RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 MB21D2Q8IYB1 491 aaPredicted RBP26.7■■□□□ 1.87
VPS53-211ENST00000571805 ENGASEQ8NFI3 743 aa26.7■■□□□ 1.87
VPS53-211ENST00000571805 RIPOR2Q9Y4F9 1068 aa26.7■■□□□ 1.87
VPS53-211ENST00000571805 PTGS1P23219 599 aa26.7■■□□□ 1.86
VPS53-211ENST00000571805 PI16Q6UXB8 463 aa26.7■■□□□ 1.86
VPS53-211ENST00000571805 GIGYF2Q6Y7W6 1299 aaKnown RBP26.7■■□□□ 1.86
VPS53-211ENST00000571805 MAP3K15Q6ZN16 1313 aa26.69■■□□□ 1.86
VPS53-211ENST00000571805 CTAGE5O15320 804 aa26.69■■□□□ 1.86
VPS53-211ENST00000571805 DDX60Q8IY21 1712 aaKnown RBP26.69■■□□□ 1.86
VPS53-211ENST00000571805 CDHR2Q9BYE9 1310 aa26.69■■□□□ 1.86
VPS53-211ENST00000571805 AKAP11Q9UKA4 1901 aa26.68■■□□□ 1.86
VPS53-211ENST00000571805 IQCB1Q15051 598 aa26.68■■□□□ 1.86
VPS53-211ENST00000571805 ARHGAP30Q7Z6I6 1101 aaPredicted RBP26.68■■□□□ 1.86
VPS53-211ENST00000571805 PRC1O43663 620 aa26.68■■□□□ 1.86
VPS53-211ENST00000571805 PRKCSHP14314 528 aaPredicted RBP26.68■■□□□ 1.86
VPS53-211ENST00000571805 HLFQ16534 295 aa26.68■■□□□ 1.86
VPS53-211ENST00000571805 ATP2B3Q16720 1220 aa26.68■■□□□ 1.86
VPS53-211ENST00000571805 HSP90AB3PQ58FF7 597 aa26.68■■□□□ 1.86
VPS53-211ENST00000571805 TRIM5Q9C035 493 aa26.68■■□□□ 1.86
VPS53-211ENST00000571805 HPS5Q9UPZ3 1129 aa26.68■■□□□ 1.86
VPS53-211ENST00000571805 STARD3NLO95772 234 aa26.67■■□□□ 1.86
VPS53-211ENST00000571805 ANTXR2P58335 489 aa26.67■■□□□ 1.86
VPS53-211ENST00000571805 TTLL11Q8NHH1 800 aa26.67■■□□□ 1.86
VPS53-211ENST00000571805 CCDC186Q7Z3E2 898 aa26.66■■□□□ 1.86
VPS53-211ENST00000571805 GPAA1O43292 621 aa26.66■■□□□ 1.86
VPS53-211ENST00000571805 MCAMP43121 646 aa26.66■■□□□ 1.86
VPS53-211ENST00000571805 FAM160A1Q05DH4 1040 aa26.66■■□□□ 1.86
VPS53-211ENST00000571805 CCDC73Q6ZRK6 1079 aa26.66■■□□□ 1.86
VPS53-211ENST00000571805 NLRP10Q86W26 655 aa26.66■■□□□ 1.86
VPS53-211ENST00000571805 NRBP1Q9UHY1 535 aa26.66■■□□□ 1.86
VPS53-211ENST00000571805 METTL24Q5JXM2 366 aa26.65■■□□□ 1.86
VPS53-211ENST00000571805 GREM2Q9H772 168 aa26.65■■□□□ 1.86
VPS53-211ENST00000571805 ITGA6P23229 1130 aa26.65■■□□□ 1.86
VPS53-211ENST00000571805 GTF2F1P35269 517 aaKnown RBP eCLIP26.65■■□□□ 1.86
VPS53-211ENST00000571805 LDHAL6AQ6ZMR3 332 aa26.65■■□□□ 1.86
VPS53-211ENST00000571805 C11orf57Q6ZUT1 292 aaPredicted RBP26.65■■□□□ 1.86
VPS53-211ENST00000571805 NCOA7Q8NI08 942 aa26.65■■□□□ 1.86
VPS53-211ENST00000571805 MAP7D2Q96T17 732 aa26.65■■□□□ 1.86
VPS53-211ENST00000571805 RTEL1Q9NZ71 1219 aa26.65■■□□□ 1.86
VPS53-211ENST00000571805 ITGB4P16144 1822 aa26.65■■□□□ 1.86
VPS53-211ENST00000571805 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.64■■□□□ 1.86
VPS53-211ENST00000571805 KLF18A0A0U1RQI7 1052 aa26.64■■□□□ 1.86
VPS53-211ENST00000571805 GPTP24298 496 aa26.64■■□□□ 1.85
VPS53-211ENST00000571805 ME1P48163 572 aa26.64■■□□□ 1.85
VPS53-211ENST00000571805 ZNF512BQ96KM6 892 aaPredicted RBP26.64■■□□□ 1.85
VPS53-211ENST00000571805 PCDHA7Q9UN72 937 aa26.64■■□□□ 1.85
VPS53-211ENST00000571805 ZNF213O14771 459 aa26.63■■□□□ 1.85
VPS53-211ENST00000571805 STX1AQ16623 288 aa26.63■■□□□ 1.85
VPS53-211ENST00000571805 OTUD7BQ6GQQ9 843 aa26.63■■□□□ 1.85
VPS53-211ENST00000571805 FSIP1Q8NA03 581 aa26.63■■□□□ 1.85
VPS53-211ENST00000571805 WDR19Q8NEZ3 1342 aa26.63■■□□□ 1.85
VPS53-211ENST00000571805 DRC7Q8IY82 874 aa26.63■■□□□ 1.85
VPS53-211ENST00000571805 VGLL2Q8N8G2 317 aa26.63■■□□□ 1.85
VPS53-211ENST00000571805 DHX16O60231 1041 aaKnown RBP26.62■■□□□ 1.85
VPS53-211ENST00000571805 KINO60870 393 aaKnown RBP26.62■■□□□ 1.85
VPS53-211ENST00000571805 SARM1Q6SZW1 724 aa26.62■■□□□ 1.85
VPS53-211ENST00000571805 GOLGA8BA8MQT2 603 aa26.62■■□□□ 1.85
VPS53-211ENST00000571805 ADD2P35612 726 aa26.62■■□□□ 1.85
VPS53-211ENST00000571805 CTSWP56202 376 aa26.62■■□□□ 1.85
VPS53-211ENST00000571805 FBXO18Q8NFZ0 1043 aa26.62■■□□□ 1.85
VPS53-211ENST00000571805 DDX24Q9GZR7 859 aaKnown RBP eCLIP26.62■■□□□ 1.853e-7■■■■□ 22.8
VPS53-211ENST00000571805 NBPF3Q9H094 633 aa26.62■■□□□ 1.85
VPS53-211ENST00000571805 CDC25BP30305 580 aa26.61■■□□□ 1.85
VPS53-211ENST00000571805 LRMPQ12912 555 aa26.61■■□□□ 1.85
VPS53-211ENST00000571805 ADALQ6DHV7 355 aa26.61■■□□□ 1.85
VPS53-211ENST00000571805 FMR1NBQ8N0W7 255 aaPredicted RBP26.61■■□□□ 1.85
VPS53-211ENST00000571805 C8orf76Q96K31 380 aa26.61■■□□□ 1.85
VPS53-211ENST00000571805 SLC4A9Q96Q91 983 aa26.61■■□□□ 1.85
VPS53-211ENST00000571805 MYH3P11055 1940 aa26.61■■□□□ 1.85
VPS53-211ENST00000571805 ANKRD18BA2A2Z9 1011 aa26.61■■□□□ 1.85
VPS53-211ENST00000571805 ZSCAN25Q6NSZ9 544 aa26.61■■□□□ 1.85
VPS53-211ENST00000571805 LINC00301Q8NCQ3 95 aa26.61■■□□□ 1.85
VPS53-211ENST00000571805 ORC3Q9UBD5 711 aaPredicted RBP26.61■■□□□ 1.85
VPS53-211ENST00000571805 CYP19A1P11511 503 aaPredicted RBP26.6■■□□□ 1.85
VPS53-211ENST00000571805 GLIPR1L2Q4G1C9 344 aa26.6■■□□□ 1.85
VPS53-211ENST00000571805 RALYLQ86SE5 291 aaKnown RBP26.6■■□□□ 1.85
VPS53-211ENST00000571805 ANKRD36CQ5JPF3 1778 aa26.6■■□□□ 1.85
VPS53-211ENST00000571805 STRCQ7RTU9 1775 aa26.6■■□□□ 1.85
VPS53-211ENST00000571805 LRP6O75581 1613 aa26.6■■□□□ 1.85
VPS53-211ENST00000571805 A0A1W2PQ27 194 aa26.6■■□□□ 1.85
VPS53-211ENST00000571805 A0A1W2PQ64 194 aa26.6■■□□□ 1.85
VPS53-211ENST00000571805 A0A1W2PQD8 194 aa26.6■■□□□ 1.85
VPS53-211ENST00000571805 MRPS27Q92552 414 aaKnown RBP26.6■■□□□ 1.85
VPS53-211ENST00000571805 CLIP2Q9UDT6 1046 aa26.6■■□□□ 1.85
VPS53-211ENST00000571805 ATRNO75882 1429 aa26.59■■□□□ 1.85
VPS53-211ENST00000571805 MYO5AQ9Y4I1 1855 aaKnown RBP26.59■■□□□ 1.85
VPS53-211ENST00000571805 GOLGA6L19H0YKK7 550 aa26.59■■□□□ 1.85
VPS53-211ENST00000571805 CNNM1Q9NRU3 951 aa26.59■■□□□ 1.85
VPS53-211ENST00000571805 CLIC4Q9Y696 253 aa26.59■■□□□ 1.85
VPS53-211ENST00000571805 C4AP0C0L4 1744 aa26.59■■□□□ 1.85
VPS53-211ENST00000571805 C4BP0C0L5 1744 aa26.59■■□□□ 1.85
VPS53-211ENST00000571805 IRS4O14654 1257 aaPredicted RBP26.58■■□□□ 1.85
VPS53-211ENST00000571805 SLC9C2Q5TAH2 1124 aa26.58■■□□□ 1.85
VPS53-211ENST00000571805 PIH1D3Q9NQM4 214 aaKnown RBP26.58■■□□□ 1.85
VPS53-211ENST00000571805 RAB11FIP4Q86YS3 637 aa26.58■■□□□ 1.85
VPS53-211ENST00000571805 ZNF335Q9H4Z2 1342 aaPredicted RBP26.58■■□□□ 1.85
VPS53-211ENST00000571805 TTF1Q15361 905 aaPredicted RBP26.57■■□□□ 1.84
VPS53-211ENST00000571805 CCDC144BQ3MJ40 725 aa26.57■■□□□ 1.84
VPS53-211ENST00000571805 MTERF4Q7Z6M4 381 aaKnown RBP26.57■■□□□ 1.84
VPS53-211ENST00000571805 DHX40Q8IX18 779 aaKnown RBP26.57■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms