RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 CHGBP05060 677 aa36.92■■■■□ 3.5
CTCF-203ENST00000566078 LRRFIP1Q32MZ4 808 aaKnown RBP36.92■■■■□ 3.5
CTCF-203ENST00000566078 KLHL34Q8N239 644 aa36.92■■■■□ 3.5
CTCF-203ENST00000566078 C7orf43Q8WVR3 580 aa36.91■■■■□ 3.5
CTCF-203ENST00000566078 RNF113AO15541 343 aaKnown RBP36.9■■■■□ 3.5
CTCF-203ENST00000566078 DDX24Q9GZR7 859 aaKnown RBP eCLIP36.9■■■■□ 3.5
CTCF-203ENST00000566078 ANO2Q9NQ90 1003 aa36.9■■■■□ 3.5
CTCF-203ENST00000566078 SNED1Q8TER0 1413 aa36.89■■■■□ 3.5
CTCF-203ENST00000566078 PDS5AQ29RF7 1337 aaKnown RBP36.89■■■■□ 3.5
CTCF-203ENST00000566078 IDH1O75874 414 aaKnown RBP36.88■■■■□ 3.49
CTCF-203ENST00000566078 WASHC4Q2M389 1173 aa36.88■■■■□ 3.49
CTCF-203ENST00000566078 CD2APQ9Y5K6 639 aa36.88■■■■□ 3.49
CTCF-203ENST00000566078 ZBTB22O15209 634 aa36.87■■■■□ 3.49
CTCF-203ENST00000566078 C21orf2O43822 256 aa36.87■■■■□ 3.49
CTCF-203ENST00000566078 ZFYP08048 801 aaPredicted RBP36.87■■■■□ 3.49
CTCF-203ENST00000566078 CC2D2BQ6DHV5 1058 aa36.87■■■■□ 3.49
CTCF-203ENST00000566078 USP26Q9BXU7 913 aa36.87■■■■□ 3.49
CTCF-203ENST00000566078 SLFNL1Q499Z3 407 aa36.86■■■■□ 3.49
CTCF-203ENST00000566078 ZSCAN25Q6NSZ9 544 aa36.86■■■■□ 3.49
CTCF-203ENST00000566078 SPON1Q9HCB6 807 aa36.86■■■■□ 3.49
CTCF-203ENST00000566078 RIMBP2O15034 1052 aa36.85■■■■□ 3.49
CTCF-203ENST00000566078 TDRD7Q8NHU6 1098 aaKnown RBP36.85■■■■□ 3.49
CTCF-203ENST00000566078 PIM2Q9P1W9 311 aa36.85■■■■□ 3.49
CTCF-203ENST00000566078 CHAF1AQ13111 956 aaPredicted RBP36.85■■■■□ 3.49
CTCF-203ENST00000566078 ZMYM1Q5SVZ6 1142 aa36.85■■■■□ 3.49
CTCF-203ENST00000566078 EYA3Q99504 573 aa36.85■■■■□ 3.49
CTCF-203ENST00000566078 CD209Q9NNX6 404 aa36.85■■■■□ 3.49
CTCF-203ENST00000566078 HELLSQ9NRZ9 838 aa36.84■■■■□ 3.49
CTCF-203ENST00000566078 MAP3K12Q12852 859 aa36.83■■■■□ 3.49
CTCF-203ENST00000566078 MCMDC2Q4G0Z9 681 aa36.83■■■■□ 3.49
CTCF-203ENST00000566078 KIAA1211Q6ZU35 1233 aa36.83■■■■□ 3.49
CTCF-203ENST00000566078 SEC62Q99442 399 aaKnown RBP36.83■■■■□ 3.49
CTCF-203ENST00000566078 ZC3H12CQ9C0D7 883 aaKnown RBP36.83■■■■□ 3.49
CTCF-203ENST00000566078 WWC3Q9ULE0 1092 aa36.83■■■■□ 3.49
CTCF-203ENST00000566078 ADD2P35612 726 aa36.82■■■■□ 3.49
CTCF-203ENST00000566078 RBM25P49756 843 aaKnown RBP36.82■■■■□ 3.49
CTCF-203ENST00000566078 SLC9C2Q5TAH2 1124 aa36.82■■■■□ 3.49
CTCF-203ENST00000566078 ZNF589Q86UQ0 364 aaPredicted RBP36.82■■■■□ 3.49
CTCF-203ENST00000566078 ABCF2Q9UG63 623 aa36.82■■■■□ 3.49
CTCF-203ENST00000566078 IL1R1P14778 569 aa36.81■■■■□ 3.48
CTCF-203ENST00000566078 CCDC93Q567U6 631 aa36.81■■■■□ 3.48
CTCF-203ENST00000566078 RTFDC1Q9BY42 306 aaPredicted RBP36.81■■■■□ 3.48
CTCF-203ENST00000566078 LSG1Q9H089 658 aaKnown RBP36.81■■■■□ 3.48
CTCF-203ENST00000566078 LRP2BPQ9P2M1 347 aa36.81■■■■□ 3.48
CTCF-203ENST00000566078 FER1L6Q2WGJ9 1857 aa36.81■■■■□ 3.48
CTCF-203ENST00000566078 ARFGEF1Q9Y6D6 1849 aa36.81■■■■□ 3.48
CTCF-203ENST00000566078 PDE6AP16499 860 aa36.81■■■■□ 3.48
CTCF-203ENST00000566078 MAST3O60307 1309 aa36.8■■■■□ 3.48
CTCF-203ENST00000566078 CCDC129Q6ZRS4 1044 aa36.8■■■■□ 3.48
CTCF-203ENST00000566078 APPBP2Q92624 585 aa36.8■■■■□ 3.48
CTCF-203ENST00000566078 JAG2Q9Y219 1238 aa36.8■■■■□ 3.48
CTCF-203ENST00000566078 CCDC171Q6TFL3 1326 aa36.78■■■■□ 3.48
CTCF-203ENST00000566078 ZNF532Q9HCE3 1301 aa36.78■■■■□ 3.48
CTCF-203ENST00000566078 GRIPAP1Q4V328 841 aa36.78■■■■□ 3.48
CTCF-203ENST00000566078 DALRD3Q5D0E6 543 aaKnown RBP36.78■■■■□ 3.48
CTCF-203ENST00000566078 COA1Q9GZY4 146 aa36.78■■■■□ 3.48
CTCF-203ENST00000566078 M0R2C6 588 aa36.77■■■■□ 3.48
CTCF-203ENST00000566078 ANP32AP39687 249 aaKnown RBP36.77■■■■□ 3.48
CTCF-203ENST00000566078 UBE3CQ15386 1083 aa36.77■■■■□ 3.48
CTCF-203ENST00000566078 MAGEB6Q8N7X4 407 aa36.77■■■■□ 3.48
CTCF-203ENST00000566078 OSBP2Q969R2 916 aa36.77■■■■□ 3.48
CTCF-203ENST00000566078 EPB41L2O43491 1005 aaKnown RBP36.77■■■■□ 3.48
CTCF-203ENST00000566078 RAI14Q9P0K7 980 aa36.77■■■■□ 3.48
CTCF-203ENST00000566078 ZNF646O15015 1829 aaPredicted RBP36.76■■■■□ 3.48
CTCF-203ENST00000566078 PTH1RQ03431 593 aa36.76■■■■□ 3.48
CTCF-203ENST00000566078 RTKN2Q8IZC4 609 aa36.76■■■■□ 3.48
CTCF-203ENST00000566078 SUPT20HQ8NEM7 779 aa36.76■■■■□ 3.48
CTCF-203ENST00000566078 WDR66Q8TBY9 1149 aa36.76■■■■□ 3.48
CTCF-203ENST00000566078 TCRBV5S4A2TA0A5A2 114 aa36.75■■■■□ 3.47
CTCF-203ENST00000566078 SALL1Q9NSC2 1324 aa36.75■■■■□ 3.47
CTCF-203ENST00000566078 SOGA3Q5TF21 947 aa36.74■■■■□ 3.47
CTCF-203ENST00000566078 SCN9AQ15858 1988 aa36.74■■■■□ 3.47
CTCF-203ENST00000566078 PSME4Q14997 1843 aa36.74■■■■□ 3.47
CTCF-203ENST00000566078 MYH2Q9UKX2 1941 aa36.74■■■■□ 3.47
CTCF-203ENST00000566078 G3V3G9 751 aa36.74■■■■□ 3.47
CTCF-203ENST00000566078 MCCP23508 829 aa36.74■■■■□ 3.47
CTCF-203ENST00000566078 DOK7Q18PE1 504 aa36.74■■■■□ 3.47
CTCF-203ENST00000566078 DCAF8Q5TAQ9 597 aa36.74■■■■□ 3.47
CTCF-203ENST00000566078 ERICH6Q7L0X2 663 aa36.74■■■■□ 3.47
CTCF-203ENST00000566078 ZGPATQ8N5A5 531 aaKnown RBP36.73■■■■□ 3.47
CTCF-203ENST00000566078 PUS7LQ9H0K6 701 aaKnown RBP36.73■■■■□ 3.47
CTCF-203ENST00000566078 NLGN2Q8NFZ4 835 aa36.71■■■■□ 3.47
CTCF-203ENST00000566078 SPTY2D1Q68D10 685 aaPredicted RBP36.7■■■■□ 3.47
CTCF-203ENST00000566078 PSMD1Q99460 953 aa36.7■■■■□ 3.47
CTCF-203ENST00000566078 GOLGB1Q14789 3259 aaKnown RBP36.7■■■■□ 3.47
CTCF-203ENST00000566078 PRDX5P30044 214 aa36.7■■■■□ 3.47
CTCF-203ENST00000566078 AOC3Q16853 763 aa36.7■■■■□ 3.47
CTCF-203ENST00000566078 FAM205AQ6ZU69 1335 aa36.69■■■■□ 3.46
CTCF-203ENST00000566078 DBNDD1Q9H9R9 158 aa36.69■■■■□ 3.46
CTCF-203ENST00000566078 KIAA2012Q0VF49 1180 aa36.68■■■■□ 3.46
CTCF-203ENST00000566078 MAP4K1Q92918 833 aa36.68■■■■□ 3.46
CTCF-203ENST00000566078 GPAA1O43292 621 aa36.67■■■■□ 3.46
CTCF-203ENST00000566078 CYP7A1P22680 504 aa36.67■■■■□ 3.46
CTCF-203ENST00000566078 HSPA4P34932 840 aa36.67■■■■□ 3.46
CTCF-203ENST00000566078 GTF2IP78347 998 aa36.67■■■■□ 3.46
CTCF-203ENST00000566078 MECOMQ03112 1051 aa36.67■■■■□ 3.46
CTCF-203ENST00000566078 NAA16Q6N069 864 aaPredicted RBP36.67■■■■□ 3.46
CTCF-203ENST00000566078 FBXW7Q969H0 707 aa36.67■■■■□ 3.46
CTCF-203ENST00000566078 NSUN4Q96CB9 384 aaKnown RBP36.67■■■■□ 3.46
CTCF-203ENST00000566078 BCS1LQ9Y276 419 aa36.67■■■■□ 3.46
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms