RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 CHMP4CQ96CF2 233 aa22.51■■□□□ 1.19
VPS28-213ENST00000530983 XAGE2Q96GT9 111 aa22.51■■□□□ 1.19
VPS28-213ENST00000530983 TNS2Q63HR2 1409 aa22.5■■□□□ 1.19
VPS28-213ENST00000530983 MYH7P12883 1935 aa22.5■■□□□ 1.19
VPS28-213ENST00000530983 CBX1P83916 185 aa22.5■■□□□ 1.19
VPS28-213ENST00000530983 CCDC57Q2TAC2 916 aa22.5■■□□□ 1.19
VPS28-213ENST00000530983 TTC39AQ5SRH9 613 aa22.5■■□□□ 1.19
VPS28-213ENST00000530983 FMR1NBQ8N0W7 255 aaPredicted RBP22.5■■□□□ 1.19
VPS28-213ENST00000530983 RTEL1Q9NZ71 1219 aa22.5■■□□□ 1.19
VPS28-213ENST00000530983 CTNNA3Q9UI47 895 aa22.5■■□□□ 1.19
VPS28-213ENST00000530983 SHANK3Q9BYB0 1731 aa22.5■■□□□ 1.19
VPS28-213ENST00000530983 SCARF1Q14162 830 aa22.49■■□□□ 1.19
VPS28-213ENST00000530983 NKX1-1Q15270 411 aaPredicted RBP22.49■■□□□ 1.19
VPS28-213ENST00000530983 WASHC4Q2M389 1173 aa22.49■■□□□ 1.19
VPS28-213ENST00000530983 ANO10Q9NW15 660 aa22.49■■□□□ 1.19
VPS28-213ENST00000530983 FGAP02671 866 aa22.49■■□□□ 1.19
VPS28-213ENST00000530983 IMMTQ16891 758 aaKnown RBP22.49■■□□□ 1.19
VPS28-213ENST00000530983 OTUD7BQ6GQQ9 843 aa22.49■■□□□ 1.19
VPS28-213ENST00000530983 LRRC8AQ8IWT6 810 aa22.49■■□□□ 1.19
VPS28-213ENST00000530983 MRPS27Q92552 414 aaKnown RBP22.49■■□□□ 1.19
VPS28-213ENST00000530983 ERCC4Q92889 916 aaPredicted RBP22.49■■□□□ 1.19
VPS28-213ENST00000530983 ZFYP08048 801 aaPredicted RBP22.48■■□□□ 1.19
VPS28-213ENST00000530983 ATP2B3Q16720 1220 aa22.48■■□□□ 1.19
VPS28-213ENST00000530983 LRRFIP1Q32MZ4 808 aaKnown RBP22.48■■□□□ 1.19
VPS28-213ENST00000530983 PPP4R3BQ5MIZ7 849 aa22.48■■□□□ 1.19
VPS28-213ENST00000530983 TOM1L2Q6ZVM7 507 aa22.48■■□□□ 1.19
VPS28-213ENST00000530983 MB21D2Q8IYB1 491 aaPredicted RBP22.48■■□□□ 1.19
VPS28-213ENST00000530983 BECN2A8MW95 431 aa22.48■■□□□ 1.19
VPS28-213ENST00000530983 GORABQ5T7V8 394 aa22.48■■□□□ 1.19
VPS28-213ENST00000530983 ADALQ6DHV7 355 aa22.48■■□□□ 1.19
VPS28-213ENST00000530983 ANKRD7Q92527 254 aa22.48■■□□□ 1.19
VPS28-213ENST00000530983 HPS5Q9UPZ3 1129 aa22.48■■□□□ 1.19
VPS28-213ENST00000530983 AKAP2Q9Y2D5 859 aa22.48■■□□□ 1.19
VPS28-213ENST00000530983 PRC1O43663 620 aa22.47■■□□□ 1.19
VPS28-213ENST00000530983 TCIRG1Q13488 830 aa22.47■■□□□ 1.19
VPS28-213ENST00000530983 ARID5BQ14865 1188 aa22.47■■□□□ 1.19
VPS28-213ENST00000530983 LINC00301Q8NCQ3 95 aa22.47■■□□□ 1.19
VPS28-213ENST00000530983 PUS7LQ9H0K6 701 aaKnown RBP22.47■■□□□ 1.19
VPS28-213ENST00000530983 FBXO3Q9UK99 471 aa22.47■■□□□ 1.19
VPS28-213ENST00000530983 HSP90AB3PQ58FF7 597 aa22.47■■□□□ 1.19
VPS28-213ENST00000530983 KLF18A0A0U1RQI7 1052 aa22.46■■□□□ 1.19
VPS28-213ENST00000530983 A0A1B0GVL5 298 aa22.46■■□□□ 1.19
VPS28-213ENST00000530983 A0A1W2PQ27 194 aa22.46■■□□□ 1.19
VPS28-213ENST00000530983 A0A1W2PQ64 194 aa22.46■■□□□ 1.19
VPS28-213ENST00000530983 A0A1W2PQD8 194 aa22.46■■□□□ 1.19
VPS28-213ENST00000530983 TNNT1P13805 278 aa22.46■■□□□ 1.19
VPS28-213ENST00000530983 ZAP70P43403 619 aa22.46■■□□□ 1.19
VPS28-213ENST00000530983 ANTXR2P58335 489 aa22.46■■□□□ 1.19
VPS28-213ENST00000530983 CEP57L1Q8IYX8 460 aa22.46■■□□□ 1.19
VPS28-213ENST00000530983 CCDC85AQ96PX6 553 aaPredicted RBP22.46■■□□□ 1.19
VPS28-213ENST00000530983 CLIC4Q9Y696 253 aa22.46■■□□□ 1.19
VPS28-213ENST00000530983 NDUFA8P51970 172 aa22.46■■□□□ 1.19
VPS28-213ENST00000530983 PI16Q6UXB8 463 aa22.46■■□□□ 1.19
VPS28-213ENST00000530983 FBXO18Q8NFZ0 1043 aa22.46■■□□□ 1.19
VPS28-213ENST00000530983 APPBP2Q92624 585 aa22.46■■□□□ 1.19
VPS28-213ENST00000530983 C8orf76Q96K31 380 aa22.46■■□□□ 1.19
VPS28-213ENST00000530983 GOLGA8BA8MQT2 603 aa22.45■■□□□ 1.18
VPS28-213ENST00000530983 SMTNL1A8MU46 457 aa22.45■■□□□ 1.18
VPS28-213ENST00000530983 PRDM11Q9NQV5 511 aa22.45■■□□□ 1.18
VPS28-213ENST00000530983 COL5A2P05997 1499 aaPredicted RBP22.45■■□□□ 1.18
VPS28-213ENST00000530983 NEDD4P46934 1319 aa22.45■■□□□ 1.18
VPS28-213ENST00000530983 C4AP0C0L4 1744 aa22.45■■□□□ 1.18
VPS28-213ENST00000530983 C4BP0C0L5 1744 aa22.45■■□□□ 1.18
VPS28-213ENST00000530983 POLR3DP05423 398 aaPredicted RBP22.45■■□□□ 1.18
VPS28-213ENST00000530983 RBM6P78332 1123 aaKnown RBP22.45■■□□□ 1.18
VPS28-213ENST00000530983 AOPEPQ8N6M6 819 aa22.45■■□□□ 1.18
VPS28-213ENST00000530983 POLR3EQ9NVU0 708 aa22.45■■□□□ 1.18
VPS28-213ENST00000530983 AKAP11Q9UKA4 1901 aa22.44■■□□□ 1.18
VPS28-213ENST00000530983 TPD52L1Q16890 204 aaPredicted RBP22.44■■□□□ 1.18
VPS28-213ENST00000530983 FAM89AQ96GI7 184 aa22.44■■□□□ 1.18
VPS28-213ENST00000530983 ORC3Q9UBD5 711 aaPredicted RBP22.44■■□□□ 1.18
VPS28-213ENST00000530983 TOGARAM1Q9Y4F4 1720 aa22.44■■□□□ 1.18
VPS28-213ENST00000530983 ABCC12Q96J65 1359 aa22.44■■□□□ 1.18
VPS28-213ENST00000530983 DHX16O60231 1041 aaKnown RBP22.43■■□□□ 1.18
VPS28-213ENST00000530983 NEMFO60524 1076 aa22.43■■□□□ 1.18
VPS28-213ENST00000530983 TRIM28Q13263 835 aaKnown RBP22.43■■□□□ 1.18
VPS28-213ENST00000530983 STK38Q15208 465 aa22.43■■□□□ 1.18
VPS28-213ENST00000530983 NCOA7Q8NI08 942 aa22.43■■□□□ 1.18
VPS28-213ENST00000530983 SDF4Q9BRK5 362 aa22.43■■□□□ 1.18
VPS28-213ENST00000530983 GJB4Q9NTQ9 266 aa22.43■■□□□ 1.18
VPS28-213ENST00000530983 RIC1Q4ADV7 1423 aa22.43■■□□□ 1.18
VPS28-213ENST00000530983 YEATS4O95619 227 aa22.43■■□□□ 1.18
VPS28-213ENST00000530983 PCCAP05165 728 aaPredicted RBP22.43■■□□□ 1.18
VPS28-213ENST00000530983 RAB11FIP4Q86YS3 637 aa22.43■■□□□ 1.18
VPS28-213ENST00000530983 PDCL2Q8N4E4 241 aa22.43■■□□□ 1.18
VPS28-213ENST00000530983 KCNG4Q8TDN1 519 aa22.43■■□□□ 1.18
VPS28-213ENST00000530983 FBXW7Q969H0 707 aa22.43■■□□□ 1.18
VPS28-213ENST00000530983 ZNF330Q9Y3S2 320 aaPredicted RBP22.43■■□□□ 1.18
VPS28-213ENST00000530983 GPAA1O43292 621 aa22.42■■□□□ 1.18
VPS28-213ENST00000530983 CSF1RP07333 972 aa22.42■■□□□ 1.18
VPS28-213ENST00000530983 IL2RBP14784 551 aa22.42■■□□□ 1.18
VPS28-213ENST00000530983 MYSM1Q5VVJ2 828 aa22.42■■□□□ 1.18
VPS28-213ENST00000530983 PLA2G12BQ9BX93 195 aa22.42■■□□□ 1.18
VPS28-213ENST00000530983 NAT10Q9H0A0 1025 aaKnown RBP22.42■■□□□ 1.18
VPS28-213ENST00000530983 USP27XA6NNY8 438 aa22.42■■□□□ 1.18
VPS28-213ENST00000530983 BRAPQ7Z569 592 aa22.42■■□□□ 1.18
VPS28-213ENST00000530983 KIF28PB7ZC32 967 aa22.41■■□□□ 1.18
VPS28-213ENST00000530983 SPTLC2O15270 562 aa22.41■■□□□ 1.18
VPS28-213ENST00000530983 NCBP1Q09161 790 aaKnown RBP22.41■■□□□ 1.18
VPS28-213ENST00000530983 IFIT5Q13325 482 aaKnown RBP22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 435.3 ms