RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 PDE6AP16499 860 aa24.2■■□□□ 1.46
CLN3-250ENST00000636839 HSPA4P34932 840 aa24.2■■□□□ 1.46
CLN3-250ENST00000636839 ADD2P35612 726 aa24.2■■□□□ 1.46
CLN3-250ENST00000636839 RASEFQ8IZ41 740 aa24.2■■□□□ 1.46
CLN3-250ENST00000636839 HELLSQ9NRZ9 838 aa24.2■■□□□ 1.46
CLN3-250ENST00000636839 CACNA1SQ13698 1873 aa24.19■■□□□ 1.46
CLN3-250ENST00000636839 SLX4Q8IY92 1834 aa24.19■■□□□ 1.46
CLN3-250ENST00000636839 MAP4K1Q92918 833 aa24.19■■□□□ 1.46
CLN3-250ENST00000636839 DENND2AQ9ULE3 1009 aa24.19■■□□□ 1.46
CLN3-250ENST00000636839 ZNF532Q9HCE3 1301 aa24.19■■□□□ 1.46
CLN3-250ENST00000636839 LRRC37AA6NMS7 1700 aa24.19■■□□□ 1.46
CLN3-250ENST00000636839 RIMBP2O15034 1052 aa24.18■■□□□ 1.46
CLN3-250ENST00000636839 DPEP1P16444 411 aa24.18■■□□□ 1.46
CLN3-250ENST00000636839 MPNDQ8N594 471 aa24.18■■□□□ 1.46
CLN3-250ENST00000636839 MAGEB6Q8N7X4 407 aa24.18■■□□□ 1.46
CLN3-250ENST00000636839 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.18■■□□□ 1.462e-6■■■■■ 40.7
CLN3-250ENST00000636839 TCRBV5S4A2TA0A5A2 114 aa24.18■■□□□ 1.46
CLN3-250ENST00000636839 CD2BP2O95400 341 aaKnown RBP24.18■■□□□ 1.46
CLN3-250ENST00000636839 KCNA3P22001 575 aa24.18■■□□□ 1.46
CLN3-250ENST00000636839 ILDR2Q71H61 639 aa24.18■■□□□ 1.46
CLN3-250ENST00000636839 LRP2BPQ9P2M1 347 aa24.18■■□□□ 1.46
CLN3-250ENST00000636839 RBM8AQ9Y5S9 174 aaKnown RBP24.18■■□□□ 1.46
CLN3-250ENST00000636839 LTBP1Q14766 1721 aa24.17■■□□□ 1.46
CLN3-250ENST00000636839 ZFYP08048 801 aaPredicted RBP24.17■■□□□ 1.46
CLN3-250ENST00000636839 C15orf52Q6ZUT6 534 aaKnown RBP24.17■■□□□ 1.46
CLN3-250ENST00000636839 APPBP2Q92624 585 aa24.17■■□□□ 1.46
CLN3-250ENST00000636839 DPP8Q6V1X1 898 aaPredicted RBP24.17■■□□□ 1.46
CLN3-250ENST00000636839 CNKSR1Q969H4 720 aa24.17■■□□□ 1.46
CLN3-250ENST00000636839 DDRGK1Q96HY6 314 aa24.17■■□□□ 1.46
CLN3-250ENST00000636839 TAF6LQ9Y6J9 622 aa24.17■■□□□ 1.46
CLN3-250ENST00000636839 TDRD7Q8NHU6 1098 aaKnown RBP24.16■■□□□ 1.46
CLN3-250ENST00000636839 C7orf43Q8WVR3 580 aa24.16■■□□□ 1.46
CLN3-250ENST00000636839 TBC1D2Q9BYX2 928 aa24.16■■□□□ 1.46
CLN3-250ENST00000636839 DUOX1Q9NRD9 1551 aa24.15■■□□□ 1.46
CLN3-250ENST00000636839 MAP3K12Q12852 859 aa24.15■■□□□ 1.46
CLN3-250ENST00000636839 NECTIN1Q15223 517 aa24.15■■□□□ 1.46
CLN3-250ENST00000636839 ZNF804AQ7Z570 1209 aa24.15■■□□□ 1.46
CLN3-250ENST00000636839 TICAM2Q86XR7 235 aa24.15■■□□□ 1.46
CLN3-250ENST00000636839 CD209Q9NNX6 404 aa24.15■■□□□ 1.46
CLN3-250ENST00000636839 MCCP23508 829 aa24.15■■□□□ 1.46
CLN3-250ENST00000636839 LRRFIP1Q32MZ4 808 aaKnown RBP24.15■■□□□ 1.46
CLN3-250ENST00000636839 ZNF384Q8TF68 577 aa24.15■■□□□ 1.46
CLN3-250ENST00000636839 PPP1R1BQ9UD71 204 aaPredicted RBP24.15■■□□□ 1.46
CLN3-250ENST00000636839 SNX14Q9Y5W7 946 aa24.15■■□□□ 1.46
CLN3-250ENST00000636839 SEMA3EO15041 775 aa24.14■■□□□ 1.45
CLN3-250ENST00000636839 FOXP2O15409 715 aa24.14■■□□□ 1.45
CLN3-250ENST00000636839 UBE3CQ15386 1083 aa24.14■■□□□ 1.45
CLN3-250ENST00000636839 ADGRA1Q86SQ6 560 aa24.14■■□□□ 1.45
CLN3-250ENST00000636839 RAI14Q9P0K7 980 aa24.14■■□□□ 1.45
CLN3-250ENST00000636839 EPB41L2O43491 1005 aaKnown RBP24.13■■□□□ 1.45
CLN3-250ENST00000636839 C21orf2O43822 256 aa24.13■■□□□ 1.45
CLN3-250ENST00000636839 HSPD1P10809 573 aaKnown RBP24.13■■□□□ 1.45
CLN3-250ENST00000636839 POLD1P28340 1107 aa24.13■■□□□ 1.45
CLN3-250ENST00000636839 ZSCAN25Q6NSZ9 544 aa24.13■■□□□ 1.45
CLN3-250ENST00000636839 SGIP1Q9BQI5 828 aa24.13■■□□□ 1.45
CLN3-250ENST00000636839 GRIK5Q16478 980 aa24.13■■□□□ 1.45
CLN3-250ENST00000636839 MYH7P12883 1935 aa24.13■■□□□ 1.45
CLN3-250ENST00000636839 GPAA1O43292 621 aa24.12■■□□□ 1.45
CLN3-250ENST00000636839 PRDX5P30044 214 aa24.12■■□□□ 1.45
CLN3-250ENST00000636839 COL9A3Q14050 684 aaPredicted RBP24.12■■□□□ 1.45
CLN3-250ENST00000636839 CREB3L3Q68CJ9 461 aa24.12■■□□□ 1.45
CLN3-250ENST00000636839 DOK7Q18PE1 504 aa24.11■■□□□ 1.45
CLN3-250ENST00000636839 TMX4Q9H1E5 349 aaPredicted RBP24.11■■□□□ 1.45
CLN3-250ENST00000636839 DOCK2Q92608 1830 aa24.11■■□□□ 1.45
CLN3-250ENST00000636839 SLC27A2O14975 620 aa24.11■■□□□ 1.45
CLN3-250ENST00000636839 ADCK5Q3MIX3 580 aa24.11■■□□□ 1.45
CLN3-250ENST00000636839 KLHL34Q8N239 644 aa24.11■■□□□ 1.45
CLN3-250ENST00000636839 MIGA1Q8NAN2 632 aa24.11■■□□□ 1.45
CLN3-250ENST00000636839 UPF3BQ9BZI7 483 aaKnown RBP24.11■■□□□ 1.45
CLN3-250ENST00000636839 IL1R1P14778 569 aa24.1■■□□□ 1.45
CLN3-250ENST00000636839 PTGER2P43116 358 aa24.1■■□□□ 1.45
CLN3-250ENST00000636839 RABEP1Q15276 862 aa24.1■■□□□ 1.45
CLN3-250ENST00000636839 TTLL6Q8N841 843 aa24.1■■□□□ 1.45
CLN3-250ENST00000636839 ZC3H12CQ9C0D7 883 aaKnown RBP24.1■■□□□ 1.45
CLN3-250ENST00000636839 CPA1P15085 419 aa24.1■■□□□ 1.45
CLN3-250ENST00000636839 CYP7A1P22680 504 aa24.1■■□□□ 1.45
CLN3-250ENST00000636839 TTLL5Q6EMB2 1281 aa24.1■■□□□ 1.45
CLN3-250ENST00000636839 ANAPC15P60006 121 aa24.09■■□□□ 1.45
CLN3-250ENST00000636839 MECOMQ03112 1051 aa24.09■■□□□ 1.45
CLN3-250ENST00000636839 KCNB2Q92953 911 aa24.09■■□□□ 1.45
CLN3-250ENST00000636839 PDS5AQ29RF7 1337 aaKnown RBP24.09■■□□□ 1.45
CLN3-250ENST00000636839 ARMT1Q9H993 441 aa24.08■■□□□ 1.45
CLN3-250ENST00000636839 MBD4O95243 580 aa24.08■■□□□ 1.44
CLN3-250ENST00000636839 NEK4P51957 841 aa24.08■■□□□ 1.44
CLN3-250ENST00000636839 ERICH6Q7L0X2 663 aa24.08■■□□□ 1.44
CLN3-250ENST00000636839 NSUN4Q96CB9 384 aaKnown RBP24.08■■□□□ 1.44
CLN3-250ENST00000636839 IL17RAQ96F46 866 aa24.08■■□□□ 1.44
CLN3-250ENST00000636839 STRBPQ96SI9 672 aaKnown RBP24.08■■□□□ 1.44
CLN3-250ENST00000636839 MYH13Q9UKX3 1938 aa24.08■■□□□ 1.44
CLN3-250ENST00000636839 SRCAPQ6ZRS2 3230 aa24.07■■□□□ 1.44
CLN3-250ENST00000636839 DSCC1Q9BVC3 393 aa24.07■■□□□ 1.44
CLN3-250ENST00000636839 KCNQ5Q9NR82 932 aa24.07■■□□□ 1.44
CLN3-250ENST00000636839 LCORLQ8N3X6 602 aa24.06■■□□□ 1.44
CLN3-250ENST00000636839 SPRYD3Q8NCJ5 442 aa24.06■■□□□ 1.44
CLN3-250ENST00000636839 AIDAQ96BJ3 306 aa24.06■■□□□ 1.44
CLN3-250ENST00000636839 U3KPZ7 1027 aaPredicted RBP24.06■■□□□ 1.44
CLN3-250ENST00000636839 SNED1Q8TER0 1413 aa24.06■■□□□ 1.44
CLN3-250ENST00000636839 PRKAB2O43741 272 aa24.06■■□□□ 1.44
CLN3-250ENST00000636839 CYP21A2P08686 494 aa24.06■■□□□ 1.44
CLN3-250ENST00000636839 NAA16Q6N069 864 aaPredicted RBP24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms