RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 RRAGCQ9HB90 399 aa7.07□□□□□ -1.28
CD44-236ENST00000533222 LRRC4BQ9NT99 713 aa7.07□□□□□ -1.28
CD44-236ENST00000533222 GADD45BO75293 160 aaPredicted RBP7.06□□□□□ -1.28
CD44-236ENST00000533222 PRPF40AO75400 957 aaKnown RBP7.06□□□□□ -1.28
CD44-236ENST00000533222 RGS9O75916 674 aaPredicted RBP7.06□□□□□ -1.28
CD44-236ENST00000533222 AFF1P51825 1210 aaKnown RBP7.06□□□□□ -1.28
CD44-236ENST00000533222 ATP2B2Q01814 1243 aa7.06□□□□□ -1.28
CD44-236ENST00000533222 GLIS3Q8NEA6 775 aa7.06□□□□□ -1.28
CD44-236ENST00000533222 TCF12Q99081 682 aa7.06□□□□□ -1.28
CD44-236ENST00000533222 FRRS1LQ9P0K9 344 aa7.06□□□□□ -1.28
CD44-236ENST00000533222 ZNF16P17020 682 aaPredicted RBP7.05□□□□□ -1.28
CD44-236ENST00000533222 IRX3P78415 501 aaPredicted RBP7.05□□□□□ -1.28
CD44-236ENST00000533222 KIAA0319Q5VV43 1072 aa7.05□□□□□ -1.28
CD44-236ENST00000533222 ALG1LQ6GMV1 187 aa7.05□□□□□ -1.28
CD44-236ENST00000533222 KANK3Q6NY19 840 aa7.05□□□□□ -1.28
CD44-236ENST00000533222 OSBPL7Q9BZF2 842 aa7.05□□□□□ -1.28
CD44-236ENST00000533222 RBSNQ9H1K0 784 aa7.05□□□□□ -1.28
CD44-236ENST00000533222 EHD4Q9H223 541 aa7.05□□□□□ -1.28
CD44-236ENST00000533222 LIN7BQ9HAP6 207 aa7.05□□□□□ -1.28
CD44-236ENST00000533222 PARP2Q9UGN5 583 aa7.05□□□□□ -1.28
CD44-236ENST00000533222 PDE2AO00408 941 aaPredicted RBP7.04□□□□□ -1.28
CD44-236ENST00000533222 NID1P14543 1247 aa7.04□□□□□ -1.28
CD44-236ENST00000533222 BAG6P46379 1132 aa7.04□□□□□ -1.28
CD44-236ENST00000533222 GRIA4P48058 902 aa7.04□□□□□ -1.28
CD44-236ENST00000533222 INSM1Q01101 510 aaPredicted RBP7.04□□□□□ -1.28
CD44-236ENST00000533222 SPRED3Q2MJR0 410 aa7.04□□□□□ -1.28
CD44-236ENST00000533222 NXPE4Q6UWF7 544 aa7.04□□□□□ -1.28
CD44-236ENST00000533222 TMEM102Q8N9M5 508 aaPredicted RBP7.04□□□□□ -1.28
CD44-236ENST00000533222 FBF1Q8TES7 1133 aa7.04□□□□□ -1.28
CD44-236ENST00000533222 NXPE3Q969Y0 559 aa7.04□□□□□ -1.28
CD44-236ENST00000533222 TRIM11Q96F44 468 aa7.04□□□□□ -1.28
CD44-236ENST00000533222 BCO2Q9BYV7 579 aa7.04□□□□□ -1.28
CD44-236ENST00000533222 SUV39H2Q9H5I1 410 aa7.04□□□□□ -1.28
CD44-236ENST00000533222 ABCB6Q9NP58 842 aa7.04□□□□□ -1.28
CD44-236ENST00000533222 SH2B1Q9NRF2 756 aaPredicted RBP7.04□□□□□ -1.28
CD44-236ENST00000533222 ADAMTS8Q9UP79 889 aa7.04□□□□□ -1.28
CD44-236ENST00000533222 LILRB5O75023 590 aa7.03□□□□□ -1.28
CD44-236ENST00000533222 SMNDC1O75940 238 aaKnown RBP eCLIP7.03□□□□□ -1.28
CD44-236ENST00000533222 CDC25BP30305 580 aa7.03□□□□□ -1.28
CD44-236ENST00000533222 TNNT2P45379 298 aaPredicted RBP7.03□□□□□ -1.28
CD44-236ENST00000533222 TXNDC11Q6PKC3 985 aa7.03□□□□□ -1.28
CD44-236ENST00000533222 LINC00114Q6XXX2 140 aa7.03□□□□□ -1.28
CD44-236ENST00000533222 CCNJLQ8IV13 435 aa7.03□□□□□ -1.28
CD44-236ENST00000533222 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.03□□□□□ -1.28
CD44-236ENST00000533222 ASAP3Q8TDY4 903 aa7.03□□□□□ -1.28
CD44-236ENST00000533222 IPO9Q96P70 1041 aaKnown RBP7.03□□□□□ -1.28
CD44-236ENST00000533222 BHLHE41Q9C0J9 482 aaPredicted RBP7.03□□□□□ -1.28
CD44-236ENST00000533222 MUC3BQ9H195 1237 aa7.03□□□□□ -1.28
CD44-236ENST00000533222 TMEM51Q9NW97 253 aa7.03□□□□□ -1.28
CD44-236ENST00000533222 NLRP2Q9NX02 1062 aa7.03□□□□□ -1.28
CD44-236ENST00000533222 CNTNAP5Q8WYK1 1306 aa7.02□□□□□ -1.28
CD44-236ENST00000533222 UNCXA6NJT0 531 aa7.02□□□□□ -1.29
CD44-236ENST00000533222 EPHA1P21709 976 aa7.02□□□□□ -1.29
CD44-236ENST00000533222 GNA15P30679 374 aa7.02□□□□□ -1.29
CD44-236ENST00000533222 ENAMQ9NRM1 1142 aa7.02□□□□□ -1.29
CD44-236ENST00000533222 RBM47A0AV96 593 aaKnown RBP7.01□□□□□ -1.29
CD44-236ENST00000533222 PRPF40BQ6NWY9 871 aaKnown RBP7.01□□□□□ -1.29
CD44-236ENST00000533222 IL22RA1Q8N6P7 574 aa7.01□□□□□ -1.29
CD44-236ENST00000533222 TTC9Q92623 222 aa7.01□□□□□ -1.29
CD44-236ENST00000533222 PRDM6Q9NQX0 595 aa7.01□□□□□ -1.29
CD44-236ENST00000533222 SOX13Q9UN79 622 aa7.01□□□□□ -1.29
CD44-236ENST00000533222 A0A096LPE4 126 aa7□□□□□ -1.29
CD44-236ENST00000533222 A0A1W2PPZ6 126 aa7□□□□□ -1.29
CD44-236ENST00000533222 TTC36A6NLP5 189 aa7□□□□□ -1.29
CD44-236ENST00000533222 FAM229AH3BQW9 127 aa7□□□□□ -1.29
CD44-236ENST00000533222 PTPRAP18433 802 aa7□□□□□ -1.29
CD44-236ENST00000533222 FCGRTP55899 365 aa7□□□□□ -1.29
CD44-236ENST00000533222 DAB2P98082 770 aa7□□□□□ -1.29
CD44-236ENST00000533222 HGSNATQ68CP4 663 aa7□□□□□ -1.29
CD44-236ENST00000533222 VN1R5Q7Z5H4 357 aa7□□□□□ -1.29
CD44-236ENST00000533222 NBPF11Q86T75 865 aa7□□□□□ -1.29
CD44-236ENST00000533222 DMRTC2Q8IXT2 367 aaPredicted RBP7□□□□□ -1.29
CD44-236ENST00000533222 GTPBP4Q9BZE4 634 aaKnown RBP7□□□□□ -1.29
CD44-236ENST00000533222 C12orf49Q9H741 205 aa7□□□□□ -1.29
CD44-236ENST00000533222 GEMIN8Q9NWZ8 242 aaKnown RBP7□□□□□ -1.29
CD44-236ENST00000533222 TMEM238LA0A1B0GVL6 79 aa6.99□□□□□ -1.29
CD44-236ENST00000533222 LETM1O95202 739 aaPredicted RBP6.99□□□□□ -1.29
CD44-236ENST00000533222 CDC27P30260 824 aa6.99□□□□□ -1.29
CD44-236ENST00000533222 ANAPC15P60006 121 aa6.99□□□□□ -1.29
CD44-236ENST00000533222 PSMD2Q13200 908 aa6.99□□□□□ -1.29
CD44-236ENST00000533222 MSL1Q68DK7 614 aa6.99□□□□□ -1.29
CD44-236ENST00000533222 ILDR2Q71H61 639 aa6.99□□□□□ -1.29
CD44-236ENST00000533222 TMC4Q7Z404 712 aa6.99□□□□□ -1.29
CD44-236ENST00000533222 WFDC8Q8IUA0 241 aa6.99□□□□□ -1.29
CD44-236ENST00000533222 GPATCH11Q8N954 259 aa6.99□□□□□ -1.29
CD44-236ENST00000533222 C3orf58Q8NDZ4 430 aa6.99□□□□□ -1.29
CD44-236ENST00000533222 CARD10Q9BWT7 1032 aa6.99□□□□□ -1.29
CD44-236ENST00000533222 ADAM19Q9H013 955 aa6.99□□□□□ -1.29
CD44-236ENST00000533222 SPG7Q9UQ90 795 aa6.99□□□□□ -1.29
CD44-236ENST00000533222 HDAC5Q9UQL6 1122 aa6.99□□□□□ -1.29
CD44-236ENST00000533222 LINC01387J3KSC0 135 aa6.98□□□□□ -1.29
CD44-236ENST00000533222 CTSHP09668 335 aa6.98□□□□□ -1.29
CD44-236ENST00000533222 USP17L7P0C7H9 530 aa6.98□□□□□ -1.29
CD44-236ENST00000533222 XPCQ01831 940 aaPredicted RBP6.98□□□□□ -1.29
CD44-236ENST00000533222 FAAP100Q0VG06 881 aa6.98□□□□□ -1.29
CD44-236ENST00000533222 BSNDQ8WZ55 320 aa6.98□□□□□ -1.29
CD44-236ENST00000533222 PLVAPQ9BX97 442 aa6.98□□□□□ -1.29
CD44-236ENST00000533222 ZNF576Q9H609 170 aa6.98□□□□□ -1.29
CD44-236ENST00000533222 BSDC1Q9NW68 430 aaPredicted RBP6.98□□□□□ -1.29
CD44-236ENST00000533222 CFAP65Q6ZU64 1925 aaKnown RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms