RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 MCAMP43121 646 aa16.78■□□□□ 0.28
CD44-224ENST00000526669 VPS33BQ9H267 617 aa16.78■□□□□ 0.28
CD44-224ENST00000526669 GNL3LQ9NVN8 582 aaKnown RBP16.78■□□□□ 0.28
CD44-224ENST00000526669 RAD17O75943 681 aa16.77■□□□□ 0.28
CD44-224ENST00000526669 IL1R1P14778 569 aa16.77■□□□□ 0.28
CD44-224ENST00000526669 RGS3P49796 1198 aa16.77■□□□□ 0.28
CD44-224ENST00000526669 GTF2IP78347 998 aa16.77■□□□□ 0.28
CD44-224ENST00000526669 RASGRF1Q13972 1273 aa16.77■□□□□ 0.28
CD44-224ENST00000526669 PLEKHM2Q8IWE5 1019 aa16.77■□□□□ 0.28
CD44-224ENST00000526669 TDRD7Q8NHU6 1098 aaKnown RBP16.77■□□□□ 0.28
CD44-224ENST00000526669 GPATCH3Q96I76 525 aa16.77■□□□□ 0.28
CD44-224ENST00000526669 BOLA2Q9H3K6 86 aa16.77■□□□□ 0.28
CD44-224ENST00000526669 ZNF541Q9H0D2 1346 aa16.76■□□□□ 0.27
CD44-224ENST00000526669 MAP4K4O95819 1239 aaPredicted RBP16.76■□□□□ 0.27
CD44-224ENST00000526669 UQCRFS1P1P0C7P4 283 aa16.76■□□□□ 0.27
CD44-224ENST00000526669 PDE1AP54750 535 aa16.76■□□□□ 0.27
CD44-224ENST00000526669 DNAJC2Q99543 621 aaKnown RBP16.76■□□□□ 0.27
CD44-224ENST00000526669 MXD3Q9BW11 206 aa16.76■□□□□ 0.27
CD44-224ENST00000526669 ECHDC1Q9NTX5 307 aa16.76■□□□□ 0.27
CD44-224ENST00000526669 ZNRF3Q9ULT6 936 aa16.76■□□□□ 0.27
CD44-224ENST00000526669 POLR2AP24928 1970 aaKnown RBP16.75■□□□□ 0.27
CD44-224ENST00000526669 PODNQ7Z5L7 613 aa16.75■□□□□ 0.27
CD44-224ENST00000526669 HMG20BQ9P0W2 317 aa16.75■□□□□ 0.27
CD44-224ENST00000526669 DENND2AQ9ULE3 1009 aa16.75■□□□□ 0.27
CD44-224ENST00000526669 ECM29Q5VYK3 1845 aa16.75■□□□□ 0.27
CD44-224ENST00000526669 TTC41PQ6P2S7 1318 aa16.74■□□□□ 0.27
CD44-224ENST00000526669 CDK5RAP2Q96SN8 1893 aa16.74■□□□□ 0.27
CD44-224ENST00000526669 PSMD14O00487 310 aa16.74■□□□□ 0.27
CD44-224ENST00000526669 ATP5JP18859 108 aa16.74■□□□□ 0.27
CD44-224ENST00000526669 ZAP70P43403 619 aa16.74■□□□□ 0.27
CD44-224ENST00000526669 EIF6P56537 245 aaKnown RBP16.74■□□□□ 0.27
CD44-224ENST00000526669 CXCL9Q07325 125 aa16.74■□□□□ 0.27
CD44-224ENST00000526669 TTLL5Q6EMB2 1281 aa16.74■□□□□ 0.27
CD44-224ENST00000526669 PI4K2BQ8TCG2 481 aa16.74■□□□□ 0.27
CD44-224ENST00000526669 EDC3Q96F86 508 aaKnown RBP16.74■□□□□ 0.27
CD44-224ENST00000526669 GJA3Q9Y6H8 435 aa16.74■□□□□ 0.27
CD44-224ENST00000526669 USP17L3A6NCW0 530 aa16.73■□□□□ 0.27
CD44-224ENST00000526669 USP17L4A6NCW7 530 aa16.73■□□□□ 0.27
CD44-224ENST00000526669 FZD9O00144 591 aa16.73■□□□□ 0.27
CD44-224ENST00000526669 CIAPIN1Q6FI81 312 aa16.73■□□□□ 0.27
CD44-224ENST00000526669 USP17L1Q7RTZ2 530 aa16.73■□□□□ 0.27
CD44-224ENST00000526669 SPATA5Q8NB90 893 aa16.73■□□□□ 0.27
CD44-224ENST00000526669 STAP2Q9UGK3 403 aa16.73■□□□□ 0.27
CD44-224ENST00000526669 SEMA3EO15041 775 aa16.72■□□□□ 0.27
CD44-224ENST00000526669 ERC2O15083 957 aa16.72■□□□□ 0.27
CD44-224ENST00000526669 TBC1D9Q6ZT07 1266 aa16.72■□□□□ 0.27
CD44-224ENST00000526669 ZNF512BQ96KM6 892 aaPredicted RBP16.72■□□□□ 0.27
CD44-224ENST00000526669 ANTXR1Q9H6X2 564 aa16.72■□□□□ 0.27
CD44-224ENST00000526669 FAM205AQ6ZU69 1335 aa16.71■□□□□ 0.27
CD44-224ENST00000526669 SCN4AP35499 1836 aa16.71■□□□□ 0.27
CD44-224ENST00000526669 GOLIM4O00461 696 aa16.71■□□□□ 0.27
CD44-224ENST00000526669 GLRX3O76003 335 aaKnown RBP16.71■□□□□ 0.27
CD44-224ENST00000526669 CYP2E1P05181 493 aaPredicted RBP16.71■□□□□ 0.27
CD44-224ENST00000526669 GRIK5Q16478 980 aa16.71■□□□□ 0.27
CD44-224ENST00000526669 MFSD14BQ5SR56 506 aa16.71■□□□□ 0.27
CD44-224ENST00000526669 DACT2Q5SW24 774 aa16.71■□□□□ 0.27
CD44-224ENST00000526669 CERS5Q8N5B7 392 aa16.71■□□□□ 0.27
CD44-224ENST00000526669 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.71■□□□□ 0.27
CD44-224ENST00000526669 HAUS7Q99871 368 aa16.71■□□□□ 0.27
CD44-224ENST00000526669 ABCF2Q9UG63 623 aa16.71■□□□□ 0.27
CD44-224ENST00000526669 ZBTB12Q9Y330 459 aaPredicted RBP16.71■□□□□ 0.27
CD44-224ENST00000526669 AOX1Q06278 1338 aa16.7■□□□□ 0.26
CD44-224ENST00000526669 F8W031 263 aaPredicted RBP16.7■□□□□ 0.26
CD44-224ENST00000526669 STRIP1Q5VSL9 837 aa16.7■□□□□ 0.26
CD44-224ENST00000526669 WDR66Q8TBY9 1149 aa16.7■□□□□ 0.26
CD44-224ENST00000526669 PIH1D3Q9NQM4 214 aaKnown RBP16.7■□□□□ 0.26
CD44-224ENST00000526669 PAG1Q9NWQ8 432 aa16.7■□□□□ 0.26
CD44-224ENST00000526669 VIL1P09327 827 aaKnown RBP16.69■□□□□ 0.26
CD44-224ENST00000526669 TNIP1Q15025 636 aa16.69■□□□□ 0.26
CD44-224ENST00000526669 RSBN1LQ6PCB5 846 aaPredicted RBP16.69■□□□□ 0.26
CD44-224ENST00000526669 OSBPL3Q9H4L5 887 aa16.69■□□□□ 0.26
CD44-224ENST00000526669 PDS5AQ29RF7 1337 aaKnown RBP16.69■□□□□ 0.26
CD44-224ENST00000526669 WDR90Q96KV7 1748 aa16.68■□□□□ 0.26
CD44-224ENST00000526669 TRIM6-TRIM34B2RNG4 842 aa16.68■□□□□ 0.26
CD44-224ENST00000526669 DDNO94850 711 aaPredicted RBP16.68■□□□□ 0.26
CD44-224ENST00000526669 GSPT1P15170 499 aaKnown RBP16.68■□□□□ 0.26
CD44-224ENST00000526669 PRDX5P30044 214 aa16.68■□□□□ 0.26
CD44-224ENST00000526669 TTC22Q5TAA0 569 aa16.68■□□□□ 0.26
CD44-224ENST00000526669 TBC1D22AQ8WUA7 517 aa16.68■□□□□ 0.26
CD44-224ENST00000526669 SHTN1A0MZ66 631 aa16.67■□□□□ 0.26
CD44-224ENST00000526669 GMPSP49915 693 aaPredicted RBP16.67■□□□□ 0.26
CD44-224ENST00000526669 KIAA0825Q8IV33 1275 aa16.67■□□□□ 0.26
CD44-224ENST00000526669 RILPL2Q969X0 211 aa16.67■□□□□ 0.26
CD44-224ENST00000526669 RAI14Q9P0K7 980 aa16.67■□□□□ 0.26
CD44-224ENST00000526669 FOCADQ5VW36 1801 aa16.67■□□□□ 0.26
CD44-224ENST00000526669 BAZ2AQ9UIF9 1905 aaKnown RBP16.66■□□□□ 0.26
CD44-224ENST00000526669 IDH1O75874 414 aaKnown RBP16.66■□□□□ 0.26
CD44-224ENST00000526669 LDHBP07195 334 aaKnown RBP16.66■□□□□ 0.26
CD44-224ENST00000526669 SCNN1DP51172 638 aa16.66■□□□□ 0.26
CD44-224ENST00000526669 ERICH6Q7L0X2 663 aa16.66■□□□□ 0.26
CD44-224ENST00000526669 LRP2BPQ9P2M1 347 aa16.66■□□□□ 0.26
CD44-224ENST00000526669 SALL1Q9NSC2 1324 aa16.66■□□□□ 0.26
CD44-224ENST00000526669 ZC3H4Q9UPT8 1303 aaKnown RBP16.66■□□□□ 0.26
CD44-224ENST00000526669 MYH1P12882 1939 aa16.65■□□□□ 0.26
CD44-224ENST00000526669 ZBTB22O15209 634 aa16.65■□□□□ 0.26
CD44-224ENST00000526669 GPC2Q8N158 579 aa16.65■□□□□ 0.26
CD44-224ENST00000526669 ZGPATQ8N5A5 531 aaKnown RBP16.65■□□□□ 0.26
CD44-224ENST00000526669 GMLQ99445 158 aa16.65■□□□□ 0.26
CD44-224ENST00000526669 TTF2Q9UNY4 1162 aaKnown RBP16.65■□□□□ 0.26
CD44-224ENST00000526669 CHGBP05060 677 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms