAT3Q86VF5 341 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 CLEC4MQ9H2X3 399 aaPredicted RBP11.29□□□□□ -0.6
HMGB1-202ENST00000339872 OPN4Q9UHM6 478 aa11.29□□□□□ -0.6
HMGB1-202ENST00000339872 PLCE1Q9P212 2302 aa11.28□□□□□ -0.6
HMGB1-202ENST00000339872 CCSO14618 274 aa11.28□□□□□ -0.6
HMGB1-202ENST00000339872 SFT2D2O95562 160 aa11.28□□□□□ -0.6
HMGB1-202ENST00000339872 CTSDP07339 412 aaPredicted RBP11.28□□□□□ -0.6
HMGB1-202ENST00000339872 EGR1P18146 543 aa11.28□□□□□ -0.6
HMGB1-202ENST00000339872 AADACP22760 399 aa11.28□□□□□ -0.6
HMGB1-202ENST00000339872 HERV-K104P61576 105 aa11.28□□□□□ -0.6
HMGB1-202ENST00000339872 SUPT4H1P63272 117 aaKnown RBP11.28□□□□□ -0.6
HMGB1-202ENST00000339872 HERPUD1Q15011 391 aa11.28□□□□□ -0.6
HMGB1-202ENST00000339872 LY6G6FQ5SQ64 297 aa11.28□□□□□ -0.6
HMGB1-202ENST00000339872 SHEQ5VZ18 495 aa11.28□□□□□ -0.6
HMGB1-202ENST00000339872 CLEC18BQ6UXF7 455 aa11.28□□□□□ -0.6
HMGB1-202ENST00000339872 ZNF497Q6ZNH5 498 aa11.28□□□□□ -0.6
HMGB1-202ENST00000339872 BOLLQ8N9W6 283 aaKnown RBP11.28□□□□□ -0.6
HMGB1-202ENST00000339872 OR5M8Q8NGP6 311 aa11.28□□□□□ -0.6
HMGB1-202ENST00000339872 TREM2Q9NZC2 230 aa11.28□□□□□ -0.6
HMGB1-202ENST00000339872 HSPB11Q9Y547 144 aa11.28□□□□□ -0.6
HMGB1-202ENST00000339872 H7C1Q1 480 aa11.27□□□□□ -0.6
HMGB1-202ENST00000339872 PSPNO60542 156 aa11.27□□□□□ -0.6
HMGB1-202ENST00000339872 PPYP01298 95 aa11.27□□□□□ -0.6
HMGB1-202ENST00000339872 IGHV1-46P01743 117 aa11.27□□□□□ -0.6
HMGB1-202ENST00000339872 TK1P04183 234 aa11.27□□□□□ -0.6
HMGB1-202ENST00000339872 OR4A8P0C604 315 aa11.27□□□□□ -0.6
HMGB1-202ENST00000339872 HLA-DRB3P79483 266 aa11.27□□□□□ -0.6
HMGB1-202ENST00000339872 TNFAIP6P98066 277 aaPredicted RBP11.27□□□□□ -0.6
HMGB1-202ENST00000339872 ADIPOQQ15848 244 aa11.27□□□□□ -0.6
HMGB1-202ENST00000339872 FBXL19-AS1Q494R0 122 aa11.27□□□□□ -0.6
HMGB1-202ENST00000339872 LAMTOR1Q6IAA8 161 aa11.27□□□□□ -0.6
HMGB1-202ENST00000339872 ZNF880Q6PDB4 577 aa11.27□□□□□ -0.6
HMGB1-202ENST00000339872 C9orf62Q8N4C0 152 aa11.27□□□□□ -0.6
HMGB1-202ENST00000339872 RNASE6Q93091 150 aaKnown RBP11.27□□□□□ -0.6
HMGB1-202ENST00000339872 MOB3AQ96BX8 217 aa11.27□□□□□ -0.6
HMGB1-202ENST00000339872 DHRS9Q9BPW9 319 aa11.27□□□□□ -0.6
HMGB1-202ENST00000339872 ESRP2Q9H6T0 727 aaKnown RBP11.27□□□□□ -0.6
HMGB1-202ENST00000339872 PRR13Q9NZ81 148 aa11.27□□□□□ -0.6
HMGB1-202ENST00000339872 TRAV39A0A0B4J263 110 aa11.27□□□□□ -0.61
HMGB1-202ENST00000339872 RFPL4AA6NLU0 287 aa11.27□□□□□ -0.61
HMGB1-202ENST00000339872 SRRM5B3KS81 715 aa11.27□□□□□ -0.61
HMGB1-202ENST00000339872 RFPL4AL1F8VTS6 287 aa11.27□□□□□ -0.61
HMGB1-202ENST00000339872 GRNP28799 593 aaKnown RBP11.27□□□□□ -0.61
HMGB1-202ENST00000339872 SNRPD2P62316 118 aaKnown RBP11.27□□□□□ -0.61
HMGB1-202ENST00000339872 OR10Z1Q8NGY1 313 aa11.27□□□□□ -0.61
HMGB1-202ENST00000339872 TMEM246Q9BRR3 403 aa11.27□□□□□ -0.61
HMGB1-202ENST00000339872 TRAPPC2LQ9UL33 140 aa11.27□□□□□ -0.61
HMGB1-202ENST00000339872 ITPR1Q14643 2758 aa11.27□□□□□ -0.61
HMGB1-202ENST00000339872 IGKV1-6A0A0C4DH72 117 aa11.26□□□□□ -0.61
HMGB1-202ENST00000339872 RPS2P15880 293 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms