RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 KIAA1211Q6ZU35 1233 aa13.53□□□□□ -0.24
USP3-218ENST00000560202 ZNF219Q9P2Y4 722 aaPredicted RBP13.53□□□□□ -0.24
USP3-218ENST00000560202 COL1A1P02452 1464 aaPredicted RBP13.52□□□□□ -0.24
USP3-218ENST00000560202 PDS5AQ29RF7 1337 aaKnown RBP13.52□□□□□ -0.24
USP3-218ENST00000560202 LTBP1Q14766 1721 aa13.52□□□□□ -0.25
USP3-218ENST00000560202 EPB41L2O43491 1005 aaKnown RBP13.52□□□□□ -0.25
USP3-218ENST00000560202 WASHC4Q2M389 1173 aa13.52□□□□□ -0.25
USP3-218ENST00000560202 SLFNL1Q499Z3 407 aa13.52□□□□□ -0.25
USP3-218ENST00000560202 MCMDC2Q4G0Z9 681 aa13.52□□□□□ -0.25
USP3-218ENST00000560202 ZMYM1Q5SVZ6 1142 aa13.52□□□□□ -0.25
USP3-218ENST00000560202 CC2D2BQ6DHV5 1058 aa13.52□□□□□ -0.25
USP3-218ENST00000560202 TDRD7Q8NHU6 1098 aaKnown RBP13.52□□□□□ -0.25
USP3-218ENST00000560202 HELLSQ9NRZ9 838 aa13.52□□□□□ -0.25
USP3-218ENST00000560202 ADD2P35612 726 aa13.51□□□□□ -0.25
USP3-218ENST00000560202 ANP32AP39687 249 aaKnown RBP13.51□□□□□ -0.25
USP3-218ENST00000560202 MAP3K12Q12852 859 aa13.51□□□□□ -0.25
USP3-218ENST00000560202 SLC9C2Q5TAH2 1124 aa13.51□□□□□ -0.25
USP3-218ENST00000560202 SEC62Q99442 399 aaKnown RBP13.51□□□□□ -0.25
USP3-218ENST00000560202 LSG1Q9H089 658 aaKnown RBP13.51□□□□□ -0.25
USP3-218ENST00000560202 CD209Q9NNX6 404 aa13.51□□□□□ -0.25
USP3-218ENST00000560202 PPP1R1BQ9UD71 204 aaPredicted RBP13.51□□□□□ -0.25
USP3-218ENST00000560202 CD2APQ9Y5K6 639 aa13.51□□□□□ -0.25
USP3-218ENST00000560202 KIF13BQ9NQT8 1826 aa13.51□□□□□ -0.25
USP3-218ENST00000560202 RIMBP2O15034 1052 aa13.5□□□□□ -0.25
USP3-218ENST00000560202 C21orf2O43822 256 aa13.5□□□□□ -0.25
USP3-218ENST00000560202 IL1R1P14778 569 aa13.5□□□□□ -0.25
USP3-218ENST00000560202 ZNF589Q86UQ0 364 aaPredicted RBP13.5□□□□□ -0.25
USP3-218ENST00000560202 EYA3Q99504 573 aa13.5□□□□□ -0.25
USP3-218ENST00000560202 ZC3H12CQ9C0D7 883 aaKnown RBP13.5□□□□□ -0.25
USP3-218ENST00000560202 PIM2Q9P1W9 311 aa13.5□□□□□ -0.25
USP3-218ENST00000560202 LRP2BPQ9P2M1 347 aa13.5□□□□□ -0.25
USP3-218ENST00000560202 SLX4Q8IY92 1834 aa13.5□□□□□ -0.25
USP3-218ENST00000560202 DUOX1Q9NRD9 1551 aa13.5□□□□□ -0.25
USP3-218ENST00000560202 PDE6AP16499 860 aa13.5□□□□□ -0.25
USP3-218ENST00000560202 CHAF1AQ13111 956 aaPredicted RBP13.5□□□□□ -0.25
USP3-218ENST00000560202 UBE3CQ15386 1083 aa13.5□□□□□ -0.25
USP3-218ENST00000560202 APPBP2Q92624 585 aa13.5□□□□□ -0.25
USP3-218ENST00000560202 OSBP2Q969R2 916 aa13.5□□□□□ -0.25
USP3-218ENST00000560202 RTFDC1Q9BY42 306 aaPredicted RBP13.5□□□□□ -0.25
USP3-218ENST00000560202 SPON1Q9HCB6 807 aa13.5□□□□□ -0.25
USP3-218ENST00000560202 ABCF2Q9UG63 623 aa13.5□□□□□ -0.25
USP3-218ENST00000560202 WWC3Q9ULE0 1092 aa13.5□□□□□ -0.25
USP3-218ENST00000560202 DLEC1Q9Y238 1755 aa13.49□□□□□ -0.25
USP3-218ENST00000560202 MAST3O60307 1309 aa13.49□□□□□ -0.25
USP3-218ENST00000560202 PTH1RQ03431 593 aa13.49□□□□□ -0.25
USP3-218ENST00000560202 GRIPAP1Q4V328 841 aa13.49□□□□□ -0.25
USP3-218ENST00000560202 CCDC129Q6ZRS4 1044 aa13.49□□□□□ -0.25
USP3-218ENST00000560202 KLHL34Q8N239 644 aa13.49□□□□□ -0.25
USP3-218ENST00000560202 COA1Q9GZY4 146 aa13.49□□□□□ -0.25
USP3-218ENST00000560202 SNED1Q8TER0 1413 aa13.49□□□□□ -0.25
USP3-218ENST00000560202 CCDC171Q6TFL3 1326 aa13.48□□□□□ -0.25
USP3-218ENST00000560202 ZNF532Q9HCE3 1301 aa13.48□□□□□ -0.25
USP3-218ENST00000560202 TCRBV5S4A2TA0A5A2 114 aa13.48□□□□□ -0.25
USP3-218ENST00000560202 M0R2C6 588 aa13.48□□□□□ -0.25
USP3-218ENST00000560202 MCCP23508 829 aa13.48□□□□□ -0.25
USP3-218ENST00000560202 CCDC93Q567U6 631 aa13.48□□□□□ -0.25
USP3-218ENST00000560202 MAGEB6Q8N7X4 407 aa13.48□□□□□ -0.25
USP3-218ENST00000560202 WDR66Q8TBY9 1149 aa13.48□□□□□ -0.25
USP3-218ENST00000560202 PUS7LQ9H0K6 701 aaKnown RBP13.48□□□□□ -0.25
USP3-218ENST00000560202 RAI14Q9P0K7 980 aa13.48□□□□□ -0.25
USP3-218ENST00000560202 CACNA1SQ13698 1873 aa13.48□□□□□ -0.25
USP3-218ENST00000560202 DALRD3Q5D0E6 543 aaKnown RBP13.47□□□□□ -0.25
USP3-218ENST00000560202 RTKN2Q8IZC4 609 aa13.47□□□□□ -0.25
USP3-218ENST00000560202 SUPT20HQ8NEM7 779 aa13.47□□□□□ -0.25
USP3-218ENST00000560202 MAP4K1Q92918 833 aa13.47□□□□□ -0.25
USP3-218ENST00000560202 KIF2CQ99661 725 aa13.47□□□□□ -0.25
USP3-218ENST00000560202 JAG2Q9Y219 1238 aa13.47□□□□□ -0.25
USP3-218ENST00000560202 SALL1Q9NSC2 1324 aa13.47□□□□□ -0.25
USP3-218ENST00000560202 KIAA1551Q9HCM1 1747 aa13.47□□□□□ -0.25
USP3-218ENST00000560202 HSPA4P34932 840 aa13.47□□□□□ -0.25
USP3-218ENST00000560202 ZGPATQ8N5A5 531 aaKnown RBP13.47□□□□□ -0.25
USP3-218ENST00000560202 IPO9Q96P70 1041 aaKnown RBP13.47□□□□□ -0.25
USP3-218ENST00000560202 G3V3G9 751 aa13.46□□□□□ -0.26
USP3-218ENST00000560202 DOK7Q18PE1 504 aa13.46□□□□□ -0.26
USP3-218ENST00000560202 DCAF8Q5TAQ9 597 aa13.46□□□□□ -0.26
USP3-218ENST00000560202 SOGA3Q5TF21 947 aa13.46□□□□□ -0.26
USP3-218ENST00000560202 SPTY2D1Q68D10 685 aaPredicted RBP13.46□□□□□ -0.26
USP3-218ENST00000560202 DOCK2Q92608 1830 aa13.45□□□□□ -0.26
USP3-218ENST00000560202 GPAA1O43292 621 aa13.45□□□□□ -0.26
USP3-218ENST00000560202 IGSF3O75054 1194 aa13.45□□□□□ -0.26
USP3-218ENST00000560202 CYP7A1P22680 504 aa13.45□□□□□ -0.26
USP3-218ENST00000560202 PRDX5P30044 214 aa13.45□□□□□ -0.26
USP3-218ENST00000560202 VPS53Q5VIR6 699 aa13.45□□□□□ -0.26
USP3-218ENST00000560202 PSMD1Q99460 953 aa13.45□□□□□ -0.26
USP3-218ENST00000560202 PALD1Q9ULE6 856 aa13.45□□□□□ -0.26
USP3-218ENST00000560202 RBM8AQ9Y5S9 174 aaKnown RBP13.45□□□□□ -0.26
USP3-218ENST00000560202 FAM205AQ6ZU69 1335 aa13.45□□□□□ -0.26
USP3-218ENST00000560202 HSPD1P10809 573 aaKnown RBP13.44□□□□□ -0.26
USP3-218ENST00000560202 ANAPC15P60006 121 aa13.44□□□□□ -0.26
USP3-218ENST00000560202 MECOMQ03112 1051 aa13.44□□□□□ -0.26
USP3-218ENST00000560202 KIAA2012Q0VF49 1180 aa13.44□□□□□ -0.26
USP3-218ENST00000560202 NECTIN1Q15223 517 aa13.44□□□□□ -0.26
USP3-218ENST00000560202 NAA16Q6N069 864 aaPredicted RBP13.44□□□□□ -0.26
USP3-218ENST00000560202 TMED8Q6PL24 325 aaPredicted RBP13.44□□□□□ -0.26
USP3-218ENST00000560202 PODNQ7Z5L7 613 aa13.44□□□□□ -0.26
USP3-218ENST00000560202 TBC1D22AQ8WUA7 517 aa13.44□□□□□ -0.26
USP3-218ENST00000560202 NSUN4Q96CB9 384 aaKnown RBP13.44□□□□□ -0.26
USP3-218ENST00000560202 DDRGK1Q96HY6 314 aa13.44□□□□□ -0.26
USP3-218ENST00000560202 DSCC1Q9BVC3 393 aa13.44□□□□□ -0.26
USP3-218ENST00000560202 LDHBP07195 334 aaKnown RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms