RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 R3HDM1Q15032 1099 aaKnown RBP20.06■□□□□ 0.8
LDLR-206ENST00000557958 GRAPLQ8TC17 118 aaPredicted RBP20.06■□□□□ 0.8
LDLR-206ENST00000557958 CYP2E1P05181 493 aaPredicted RBP20.05■□□□□ 0.8
LDLR-206ENST00000557958 CTNNA3Q9UI47 895 aa20.05■□□□□ 0.8
LDLR-206ENST00000557958 ZBTB7AO95365 584 aa20.05■□□□□ 0.8
LDLR-206ENST00000557958 RPS6KB1P23443 525 aa20.05■□□□□ 0.8
LDLR-206ENST00000557958 PHKA1P46020 1223 aa20.05■□□□□ 0.8
LDLR-206ENST00000557958 GSE1Q14687 1217 aa20.05■□□□□ 0.8
LDLR-206ENST00000557958 HSPD1P10809 573 aaKnown RBP20.04■□□□□ 0.8
LDLR-206ENST00000557958 PDE6BP35913 854 aa20.04■□□□□ 0.8
LDLR-206ENST00000557958 CRY2Q49AN0 593 aa20.04■□□□□ 0.8
LDLR-206ENST00000557958 NEK1Q96PY6 1258 aa20.04■□□□□ 0.8
LDLR-206ENST00000557958 WTIPA6NIX2 430 aaPredicted RBP20.03■□□□□ 0.8
LDLR-206ENST00000557958 CHGBP05060 677 aa20.03■□□□□ 0.8
LDLR-206ENST00000557958 SLC51AQ86UW1 340 aa20.03■□□□□ 0.8
LDLR-206ENST00000557958 ATF5Q9Y2D1 282 aaPredicted RBP20.03■□□□□ 0.8
LDLR-206ENST00000557958 CPA1P15085 419 aa20.03■□□□□ 0.8
LDLR-206ENST00000557958 SKOR2Q2VWA4 1001 aaPredicted RBP20.03■□□□□ 0.8
LDLR-206ENST00000557958 SPATA5Q8NB90 893 aa20.03■□□□□ 0.8
LDLR-206ENST00000557958 OSBP2Q969R2 916 aa20.03■□□□□ 0.8
LDLR-206ENST00000557958 ZNF622Q969S3 477 aaKnown RBP eCLIP20.03■□□□□ 0.8
LDLR-206ENST00000557958 ANKIB1Q9P2G1 1089 aa20.03■□□□□ 0.8
LDLR-206ENST00000557958 M0R2C6 588 aa20.02■□□□□ 0.8
LDLR-206ENST00000557958 CYP21A2P08686 494 aa20.02■□□□□ 0.8
LDLR-206ENST00000557958 UBE3CQ15386 1083 aa20.02■□□□□ 0.8
LDLR-206ENST00000557958 PI16Q6UXB8 463 aa20.02■□□□□ 0.8
LDLR-206ENST00000557958 GNL3LQ9NVN8 582 aaKnown RBP20.02■□□□□ 0.8
LDLR-206ENST00000557958 PSDA5PKW4 1024 aaPredicted RBP20.01■□□□□ 0.79
LDLR-206ENST00000557958 ADD2P35612 726 aa20.01■□□□□ 0.79
LDLR-206ENST00000557958 UBE4AQ14139 1066 aa20.01■□□□□ 0.79
LDLR-206ENST00000557958 SLC9C2Q5TAH2 1124 aa20.01■□□□□ 0.79
LDLR-206ENST00000557958 SLC16A10Q8TF71 515 aa20.01■□□□□ 0.79
LDLR-206ENST00000557958 CASZ1Q86V15 1759 aa20.01■□□□□ 0.79
LDLR-206ENST00000557958 IDH1O75874 414 aaKnown RBP20.01■□□□□ 0.79
LDLR-206ENST00000557958 BAG4O95429 457 aaKnown RBP20.01■□□□□ 0.79
LDLR-206ENST00000557958 MAP3K12Q12852 859 aa20.01■□□□□ 0.79
LDLR-206ENST00000557958 C2CD5Q86YS7 1000 aa20.01■□□□□ 0.79
LDLR-206ENST00000557958 SMC3Q9UQE7 1217 aa20.01■□□□□ 0.79
LDLR-206ENST00000557958 AKAP11Q9UKA4 1901 aa20■□□□□ 0.79
LDLR-206ENST00000557958 TRAK2O60296 914 aa20■□□□□ 0.79
LDLR-206ENST00000557958 SRGNP10124 158 aa20■□□□□ 0.79
LDLR-206ENST00000557958 PDIA4P13667 645 aaKnown RBP20■□□□□ 0.79
LDLR-206ENST00000557958 ANKRD2Q9GZV1 360 aa20■□□□□ 0.79
LDLR-206ENST00000557958 MYH7P12883 1935 aa19.99■□□□□ 0.79
LDLR-206ENST00000557958 KLRG2A4D1S0 409 aaPredicted RBP19.99■□□□□ 0.79
LDLR-206ENST00000557958 IMMTQ16891 758 aaKnown RBP19.99■□□□□ 0.79
LDLR-206ENST00000557958 WDR33Q9C0J8 1336 aaKnown RBP19.99■□□□□ 0.79
LDLR-206ENST00000557958 H0YIN7 160 aa19.99■□□□□ 0.79
LDLR-206ENST00000557958 BRD1O95696 1058 aa19.99■□□□□ 0.79
LDLR-206ENST00000557958 NPR1P16066 1061 aa19.99■□□□□ 0.79
LDLR-206ENST00000557958 BCAMP50895 628 aa19.99■□□□□ 0.79
LDLR-206ENST00000557958 RASGRF1Q13972 1273 aa19.99■□□□□ 0.79
LDLR-206ENST00000557958 SLFNL1Q499Z3 407 aa19.99■□□□□ 0.79
LDLR-206ENST00000557958 CAVIN4Q5BKX8 364 aa19.99■□□□□ 0.79
LDLR-206ENST00000557958 CRAMP1Q96RY5 1269 aa19.99■□□□□ 0.79
LDLR-206ENST00000557958 PIH1D3Q9NQM4 214 aaKnown RBP19.99■□□□□ 0.79
LDLR-206ENST00000557958 NSFL1CQ9UNZ2 370 aaKnown RBP19.99■□□□□ 0.79
LDLR-206ENST00000557958 GPAA1O43292 621 aa19.98■□□□□ 0.79
LDLR-206ENST00000557958 BBOX1O75936 387 aa19.98■□□□□ 0.79
LDLR-206ENST00000557958 CHRNA5P30532 468 aa19.98■□□□□ 0.79
LDLR-206ENST00000557958 HOXA10P31260 410 aaPredicted RBP19.98■□□□□ 0.79
LDLR-206ENST00000557958 PKP1Q13835 747 aa19.98■□□□□ 0.79
LDLR-206ENST00000557958 PDE6AP16499 860 aa19.97■□□□□ 0.79
LDLR-206ENST00000557958 GYG1P46976 350 aa19.97■□□□□ 0.79
LDLR-206ENST00000557958 FGD1P98174 961 aa19.97■□□□□ 0.79
LDLR-206ENST00000557958 VPS37DQ86XT2 251 aa19.97■□□□□ 0.79
LDLR-206ENST00000557958 MASTLQ96GX5 879 aa19.97■□□□□ 0.79
LDLR-206ENST00000557958 PUS7LQ9H0K6 701 aaKnown RBP19.97■□□□□ 0.79
LDLR-206ENST00000557958 PPEF1O14829 653 aaPredicted RBP19.96■□□□□ 0.79
LDLR-206ENST00000557958 ALDH1B1P30837 517 aa19.96■□□□□ 0.79
LDLR-206ENST00000557958 CCDC83Q8IWF9 413 aa19.96■□□□□ 0.79
LDLR-206ENST00000557958 ZNF219Q9P2Y4 722 aaPredicted RBP19.96■□□□□ 0.79
LDLR-206ENST00000557958 IQSEC3Q9UPP2 1182 aaPredicted RBP19.96■□□□□ 0.79
LDLR-206ENST00000557958 TAF6LQ9Y6J9 622 aa19.96■□□□□ 0.79
LDLR-206ENST00000557958 QSER1Q2KHR3 1735 aa19.96■□□□□ 0.79
LDLR-206ENST00000557958 ME3Q16798 604 aa19.96■□□□□ 0.79
LDLR-206ENST00000557958 DHX32Q7L7V1 743 aaKnown RBP19.96■□□□□ 0.79
LDLR-206ENST00000557958 PPP1R1BQ9UD71 204 aaPredicted RBP19.96■□□□□ 0.79
LDLR-206ENST00000557958 TPCN1Q9ULQ1 816 aa19.96■□□□□ 0.79
LDLR-206ENST00000557958 ZNF532Q9HCE3 1301 aa19.96■□□□□ 0.79
LDLR-206ENST00000557958 GPSM2P81274 684 aa19.95■□□□□ 0.78
LDLR-206ENST00000557958 ILDR2Q71H61 639 aa19.95■□□□□ 0.78
LDLR-206ENST00000557958 AIDAQ96BJ3 306 aa19.95■□□□□ 0.78
LDLR-206ENST00000557958 CHMP4CQ96CF2 233 aa19.95■□□□□ 0.78
LDLR-206ENST00000557958 LARP6Q9BRS8 491 aaKnown RBP19.95■□□□□ 0.78
LDLR-206ENST00000557958 ZDHHC9Q9Y397 364 aa19.95■□□□□ 0.78
LDLR-206ENST00000557958 ZNF804BA4D1E1 1349 aa19.95■□□□□ 0.78
LDLR-206ENST00000557958 KLRK1P26718 216 aa19.94■□□□□ 0.78
LDLR-206ENST00000557958 POLD1P28340 1107 aa19.94■□□□□ 0.78
LDLR-206ENST00000557958 TOB2Q14106 344 aaPredicted RBP19.94■□□□□ 0.78
LDLR-206ENST00000557958 NRXN2Q9P2S2 1712 aa19.94■□□□□ 0.78
LDLR-206ENST00000557958 E7EWF7 191 aa19.94■□□□□ 0.78
LDLR-206ENST00000557958 LARGE1O95461 756 aa19.94■□□□□ 0.78
LDLR-206ENST00000557958 OLFM4Q6UX06 510 aa19.94■□□□□ 0.78
LDLR-206ENST00000557958 KLHL34Q8N239 644 aa19.94■□□□□ 0.78
LDLR-206ENST00000557958 GPR101Q96P66 508 aaPredicted RBP19.94■□□□□ 0.78
LDLR-206ENST00000557958 MTFR1LQ9H019 292 aa19.94■□□□□ 0.78
LDLR-206ENST00000557958 TMX4Q9H1E5 349 aaPredicted RBP19.94■□□□□ 0.78
LDLR-206ENST00000557958 ANKRD31Q8N7Z5 1873 aa19.93■□□□□ 0.78
LDLR-206ENST00000557958 SEMA3EO15041 775 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms