RNA–Protein interactions for RNA: ENST00000540109.5

PTPRD-214, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 6,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-214ENST00000540109 THRAP3Q9Y2W1 955 aaKnown RBP6.96□□□□□ -1.3
PTPRD-214ENST00000540109 GLI3P10071 1580 aa6.96□□□□□ -1.3
PTPRD-214ENST00000540109 PEX19P40855 299 aa6.96□□□□□ -1.3
PTPRD-214ENST00000540109 FILIP1LQ4L180 1135 aa6.96□□□□□ -1.3
PTPRD-214ENST00000540109 COPS6Q7L5N1 327 aa6.96□□□□□ -1.3
PTPRD-214ENST00000540109 ZNF513Q8N8E2 541 aaPredicted RBP6.96□□□□□ -1.3
PTPRD-214ENST00000540109 PRPF38AQ8NAV1 312 aaKnown RBP6.96□□□□□ -1.3
PTPRD-214ENST00000540109 TMOD3Q9NYL9 352 aa6.96□□□□□ -1.3
PTPRD-214ENST00000540109 CLIP2Q9UDT6 1046 aa6.96□□□□□ -1.3
PTPRD-214ENST00000540109 KCPQ6ZWJ8 1503 aa6.96□□□□□ -1.3
PTPRD-214ENST00000540109 RGL2O15211 777 aa6.96□□□□□ -1.3
PTPRD-214ENST00000540109 BAG4O95429 457 aaKnown RBP6.96□□□□□ -1.3
PTPRD-214ENST00000540109 MCM6Q14566 821 aa6.96□□□□□ -1.3
PTPRD-214ENST00000540109 SART3Q15020 963 aaKnown RBP6.96□□□□□ -1.3
PTPRD-214ENST00000540109 KIF6Q6ZMV9 814 aa6.96□□□□□ -1.3
PTPRD-214ENST00000540109 AACSQ86V21 672 aa6.96□□□□□ -1.3
PTPRD-214ENST00000540109 ARFGAP2Q8N6H7 521 aa6.96□□□□□ -1.3
PTPRD-214ENST00000540109 ZNF396Q96N95 335 aaPredicted RBP6.96□□□□□ -1.3
PTPRD-214ENST00000540109 IL15P40933 162 aaPredicted RBP6.95□□□□□ -1.3
PTPRD-214ENST00000540109 TRDNQ13061 729 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 ODF2Q5BJF6 829 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 OLFM4Q6UX06 510 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 CEP57L1Q8IYX8 460 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 CTCFLQ8NI51 663 aaPredicted RBP6.95□□□□□ -1.3
PTPRD-214ENST00000540109 MYD88Q99836 296 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 USH1CQ9Y6N9 552 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 NUP188Q5SRE5 1749 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 FRMD3A2A2Y4 597 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 CCDC183Q5T5S1 534 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 SPATA24Q86W54 205 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 SUCLG2Q96I99 432 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 PCMTD1Q96MG8 357 aaPredicted RBP6.95□□□□□ -1.3
PTPRD-214ENST00000540109 ZSWIM4Q9H7M6 989 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 AFDNP55196 1824 aaKnown RBP6.95□□□□□ -1.3
PTPRD-214ENST00000540109 ATP5JP18859 108 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 SH2D4BQ5SQS7 431 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 LRSAM1Q6UWE0 723 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 GIGYF2Q6Y7W6 1299 aaKnown RBP6.95□□□□□ -1.3
PTPRD-214ENST00000540109 SDF4Q9BRK5 362 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 AKAP2Q9Y2D5 859 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 CICQ96RK0 1608 aaPredicted RBP6.95□□□□□ -1.3
PTPRD-214ENST00000540109 SSBP05455 408 aaKnown RBP eCLIP6.95□□□□□ -1.3
PTPRD-214ENST00000540109 ANKRD18AQ8IVF6 992 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 CCDC150Q8NCX0 1101 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 WDR66Q8TBY9 1149 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 BICC1Q9H694 974 aaKnown RBP6.95□□□□□ -1.3
PTPRD-214ENST00000540109 RAI14Q9P0K7 980 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 H7C1W4 665 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 PHACTR2O75167 634 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 IL1RAPL2Q9NP60 686 aa6.95□□□□□ -1.3
PTPRD-214ENST00000540109 VPS53Q5VIR6 699 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 EP400NLQ6ZTU2 488 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.94□□□□□ -1.3
PTPRD-214ENST00000540109 FAM212AQ96EL1 285 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 PLA2G12BQ9BX93 195 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 ZNHIT6Q9NWK9 470 aaKnown RBP6.94□□□□□ -1.3
PTPRD-214ENST00000540109 DISP2A7MBM2 1401 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 IGKV5-2P06315 115 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 CDHR2Q9BYE9 1310 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 CYP2E1P05181 493 aaPredicted RBP6.94□□□□□ -1.3
PTPRD-214ENST00000540109 HMGB2P26583 209 aaKnown RBP6.94□□□□□ -1.3
PTPRD-214ENST00000540109 CEBPZQ03701 1054 aaKnown RBP6.94□□□□□ -1.3
PTPRD-214ENST00000540109 ZSCAN26Q16670 478 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 DDX12PQ92771 950 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 POLD1P28340 1107 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 CASQ1P31415 396 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 AIMP1Q12904 312 aaKnown RBP6.94□□□□□ -1.3
PTPRD-214ENST00000540109 CHRNA2Q15822 529 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 PROSER3Q2NL68 480 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 LRP10Q7Z4F1 713 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 EHBP1Q8NDI1 1231 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 SCAND2PQ9GZW5 306 aaPredicted RBP6.94□□□□□ -1.3
PTPRD-214ENST00000540109 GDPD2Q9HCC8 539 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 DDX19AQ9NUU7 478 aaKnown RBP6.94□□□□□ -1.3
PTPRD-214ENST00000540109 CYP46A1Q9Y6A2 500 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 JCADQ9P266 1359 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 KRT85P78386 507 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 LSG1Q9H089 658 aaKnown RBP6.94□□□□□ -1.3
PTPRD-214ENST00000540109 PRDM4Q9UKN5 801 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 LIMCH1Q9UPQ0 1083 aa6.94□□□□□ -1.3
PTPRD-214ENST00000540109 U3KPZ7 1027 aaPredicted RBP6.94□□□□□ -1.3
PTPRD-214ENST00000540109 WNK3Q9BYP7 1800 aa6.93□□□□□ -1.3
PTPRD-214ENST00000540109 HCLS1P14317 486 aaPredicted RBP6.93□□□□□ -1.3
PTPRD-214ENST00000540109 SNW1Q13573 536 aaKnown RBP6.93□□□□□ -1.3
PTPRD-214ENST00000540109 TSGA10IPQ3SY00 556 aa6.93□□□□□ -1.3
PTPRD-214ENST00000540109 B4GALNT4Q76KP1 1039 aa6.93□□□□□ -1.3
PTPRD-214ENST00000540109 RSRC1Q96IZ7 334 aaKnown RBP6.93□□□□□ -1.3
PTPRD-214ENST00000540109 YY1AP1Q9H869 796 aa6.93□□□□□ -1.3
PTPRD-214ENST00000540109 SLC24A3Q9HC58 644 aa6.93□□□□□ -1.3
PTPRD-214ENST00000540109 JRKLQ9Y4A0 524 aa6.93□□□□□ -1.3
PTPRD-214ENST00000540109 CCDC196A0A1B0GTZ2 297 aa6.93□□□□□ -1.3
PTPRD-214ENST00000540109 KINO60870 393 aaKnown RBP6.93□□□□□ -1.3
PTPRD-214ENST00000540109 SERPINC1P01008 464 aa6.93□□□□□ -1.3
PTPRD-214ENST00000540109 CWF19L2Q2TBE0 894 aaKnown RBP6.93□□□□□ -1.3
PTPRD-214ENST00000540109 CROCCP2Q86T23 111 aa6.93□□□□□ -1.3
PTPRD-214ENST00000540109 BIN2Q9UBW5 565 aaPredicted RBP6.93□□□□□ -1.3
PTPRD-214ENST00000540109 SHANK3Q9BYB0 1731 aa6.93□□□□□ -1.3
PTPRD-214ENST00000540109 A0A087WZG4 1122 aa6.93□□□□□ -1.3
PTPRD-214ENST00000540109 MRFAP1L1Q96HT8 127 aa6.93□□□□□ -1.3
PTPRD-214ENST00000540109 TMX3Q96JJ7 454 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms