RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 SBNO2Q9Y2G9 1366 aa4.59□□□□□ -1.67
TRAV28-201ENST00000557548 MRVI1Q9Y6F6 885 aa4.59□□□□□ -1.67
TRAV28-201ENST00000557548 MRPL42Q9Y6G3 142 aaKnown RBP4.59□□□□□ -1.67
TRAV28-201ENST00000557548 FIGNL2A6NMB9 653 aa4.58□□□□□ -1.68
TRAV28-201ENST00000557548 FAM160A1Q05DH4 1040 aa4.58□□□□□ -1.68
TRAV28-201ENST00000557548 SERINC3Q13530 473 aa4.58□□□□□ -1.68
TRAV28-201ENST00000557548 GRIN2CQ14957 1233 aa4.58□□□□□ -1.68
TRAV28-201ENST00000557548 TCEAL1Q15170 157 aa4.58□□□□□ -1.68
TRAV28-201ENST00000557548 NFE2L2Q16236 605 aa4.58□□□□□ -1.68
TRAV28-201ENST00000557548 TPTE2Q6XPS3 522 aa4.58□□□□□ -1.68
TRAV28-201ENST00000557548 DTHD1Q6ZMT9 781 aa4.58□□□□□ -1.68
TRAV28-201ENST00000557548 ZNF296Q8WUU4 475 aaPredicted RBP4.58□□□□□ -1.68
TRAV28-201ENST00000557548 MRFAP1L1Q96HT8 127 aa4.58□□□□□ -1.68
TRAV28-201ENST00000557548 EAF1Q96JC9 268 aaPredicted RBP4.58□□□□□ -1.68
TRAV28-201ENST00000557548 CRISPLD1Q9H336 500 aa4.58□□□□□ -1.68
TRAV28-201ENST00000557548 LIN7BQ9HAP6 207 aa4.58□□□□□ -1.68
TRAV28-201ENST00000557548 MBIPQ9NS73 344 aa4.58□□□□□ -1.68
TRAV28-201ENST00000557548 GINM1Q9NU53 330 aa4.58□□□□□ -1.68
TRAV28-201ENST00000557548 PPM1HQ9ULR3 514 aa4.58□□□□□ -1.68
TRAV28-201ENST00000557548 TMEM238LA0A1B0GVL6 79 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 HYAL3O43820 417 aaPredicted RBP4.57□□□□□ -1.68
TRAV28-201ENST00000557548 MMP20O60882 483 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 CELA3AP09093 270 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 ACPPP15309 386 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 TARSP26639 723 aaKnown RBP4.57□□□□□ -1.68
TRAV28-201ENST00000557548 ETFBP38117 255 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 CHRNA4P43681 627 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 RSPO4Q2I0M5 234 aaPredicted RBP4.57□□□□□ -1.68
TRAV28-201ENST00000557548 NBPF6Q5VWK0 638 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 ANKS3Q6ZW76 656 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 PGBD3Q8N328 593 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 PHC3Q8NDX5 983 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 OR13H1Q8NG92 308 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 SPACA7Q96KW9 195 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 RHOVQ96L33 236 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 NBPF4Q96M43 638 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 TCF12Q99081 682 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 SALL4Q9UJQ4 1053 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 KCNH4Q9UQ05 1017 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 TLR6Q9Y2C9 796 aa4.57□□□□□ -1.68
TRAV28-201ENST00000557548 IGF1RP08069 1367 aa4.56□□□□□ -1.68
TRAV28-201ENST00000557548 RARAP10276 462 aa4.56□□□□□ -1.68
TRAV28-201ENST00000557548 XRCC5P13010 732 aaKnown RBP4.56□□□□□ -1.68
TRAV28-201ENST00000557548 SOX9P48436 509 aa4.56□□□□□ -1.68
TRAV28-201ENST00000557548 LIG3P49916 1009 aa4.56□□□□□ -1.68
TRAV28-201ENST00000557548 SFSWAPQ12872 951 aaKnown RBP4.56□□□□□ -1.68
TRAV28-201ENST00000557548 CCINQ13939 588 aa4.56□□□□□ -1.68
TRAV28-201ENST00000557548 SAMD5Q5TGI4 173 aa4.56□□□□□ -1.68
TRAV28-201ENST00000557548 FBXL19Q6PCT2 694 aa4.56□□□□□ -1.68
TRAV28-201ENST00000557548 SV2BQ7L1I2 683 aa4.56□□□□□ -1.68
TRAV28-201ENST00000557548 NLRP8Q86W28 1048 aa4.56□□□□□ -1.68
TRAV28-201ENST00000557548 HNRNPLLQ8WVV9 542 aaKnown RBP4.56□□□□□ -1.68
TRAV28-201ENST00000557548 ANAPC16Q96DE5 110 aa4.56□□□□□ -1.68
TRAV28-201ENST00000557548 GAS2L1Q99501 681 aaPredicted RBP4.56□□□□□ -1.68
TRAV28-201ENST00000557548 ZKSCAN3Q9BRR0 538 aa4.56□□□□□ -1.68
TRAV28-201ENST00000557548 TRIM55Q9BYV6 548 aa4.56□□□□□ -1.68
TRAV28-201ENST00000557548 C11orf16Q9NQ32 467 aa4.56□□□□□ -1.68
TRAV28-201ENST00000557548 UBP1Q9NZI7 540 aa4.56□□□□□ -1.68
TRAV28-201ENST00000557548 ZFATQ9P243 1243 aa4.56□□□□□ -1.68
TRAV28-201ENST00000557548 STRIP2Q9ULQ0 834 aa4.56□□□□□ -1.68
TRAV28-201ENST00000557548 SUPT16HQ9Y5B9 1047 aaKnown RBP4.56□□□□□ -1.68
TRAV28-201ENST00000557548 DCDC2BA2VCK2 349 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 TRPA1O75762 1119 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 PF4P02776 101 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 F11P03951 625 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 RLBP1P12271 317 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 GARTP22102 1010 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 KCNQ4P56696 695 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 APOBRQ0VD83 1088 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 SNAP47Q5SQN1 464 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 COL13A1Q5TAT6 717 aaPredicted RBP4.55□□□□□ -1.68
TRAV28-201ENST00000557548 NCAPG2Q86XI2 1143 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 CCNJLQ8IV13 435 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 ANKRD24Q8TF21 1146 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 CPLX3Q8WVH0 158 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 ACDQ96AP0 544 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 GPATCH3Q96I76 525 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 SRPK1Q96SB4 655 aaKnown RBP4.55□□□□□ -1.68
TRAV28-201ENST00000557548 OSMRQ99650 979 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 NT5C1AQ9BXI3 368 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 GSX2Q9BZM3 304 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 KCNQ5Q9NR82 932 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 SIRPGQ9P1W8 387 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 DYRK1BQ9Y463 629 aa4.55□□□□□ -1.68
TRAV28-201ENST00000557548 CCDC85CA6NKD9 419 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 METTL12A8MUP2 240 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 KHNYNO15037 678 aaKnown RBP4.54□□□□□ -1.68
TRAV28-201ENST00000557548 U2SURPO15042 1029 aaKnown RBP4.54□□□□□ -1.68
TRAV28-201ENST00000557548 ATXN7O15265 892 aaPredicted RBP4.54□□□□□ -1.68
TRAV28-201ENST00000557548 EFSO43281 561 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 KLF4O43474 513 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 GREM1O60565 184 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 PSAPP07602 524 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 FAM157BP0CG42 384 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 TFE3P19532 575 aaPredicted RBP4.54□□□□□ -1.68
TRAV28-201ENST00000557548 NFKB1P19838 968 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 HSD3B2P26439 372 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 CRKP46108 304 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 GRIA4P48058 902 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 CAMK2GQ13555 558 aaPredicted RBP4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms