RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 MICU3Q86XE3 530 aa17.73■□□□□ 0.43
UPF1-204ENST00000596842 SMARCC2Q8TAQ2 1214 aa17.73■□□□□ 0.43
UPF1-204ENST00000596842 DENND2AQ9ULE3 1009 aa17.73■□□□□ 0.43
UPF1-204ENST00000596842 CTIFO43310 598 aaKnown RBP17.73■□□□□ 0.43
UPF1-204ENST00000596842 IMMTQ16891 758 aaKnown RBP17.73■□□□□ 0.43
UPF1-204ENST00000596842 CCDC158Q5M9N0 1113 aa17.73■□□□□ 0.43
UPF1-204ENST00000596842 RBM43Q6ZSC3 357 aaKnown RBP17.73■□□□□ 0.43
UPF1-204ENST00000596842 CARMIL3Q8ND23 1372 aa17.73■□□□□ 0.43
UPF1-204ENST00000596842 SPTLC2O15270 562 aa17.72■□□□□ 0.43
UPF1-204ENST00000596842 SERPINC1P01008 464 aa17.72■□□□□ 0.43
UPF1-204ENST00000596842 MYL10Q9BUA6 226 aa17.72■□□□□ 0.43
UPF1-204ENST00000596842 NFXL1Q6ZNB6 911 aa17.72■□□□□ 0.43
UPF1-204ENST00000596842 FAM89AQ96GI7 184 aa17.72■□□□□ 0.43
UPF1-204ENST00000596842 IDH1O75874 414 aaKnown RBP17.72■□□□□ 0.43
UPF1-204ENST00000596842 GPTP24298 496 aa17.72■□□□□ 0.43
UPF1-204ENST00000596842 PDILTQ8N807 584 aa17.72■□□□□ 0.43
UPF1-204ENST00000596842 PHKBQ93100 1093 aa17.72■□□□□ 0.43
UPF1-204ENST00000596842 LLPHQ9BRT6 129 aaKnown RBP17.72■□□□□ 0.43
UPF1-204ENST00000596842 LTN1O94822 1766 aa17.72■□□□□ 0.43
UPF1-204ENST00000596842 FDPSP14324 419 aaKnown RBP17.71■□□□□ 0.43
UPF1-204ENST00000596842 ILDR1Q86SU0 546 aaPredicted RBP17.71■□□□□ 0.43
UPF1-204ENST00000596842 ATP1A3P13637 1013 aa17.71■□□□□ 0.43
UPF1-204ENST00000596842 TPM4P67936 248 aa17.71■□□□□ 0.43
UPF1-204ENST00000596842 CFAP100Q494V2 611 aa17.71■□□□□ 0.43
UPF1-204ENST00000596842 MRFAP1L1Q96HT8 127 aa17.71■□□□□ 0.43
UPF1-204ENST00000596842 NRDCO43847 1150 aa17.71■□□□□ 0.43
UPF1-204ENST00000596842 FGAP02671 866 aa17.71■□□□□ 0.43
UPF1-204ENST00000596842 ATG9AQ7Z3C6 839 aa17.71■□□□□ 0.43
UPF1-204ENST00000596842 PLBD2Q8NHP8 589 aa17.71■□□□□ 0.43
UPF1-204ENST00000596842 ZNF202O95125 648 aa17.7■□□□□ 0.42
UPF1-204ENST00000596842 TRDNQ13061 729 aa17.7■□□□□ 0.42
UPF1-204ENST00000596842 ZMYM1Q5SVZ6 1142 aa17.7■□□□□ 0.42
UPF1-204ENST00000596842 ZAP70P43403 619 aa17.7■□□□□ 0.42
UPF1-204ENST00000596842 SCARF1Q14162 830 aa17.7■□□□□ 0.42
UPF1-204ENST00000596842 ERCC6LQ2NKX8 1250 aa17.7■□□□□ 0.42
UPF1-204ENST00000596842 CCAR2Q8N163 923 aaKnown RBP17.7■□□□□ 0.42
UPF1-204ENST00000596842 ALDH8A1Q9H2A2 487 aaPredicted RBP17.7■□□□□ 0.42
UPF1-204ENST00000596842 HELLSQ9NRZ9 838 aa17.7■□□□□ 0.42
UPF1-204ENST00000596842 KIAA1468Q9P260 1216 aa17.7■□□□□ 0.42
UPF1-204ENST00000596842 NBPF26B4DH59 902 aa17.7■□□□□ 0.42
UPF1-204ENST00000596842 EYA2O00167 538 aa17.7■□□□□ 0.42
UPF1-204ENST00000596842 ZNF213O14771 459 aa17.7■□□□□ 0.42
UPF1-204ENST00000596842 CAVIN2O95810 425 aa17.7■□□□□ 0.42
UPF1-204ENST00000596842 IL15P40933 162 aaPredicted RBP17.7■□□□□ 0.42
UPF1-204ENST00000596842 RRP12Q5JTH9 1297 aaKnown RBP17.7■□□□□ 0.42
UPF1-204ENST00000596842 NBPF14Q5TI25 921 aa17.7■□□□□ 0.42
UPF1-204ENST00000596842 NBPF10Q6P3W6 841 aaKnown RBP17.7■□□□□ 0.42
UPF1-204ENST00000596842 NBPF15Q8N660 670 aa17.7■□□□□ 0.42
UPF1-204ENST00000596842 ST7Q9NRC1 585 aa17.7■□□□□ 0.42
UPF1-204ENST00000596842 CCZ1BP86790 482 aa17.69■□□□□ 0.42
UPF1-204ENST00000596842 CCZ1P86791 482 aaPredicted RBP17.69■□□□□ 0.42
UPF1-204ENST00000596842 SYNE4Q8N205 404 aa17.69■□□□□ 0.42
UPF1-204ENST00000596842 CTNNA3Q9UI47 895 aa17.69■□□□□ 0.42
UPF1-204ENST00000596842 DSCC1Q9BVC3 393 aa17.69■□□□□ 0.42
UPF1-204ENST00000596842 GTPBP4Q9BZE4 634 aaKnown RBP17.69■□□□□ 0.42
UPF1-204ENST00000596842 PUS7LQ9H0K6 701 aaKnown RBP17.69■□□□□ 0.42
UPF1-204ENST00000596842 DNAI1Q9UI46 699 aa17.69■□□□□ 0.42
UPF1-204ENST00000596842 KIF20AO95235 890 aa17.69■□□□□ 0.42
UPF1-204ENST00000596842 EXOSC10Q01780 885 aaKnown RBP17.69■□□□□ 0.42
UPF1-204ENST00000596842 INCENPQ9NQS7 918 aa17.69■□□□□ 0.42
UPF1-204ENST00000596842 OGFRQ9NZT2 677 aa17.69■□□□□ 0.42
UPF1-204ENST00000596842 FOXO4P98177 505 aa17.68■□□□□ 0.42
UPF1-204ENST00000596842 LINC00301Q8NCQ3 95 aa17.68■□□□□ 0.42
UPF1-204ENST00000596842 ENGASEQ8NFI3 743 aa17.68■□□□□ 0.42
UPF1-204ENST00000596842 CHMP4CQ96CF2 233 aa17.68■□□□□ 0.42
UPF1-204ENST00000596842 CLIC6Q96NY7 704 aa17.68■□□□□ 0.42
UPF1-204ENST00000596842 CCDC66A2RUB6 948 aa17.68■□□□□ 0.42
UPF1-204ENST00000596842 KIF28PB7ZC32 967 aa17.68■□□□□ 0.42
UPF1-204ENST00000596842 KMT5BQ4FZB7 885 aa17.68■□□□□ 0.42
UPF1-204ENST00000596842 MYSM1Q5VVJ2 828 aa17.68■□□□□ 0.42
UPF1-204ENST00000596842 FMR1NBQ8N0W7 255 aaPredicted RBP17.68■□□□□ 0.42
UPF1-204ENST00000596842 XAGE2Q96GT9 111 aa17.68■□□□□ 0.42
UPF1-204ENST00000596842 DCAF5Q96JK2 942 aa17.68■□□□□ 0.42
UPF1-204ENST00000596842 STRN4Q9NRL3 753 aa17.68■□□□□ 0.42
UPF1-204ENST00000596842 ADALQ6DHV7 355 aa17.68■□□□□ 0.42
UPF1-204ENST00000596842 TOM1L2Q6ZVM7 507 aa17.68■□□□□ 0.42
UPF1-204ENST00000596842 KLHL34Q8N239 644 aa17.68■□□□□ 0.42
UPF1-204ENST00000596842 FBXO38Q6PIJ6 1188 aa17.67■□□□□ 0.42
UPF1-204ENST00000596842 HEG1Q9ULI3 1381 aa17.67■□□□□ 0.42
UPF1-204ENST00000596842 SH3TC1Q8TE82 1336 aa17.67■□□□□ 0.42
UPF1-204ENST00000596842 RABL6Q3YEC7 729 aaPredicted RBP17.67■□□□□ 0.42
UPF1-204ENST00000596842 CREBRFQ8IUR6 639 aa17.67■□□□□ 0.42
UPF1-204ENST00000596842 LRRN4CLQ8ND94 238 aa17.67■□□□□ 0.42
UPF1-204ENST00000596842 UBE2Q2LH0YL09 131 aa17.67■□□□□ 0.42
UPF1-204ENST00000596842 DHX16O60231 1041 aaKnown RBP17.67■□□□□ 0.42
UPF1-204ENST00000596842 NEMFO60524 1076 aa17.67■□□□□ 0.42
UPF1-204ENST00000596842 URI1O94763 535 aaPredicted RBP17.67■□□□□ 0.42
UPF1-204ENST00000596842 PFKFB1P16118 471 aa17.67■□□□□ 0.42
UPF1-204ENST00000596842 PNOCQ13519 176 aa17.67■□□□□ 0.42
UPF1-204ENST00000596842 ALG1Q9BT22 464 aa17.67■□□□□ 0.42
UPF1-204ENST00000596842 SLU7O95391 586 aaKnown RBP17.66■□□□□ 0.42
UPF1-204ENST00000596842 SYKP43405 635 aa17.66■□□□□ 0.42
UPF1-204ENST00000596842 HELBQ8NG08 1087 aaPredicted RBP17.66■□□□□ 0.42
UPF1-204ENST00000596842 ATF3P18847 181 aa17.66■□□□□ 0.42
UPF1-204ENST00000596842 METTL24Q5JXM2 366 aa17.66■□□□□ 0.42
UPF1-204ENST00000596842 GPAA1O43292 621 aa17.66■□□□□ 0.42
UPF1-204ENST00000596842 SARM1Q6SZW1 724 aa17.66■□□□□ 0.42
UPF1-204ENST00000596842 NCOA7Q8NI08 942 aa17.66■□□□□ 0.42
UPF1-204ENST00000596842 KCNG4Q8TDN1 519 aa17.66■□□□□ 0.42
UPF1-204ENST00000596842 ZNF274Q96GC6 653 aaPredicted RBP17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 118 ms