RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CCDC102BQ68D86 513 aa25.57■■□□□ 1.68
VPS28-212ENST00000530836 CWC27Q6UX04 472 aaKnown RBP25.57■■□□□ 1.68
VPS28-212ENST00000530836 ANO2Q9NQ90 1003 aa25.57■■□□□ 1.68
VPS28-212ENST00000530836 AOC3Q16853 763 aa25.56■■□□□ 1.68
VPS28-212ENST00000530836 LARGE2Q8N3Y3 721 aa25.56■■□□□ 1.68
VPS28-212ENST00000530836 SNRKQ9NRH2 765 aa25.56■■□□□ 1.68
VPS28-212ENST00000530836 DUOX1Q9NRD9 1551 aa25.56■■□□□ 1.68
VPS28-212ENST00000530836 ZNF804BA4D1E1 1349 aa25.56■■□□□ 1.68
VPS28-212ENST00000530836 GOLIM4O00461 696 aa25.55■■□□□ 1.68
VPS28-212ENST00000530836 ZC3H12CQ9C0D7 883 aaKnown RBP25.55■■□□□ 1.68
VPS28-212ENST00000530836 BECN1Q14457 450 aa25.55■■□□□ 1.68
VPS28-212ENST00000530836 TTF1Q15361 905 aaPredicted RBP25.55■■□□□ 1.68
VPS28-212ENST00000530836 GPR101Q96P66 508 aaPredicted RBP25.55■■□□□ 1.68
VPS28-212ENST00000530836 LTBP1Q14766 1721 aa25.54■■□□□ 1.68
VPS28-212ENST00000530836 KCNJ4P48050 445 aa25.54■■□□□ 1.68
VPS28-212ENST00000530836 JDP2Q8WYK2 163 aa25.54■■□□□ 1.68
VPS28-212ENST00000530836 SNAP23O00161 211 aa25.53■■□□□ 1.68
VPS28-212ENST00000530836 RIMBP2O15034 1052 aa25.53■■□□□ 1.68
VPS28-212ENST00000530836 EDC3Q96F86 508 aaKnown RBP25.53■■□□□ 1.68
VPS28-212ENST00000530836 ZFYP08048 801 aaPredicted RBP25.52■■□□□ 1.68
VPS28-212ENST00000530836 NMIQ13287 307 aaPredicted RBP25.52■■□□□ 1.68
VPS28-212ENST00000530836 DAXXQ9UER7 740 aaPredicted RBP25.52■■□□□ 1.68
VPS28-212ENST00000530836 ZC3H4Q9UPT8 1303 aaKnown RBP25.52■■□□□ 1.68
VPS28-212ENST00000530836 SBF1O95248 1867 aa25.52■■□□□ 1.68
VPS28-212ENST00000530836 PHKA1P46020 1223 aa25.52■■□□□ 1.68
VPS28-212ENST00000530836 CAVIN4Q5BKX8 364 aa25.52■■□□□ 1.68
VPS28-212ENST00000530836 IL27Q8NEV9 243 aa25.52■■□□□ 1.68
VPS28-212ENST00000530836 GNL3LQ9NVN8 582 aaKnown RBP25.52■■□□□ 1.68
VPS28-212ENST00000530836 MCAMP43121 646 aa25.51■■□□□ 1.67
VPS28-212ENST00000530836 ANAPC15P60006 121 aa25.51■■□□□ 1.67
VPS28-212ENST00000530836 NIM1KQ8IY84 436 aa25.51■■□□□ 1.67
VPS28-212ENST00000530836 NDUFB9Q9Y6M9 179 aa25.51■■□□□ 1.67
VPS28-212ENST00000530836 A0A1B0GUL6 1792 aa25.5■■□□□ 1.67
VPS28-212ENST00000530836 MED23Q9ULK4 1368 aa25.5■■□□□ 1.67
VPS28-212ENST00000530836 FZD9O00144 591 aa25.5■■□□□ 1.67
VPS28-212ENST00000530836 ZAP70P43403 619 aa25.5■■□□□ 1.67
VPS28-212ENST00000530836 C15orf52Q6ZUT6 534 aaKnown RBP25.5■■□□□ 1.67
VPS28-212ENST00000530836 ZBTB22O15209 634 aa25.49■■□□□ 1.67
VPS28-212ENST00000530836 SCARF1Q14162 830 aa25.49■■□□□ 1.67
VPS28-212ENST00000530836 ZSCAN25Q6NSZ9 544 aa25.49■■□□□ 1.67
VPS28-212ENST00000530836 TXNRD3Q86VQ6 643 aa25.49■■□□□ 1.67
VPS28-212ENST00000530836 FAM227BQ96M60 508 aa25.49■■□□□ 1.67
VPS28-212ENST00000530836 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.49■■□□□ 1.672e-7■■■■□ 23.7
VPS28-212ENST00000530836 LSG1Q9H089 658 aaKnown RBP25.49■■□□□ 1.67
VPS28-212ENST00000530836 IL25Q9H293 177 aa25.49■■□□□ 1.67
VPS28-212ENST00000530836 HELLSQ9NRZ9 838 aa25.49■■□□□ 1.67
VPS28-212ENST00000530836 KLRK1P26718 216 aa25.48■■□□□ 1.67
VPS28-212ENST00000530836 RABEP1Q15276 862 aa25.48■■□□□ 1.67
VPS28-212ENST00000530836 KIF2CQ99661 725 aa25.48■■□□□ 1.67
VPS28-212ENST00000530836 ZNRF3Q9ULT6 936 aa25.48■■□□□ 1.67
VPS28-212ENST00000530836 IRS2Q9Y4H2 1338 aa25.48■■□□□ 1.67
VPS28-212ENST00000530836 CHD4Q14839 1912 aa25.48■■□□□ 1.67
VPS28-212ENST00000530836 COL4A5P29400 1685 aa25.48■■□□□ 1.67
VPS28-212ENST00000530836 RNF113AO15541 343 aaKnown RBP25.48■■□□□ 1.67
VPS28-212ENST00000530836 YY1P25490 414 aa25.48■■□□□ 1.67
VPS28-212ENST00000530836 DOK7Q18PE1 504 aa25.48■■□□□ 1.67
VPS28-212ENST00000530836 MCMDC2Q4G0Z9 681 aa25.48■■□□□ 1.67
VPS28-212ENST00000530836 SPATA5Q8NB90 893 aa25.48■■□□□ 1.67
VPS28-212ENST00000530836 IL17RAQ96F46 866 aa25.48■■□□□ 1.67
VPS28-212ENST00000530836 A0A0D9SFI3 127 aa25.47■■□□□ 1.67
VPS28-212ENST00000530836 DBNDD1Q9H9R9 158 aa25.47■■□□□ 1.67
VPS28-212ENST00000530836 G3V3G9 751 aa25.46■■□□□ 1.67
VPS28-212ENST00000530836 SEMA3EO15041 775 aa25.46■■□□□ 1.67
VPS28-212ENST00000530836 HSPA4P34932 840 aa25.46■■□□□ 1.67
VPS28-212ENST00000530836 BCAMP50895 628 aa25.46■■□□□ 1.67
VPS28-212ENST00000530836 DCAF8Q5TAQ9 597 aa25.46■■□□□ 1.67
VPS28-212ENST00000530836 ANTXR1Q9H6X2 564 aa25.46■■□□□ 1.67
VPS28-212ENST00000530836 HMG20BQ9P0W2 317 aa25.46■■□□□ 1.67
VPS28-212ENST00000530836 AKAP11Q9UKA4 1901 aa25.45■■□□□ 1.67
VPS28-212ENST00000530836 ZMYM1Q5SVZ6 1142 aa25.45■■□□□ 1.67
VPS28-212ENST00000530836 VPS37DQ86XT2 251 aa25.45■■□□□ 1.67
VPS28-212ENST00000530836 SNX21Q969T3 373 aa25.45■■□□□ 1.67
VPS28-212ENST00000530836 CCDC171Q6TFL3 1326 aa25.45■■□□□ 1.66
VPS28-212ENST00000530836 ECE2O60344 883 aa25.45■■□□□ 1.66
VPS28-212ENST00000530836 CYP2E1P05181 493 aaPredicted RBP25.45■■□□□ 1.66
VPS28-212ENST00000530836 RASGRF1Q13972 1273 aa25.45■■□□□ 1.66
VPS28-212ENST00000530836 COA1Q9GZY4 146 aa25.45■■□□□ 1.66
VPS28-212ENST00000530836 YDJCA8MPS7 323 aa25.44■■□□□ 1.66
VPS28-212ENST00000530836 EIF6P56537 245 aaKnown RBP25.44■■□□□ 1.66
VPS28-212ENST00000530836 PODNQ7Z5L7 613 aa25.44■■□□□ 1.66
VPS28-212ENST00000530836 CCDC88AQ3V6T2 1871 aa25.43■■□□□ 1.66
VPS28-212ENST00000530836 DPY19L2Q6NUT2 758 aa25.43■■□□□ 1.66
VPS28-212ENST00000530836 FBXO33Q7Z6M2 555 aa25.43■■□□□ 1.66
VPS28-212ENST00000530836 MAP4K1Q92918 833 aa25.43■■□□□ 1.66
VPS28-212ENST00000530836 FAM84BQ96KN1 310 aaPredicted RBP25.43■■□□□ 1.66
VPS28-212ENST00000530836 GLTPD2A6NH11 291 aa25.42■■□□□ 1.66
VPS28-212ENST00000530836 CXCL9Q07325 125 aa25.42■■□□□ 1.66
VPS28-212ENST00000530836 PI16Q6UXB8 463 aa25.42■■□□□ 1.66
VPS28-212ENST00000530836 DENND2AQ9ULE3 1009 aa25.42■■□□□ 1.66
VPS28-212ENST00000530836 PDS5AQ29RF7 1337 aaKnown RBP25.42■■□□□ 1.66
VPS28-212ENST00000530836 ZNF541Q9H0D2 1346 aa25.42■■□□□ 1.66
VPS28-212ENST00000530836 DICER1Q9UPY3 1922 aaKnown RBP25.42■■□□□ 1.66
VPS28-212ENST00000530836 ZNF804AQ7Z570 1209 aa25.41■■□□□ 1.66
VPS28-212ENST00000530836 CD209Q9NNX6 404 aa25.41■■□□□ 1.66
VPS28-212ENST00000530836 HIBADHP31937 336 aaKnown RBP25.41■■□□□ 1.66
VPS28-212ENST00000530836 GYG1P46976 350 aa25.41■■□□□ 1.66
VPS28-212ENST00000530836 HSCBQ8IWL3 235 aa25.41■■□□□ 1.66
VPS28-212ENST00000530836 APPBP2Q92624 585 aa25.41■■□□□ 1.66
VPS28-212ENST00000530836 KCNQ5Q9NR82 932 aa25.41■■□□□ 1.66
VPS28-212ENST00000530836 RAD17O75943 681 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms