RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 RASA1P20936 1047 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 USP11P51784 963 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 SEC13P55735 322 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 CABP4P57796 275 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 NLRP12P59046 1061 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 EXOSC6Q5RKV6 272 aaKnown RBP1.84□□□□□ -2.11
VPS35-212ENST00000640313 USP17L2Q6R6M4 530 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 ZNF574Q6ZN55 896 aaPredicted RBP1.84□□□□□ -2.11
VPS35-212ENST00000640313 USP17L1Q7RTZ2 530 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 RGL4Q8IZJ4 473 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 CEP120Q8N960 986 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 C2CD4AQ8NCU7 369 aaPredicted RBP1.84□□□□□ -2.11
VPS35-212ENST00000640313 LRRN4CLQ8ND94 238 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 FLAD1Q8NFF5 587 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 POP1Q99575 1024 aaKnown RBP1.84□□□□□ -2.11
VPS35-212ENST00000640313 YIPF2Q9BWQ6 316 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 LRRC4CQ9HCJ2 640 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 MKRN1Q9UHC7 482 aaKnown RBP1.84□□□□□ -2.11
VPS35-212ENST00000640313 ADAMTS6Q9UKP5 1117 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 VAV3Q9UKW4 847 aa1.84□□□□□ -2.11
VPS35-212ENST00000640313 INHBBP09529 407 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 CD8BP10966 210 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 DRD2P14416 443 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 ARL4DP49703 201 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 SOX4Q06945 474 aaPredicted RBP1.83□□□□□ -2.12
VPS35-212ENST00000640313 C19orf57Q0VDD7 668 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 BNIP3Q12983 259 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 MAP7Q14244 749 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 MLANAQ16655 118 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 OGFOD3Q6PK18 319 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 SEZ6L2Q6UXD5 910 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 ZNF765Q7L2R6 523 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 ZSWIM9Q86XI8 627 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 TREML1Q86YW5 311 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 PI4K2BQ8TCG2 481 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 RELTQ969Z4 430 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 C20orf173Q96LM9 149 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 UTP3Q9NQZ2 479 aaKnown RBP eCLIP1.83□□□□□ -2.12
VPS35-212ENST00000640313 LRFN2Q9ULH4 789 aa1.83□□□□□ -2.12
VPS35-212ENST00000640313 LOC100289279A0A1B0GTE1 492 aa1.82□□□□□ -2.12
VPS35-212ENST00000640313 IQCJ-SCHIP1C9J366 451 aaPredicted RBP1.82□□□□□ -2.12
VPS35-212ENST00000640313 NFKBIEO00221 500 aa1.82□□□□□ -2.12
VPS35-212ENST00000640313 FOXO3O43524 673 aa1.82□□□□□ -2.12
VPS35-212ENST00000640313 ATP9BO43861 1147 aa1.82□□□□□ -2.12
VPS35-212ENST00000640313 DLGAP3O95886 979 aa1.82□□□□□ -2.12
VPS35-212ENST00000640313 C1QTNF9P0C862 333 aa1.82□□□□□ -2.12
VPS35-212ENST00000640313 HOXA5P20719 270 aa1.82□□□□□ -2.12
VPS35-212ENST00000640313 SCNN1AP37088 669 aa1.82□□□□□ -2.12
VPS35-212ENST00000640313 PRKCQQ04759 706 aa1.82□□□□□ -2.12
VPS35-212ENST00000640313 KRTAP1-1Q07627 177 aa1.82□□□□□ -2.12
VPS35-212ENST00000640313 TRIP4Q15650 581 aaPredicted RBP1.82□□□□□ -2.12
VPS35-212ENST00000640313 KCNMB1Q16558 191 aa1.82□□□□□ -2.12
VPS35-212ENST00000640313 TTC39BQ5VTQ0 682 aaPredicted RBP1.82□□□□□ -2.12
VPS35-212ENST00000640313 SLC23A3Q6PIS1 610 aa1.82□□□□□ -2.12
VPS35-212ENST00000640313 SYDE1Q6ZW31 735 aaPredicted RBP1.82□□□□□ -2.12
VPS35-212ENST00000640313 NETO1Q8TDF5 533 aa1.82□□□□□ -2.12
VPS35-212ENST00000640313 ZNF594Q96JF6 807 aaPredicted RBP1.82□□□□□ -2.12
VPS35-212ENST00000640313 HINFPQ9BQA5 517 aa1.82□□□□□ -2.12
VPS35-212ENST00000640313 C1GALT1Q9NS00 363 aa1.82□□□□□ -2.12
VPS35-212ENST00000640313 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP1.81□□□□□ -2.12
VPS35-212ENST00000640313 UBAP1LF5GYI3 381 aa1.81□□□□□ -2.12
VPS35-212ENST00000640313 SOX1O00570 391 aaPredicted RBP1.81□□□□□ -2.12
VPS35-212ENST00000640313 NFIBO00712 420 aa1.81□□□□□ -2.12
VPS35-212ENST00000640313 EIF4EBP3O60516 100 aaPredicted RBP1.81□□□□□ -2.12
VPS35-212ENST00000640313 PSPNO60542 156 aa1.81□□□□□ -2.12
VPS35-212ENST00000640313 FOXD2O60548 495 aaPredicted RBP1.81□□□□□ -2.12
VPS35-212ENST00000640313 NFICP08651 508 aa1.81□□□□□ -2.12
VPS35-212ENST00000640313 WEE1P30291 646 aa1.81□□□□□ -2.12
VPS35-212ENST00000640313 CYP27C1Q4G0S4 372 aa1.81□□□□□ -2.12
VPS35-212ENST00000640313 HGSNATQ68CP4 663 aa1.81□□□□□ -2.12
VPS35-212ENST00000640313 NCAPG2Q86XI2 1143 aa1.81□□□□□ -2.12
VPS35-212ENST00000640313 SLC7A3Q8WY07 619 aa1.81□□□□□ -2.12
VPS35-212ENST00000640313 SEMA6CQ9H3T2 930 aa1.81□□□□□ -2.12
VPS35-212ENST00000640313 GSX1Q9H4S2 264 aaPredicted RBP1.81□□□□□ -2.12
VPS35-212ENST00000640313 SOX17Q9H6I2 414 aaPredicted RBP1.81□□□□□ -2.12
VPS35-212ENST00000640313 ACSS3Q9H6R3 686 aa1.81□□□□□ -2.12
VPS35-212ENST00000640313 MKNK2Q9HBH9 465 aa1.81□□□□□ -2.12
VPS35-212ENST00000640313 CRIM1Q9NZV1 1036 aa1.81□□□□□ -2.12
VPS35-212ENST00000640313 SOX13Q9UN79 622 aa1.81□□□□□ -2.12
VPS35-212ENST00000640313 FNDC3AQ9Y2H6 1198 aaKnown RBP1.81□□□□□ -2.12
VPS35-212ENST00000640313 NPIPB6E9PJ23 425 aa1.8□□□□□ -2.12
VPS35-212ENST00000640313 PDE2AO00408 941 aaPredicted RBP1.8□□□□□ -2.12
VPS35-212ENST00000640313 CYP2E1P05181 493 aaPredicted RBP1.8□□□□□ -2.12
VPS35-212ENST00000640313 ADH5P11766 374 aa1.8□□□□□ -2.12
VPS35-212ENST00000640313 BRD2P25440 801 aaKnown RBP1.8□□□□□ -2.12
VPS35-212ENST00000640313 AFMP43652 599 aa1.8□□□□□ -2.12
VPS35-212ENST00000640313 COX20Q5RI15 118 aa1.8□□□□□ -2.12
VPS35-212ENST00000640313 PRR23BQ6ZRT6 265 aa1.8□□□□□ -2.12
VPS35-212ENST00000640313 ETFBKMTQ8IXQ9 262 aa1.8□□□□□ -2.12
VPS35-212ENST00000640313 PLD6Q8N2A8 252 aaKnown RBP1.8□□□□□ -2.12
VPS35-212ENST00000640313 FBXO15Q8NCQ5 510 aaPredicted RBP1.8□□□□□ -2.12
VPS35-212ENST00000640313 PIK3R5Q8WYR1 880 aa1.8□□□□□ -2.12
VPS35-212ENST00000640313 VTI1AQ96AJ9 217 aa1.8□□□□□ -2.12
VPS35-212ENST00000640313 LIN37Q96GY3 246 aaPredicted RBP1.8□□□□□ -2.12
VPS35-212ENST00000640313 UCN2Q96RP3 112 aa1.8□□□□□ -2.12
VPS35-212ENST00000640313 CD320Q9NPF0 282 aa1.8□□□□□ -2.12
VPS35-212ENST00000640313 DZANK1Q9NVP4 752 aa1.8□□□□□ -2.12
VPS35-212ENST00000640313 ABI2Q9NYB9 513 aaPredicted RBP1.8□□□□□ -2.12
VPS35-212ENST00000640313 FAM13BQ9NYF5 915 aa1.8□□□□□ -2.12
VPS35-212ENST00000640313 SALL4Q9UJQ4 1053 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms