RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 C1orf115Q9H7X2 142 aa23.94■■□□□ 1.42
UPF1-212ENST00000601689 CREBZFQ9NS37 354 aa23.94■■□□□ 1.42
UPF1-212ENST00000601689 FAM205AQ6ZU69 1335 aa23.93■■□□□ 1.42
UPF1-212ENST00000601689 PASKQ96RG2 1323 aa23.93■■□□□ 1.42
UPF1-212ENST00000601689 TMEM88BA6NKF7 163 aa23.93■■□□□ 1.42
UPF1-212ENST00000601689 HIRAP54198 1017 aaPredicted RBP23.93■■□□□ 1.42
UPF1-212ENST00000601689 SULF1Q8IWU6 871 aa23.93■■□□□ 1.42
UPF1-212ENST00000601689 HMMRO75330 724 aa23.92■■□□□ 1.42
UPF1-212ENST00000601689 SURF6O75683 361 aaKnown RBP23.92■■□□□ 1.42
UPF1-212ENST00000601689 MFSD14BQ5SR56 506 aa23.92■■□□□ 1.42
UPF1-212ENST00000601689 SSH3Q8TE77 659 aa23.92■■□□□ 1.42
UPF1-212ENST00000601689 MXD3Q9BW11 206 aa23.92■■□□□ 1.42
UPF1-212ENST00000601689 MYH13Q9UKX3 1938 aa23.91■■□□□ 1.42
UPF1-212ENST00000601689 MYO1BO43795 1136 aa23.91■■□□□ 1.42
UPF1-212ENST00000601689 BCAMP50895 628 aa23.91■■□□□ 1.42
UPF1-212ENST00000601689 CHAF1AQ13111 956 aaPredicted RBP23.91■■□□□ 1.42
UPF1-212ENST00000601689 SCARF1Q14162 830 aa23.91■■□□□ 1.42
UPF1-212ENST00000601689 GORABQ5T7V8 394 aa23.91■■□□□ 1.42
UPF1-212ENST00000601689 POLR2AP24928 1970 aaKnown RBP23.91■■□□□ 1.42
UPF1-212ENST00000601689 TRPM7Q96QT4 1865 aa23.9■■□□□ 1.42
UPF1-212ENST00000601689 POLA2Q14181 598 aa23.9■■□□□ 1.42
UPF1-212ENST00000601689 DLGAP5Q15398 846 aa23.9■■□□□ 1.42
UPF1-212ENST00000601689 HSP90AB4PQ58FF6 505 aa23.9■■□□□ 1.42
UPF1-212ENST00000601689 KRT26Q7Z3Y9 468 aa23.9■■□□□ 1.42
UPF1-212ENST00000601689 RPAP2Q8IXW5 612 aaPredicted RBP23.9■■□□□ 1.42
UPF1-212ENST00000601689 JAG2Q9Y219 1238 aa23.9■■□□□ 1.42
UPF1-212ENST00000601689 F8W031 263 aaPredicted RBP23.89■■□□□ 1.41
UPF1-212ENST00000601689 RBM5P52756 815 aaKnown RBP eCLIP23.89■■□□□ 1.41
UPF1-212ENST00000601689 TFCP2Q12800 502 aa23.89■■□□□ 1.41
UPF1-212ENST00000601689 WDR66Q8TBY9 1149 aa23.89■■□□□ 1.41
UPF1-212ENST00000601689 NEUROD6Q96NK8 337 aa23.89■■□□□ 1.41
UPF1-212ENST00000601689 GGA3Q9NZ52 723 aa23.89■■□□□ 1.41
UPF1-212ENST00000601689 IQSEC3Q9UPP2 1182 aaPredicted RBP23.89■■□□□ 1.41
UPF1-212ENST00000601689 A0A1B0GUL7 405 aa23.88■■□□□ 1.41
UPF1-212ENST00000601689 SEMA3EO15041 775 aa23.88■■□□□ 1.41
UPF1-212ENST00000601689 CEP85Q6P2H3 762 aa23.88■■□□□ 1.41
UPF1-212ENST00000601689 ERC1Q8IUD2 1116 aa23.88■■□□□ 1.41
UPF1-212ENST00000601689 GLIS2Q9BZE0 524 aaPredicted RBP23.88■■□□□ 1.41
UPF1-212ENST00000601689 DENND2AQ9ULE3 1009 aa23.88■■□□□ 1.41
UPF1-212ENST00000601689 MAST3O60307 1309 aa23.87■■□□□ 1.41
UPF1-212ENST00000601689 PITPNM2Q9BZ72 1349 aa23.87■■□□□ 1.41
UPF1-212ENST00000601689 EGFRP00533 1210 aa23.87■■□□□ 1.41
UPF1-212ENST00000601689 ANGEL2Q5VTE6 544 aaKnown RBP23.87■■□□□ 1.41
UPF1-212ENST00000601689 USP48Q86UV5 1035 aa23.87■■□□□ 1.41
UPF1-212ENST00000601689 ABT1Q9ULW3 272 aaKnown RBP23.87■■□□□ 1.41
UPF1-212ENST00000601689 TTF2Q9UNY4 1162 aaKnown RBP23.87■■□□□ 1.41
UPF1-212ENST00000601689 SUGT1Q9Y2Z0 365 aa23.87■■□□□ 1.41
UPF1-212ENST00000601689 ZNF646O15015 1829 aaPredicted RBP23.87■■□□□ 1.41
UPF1-212ENST00000601689 TIMM10P62072 90 aa23.86■■□□□ 1.41
UPF1-212ENST00000601689 ZGPATQ8N5A5 531 aaKnown RBP23.86■■□□□ 1.41
UPF1-212ENST00000601689 ZNF408Q9H9D4 720 aa23.86■■□□□ 1.41
UPF1-212ENST00000601689 ZBTB40Q9NUA8 1239 aa23.86■■□□□ 1.41
UPF1-212ENST00000601689 WNT10BO00744 389 aa23.85■■□□□ 1.41
UPF1-212ENST00000601689 CERS5Q8N5B7 392 aa23.85■■□□□ 1.41
UPF1-212ENST00000601689 NOP58Q9Y2X3 529 aaKnown RBP23.85■■□□□ 1.41
UPF1-212ENST00000601689 TRAF5O00463 557 aa23.84■■□□□ 1.41
UPF1-212ENST00000601689 CELF2O95319 508 aaKnown RBP23.84■■□□□ 1.41
UPF1-212ENST00000601689 HTRA3P83110 453 aa23.84■■□□□ 1.41
UPF1-212ENST00000601689 CFAP100Q494V2 611 aa23.84■■□□□ 1.41
UPF1-212ENST00000601689 APOBEC3FQ8IUX4 373 aaKnown RBP23.84■■□□□ 1.41
UPF1-212ENST00000601689 MTMR14Q8NCE2 650 aa23.84■■□□□ 1.41
UPF1-212ENST00000601689 XAGE2Q96GT9 111 aa23.84■■□□□ 1.41
UPF1-212ENST00000601689 GPR108Q9NPR9 543 aa23.84■■□□□ 1.41
UPF1-212ENST00000601689 SERPINA10Q9UK55 444 aa23.84■■□□□ 1.41
UPF1-212ENST00000601689 NBPF9Q3BBW0 867 aa23.83■■□□□ 1.41
UPF1-212ENST00000601689 CCDC102BQ68D86 513 aa23.83■■□□□ 1.41
UPF1-212ENST00000601689 KLRG1Q96E93 195 aa23.83■■□□□ 1.41
UPF1-212ENST00000601689 NF2P35240 595 aa23.82■■□□□ 1.4
UPF1-212ENST00000601689 RRP1P56182 461 aaKnown RBP23.82■■□□□ 1.4
UPF1-212ENST00000601689 CCDC158Q5M9N0 1113 aa23.82■■□□□ 1.4
UPF1-212ENST00000601689 ARAP2Q8WZ64 1704 aa23.81■■□□□ 1.4
UPF1-212ENST00000601689 PHKA1P46020 1223 aa23.81■■□□□ 1.4
UPF1-212ENST00000601689 HDLBPQ00341 1268 aaKnown RBP23.81■■□□□ 1.4
UPF1-212ENST00000601689 DEFB115Q30KQ5 88 aa23.81■■□□□ 1.4
UPF1-212ENST00000601689 C20orf194Q5TEA3 1177 aa23.81■■□□□ 1.4
UPF1-212ENST00000601689 C2orf69Q8N8R5 385 aa23.81■■□□□ 1.4
UPF1-212ENST00000601689 TEKT1Q969V4 418 aa23.81■■□□□ 1.4
UPF1-212ENST00000601689 ZBTB22O15209 634 aa23.8■■□□□ 1.4
UPF1-212ENST00000601689 UQCRFS1P1P0C7P4 283 aa23.8■■□□□ 1.4
UPF1-212ENST00000601689 ADORA1P30542 326 aa23.8■■□□□ 1.4
UPF1-212ENST00000601689 ADM5C9JUS6 153 aa23.79■■□□□ 1.4
UPF1-212ENST00000601689 TNNI3KQ59H18 835 aa23.79■■□□□ 1.4
UPF1-212ENST00000601689 SPTY2D1Q68D10 685 aaPredicted RBP23.79■■□□□ 1.4
UPF1-212ENST00000601689 PAXIP1Q6ZW49 1069 aaPredicted RBP23.79■■□□□ 1.4
UPF1-212ENST00000601689 DNAJC5GQ8N7S2 189 aa23.79■■□□□ 1.4
UPF1-212ENST00000601689 MRIQ9BWK5 157 aa23.79■■□□□ 1.4
UPF1-212ENST00000601689 MKRN1Q9UHC7 482 aaKnown RBP23.79■■□□□ 1.4
UPF1-212ENST00000601689 FPGT-TNNI3KV9GXZ4 949 aa23.79■■□□□ 1.4
UPF1-212ENST00000601689 ECM29Q5VYK3 1845 aa23.79■■□□□ 1.4
UPF1-212ENST00000601689 SPDYE2BA6NHP3 402 aa23.78■■□□□ 1.4
UPF1-212ENST00000601689 LDHBP07195 334 aaKnown RBP23.78■■□□□ 1.4
UPF1-212ENST00000601689 SPDYE6P0CI01 402 aa23.78■■□□□ 1.4
UPF1-212ENST00000601689 ECE1P42892 770 aa23.78■■□□□ 1.4
UPF1-212ENST00000601689 CRKP46108 304 aa23.78■■□□□ 1.4
UPF1-212ENST00000601689 TNFAIP1Q13829 316 aa23.78■■□□□ 1.4
UPF1-212ENST00000601689 SLF2Q8IX21 1173 aa23.78■■□□□ 1.4
UPF1-212ENST00000601689 EXOC6BQ9Y2D4 811 aa23.78■■□□□ 1.4
UPF1-212ENST00000601689 RAB11FIP3O75154 756 aa23.77■■□□□ 1.4
UPF1-212ENST00000601689 TTC39AQ5SRH9 613 aa23.77■■□□□ 1.4
UPF1-212ENST00000601689 CST9Q5W186 159 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms