RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 ASIC1P78348 528 aa15.04■□□□□ -0
TCOF1-214ENST00000515035 SARNPP82979 210 aaKnown RBP15.04■□□□□ -0
TCOF1-214ENST00000515035 UBXN1Q04323 297 aa15.04■□□□□ -0
TCOF1-214ENST00000515035 CNGA4Q8IV77 575 aa15.04■□□□□ -0
TCOF1-214ENST00000515035 C17orf53Q8N3J3 647 aaPredicted RBP15.04■□□□□ -0
TCOF1-214ENST00000515035 MAP3K9P80192 1104 aa15.03■□□□□ -0
TCOF1-214ENST00000515035 PPIP5K1Q6PFW1 1433 aa15.03■□□□□ -0
TCOF1-214ENST00000515035 SNRPA1P09661 255 aaKnown RBP15.03■□□□□ -0
TCOF1-214ENST00000515035 APBB1IPQ7Z5R6 666 aaPredicted RBP15.03■□□□□ -0
TCOF1-214ENST00000515035 ZCRB1Q8TBF4 217 aaKnown RBP15.03■□□□□ -0
TCOF1-214ENST00000515035 FERMT1Q9BQL6 677 aa15.03■□□□□ -0
TCOF1-214ENST00000515035 KCNK9Q9NPC2 374 aa15.03■□□□□ -0
TCOF1-214ENST00000515035 PIK3R4Q99570 1358 aa15.03■□□□□ -0
TCOF1-214ENST00000515035 WDHD1O75717 1129 aaPredicted RBP15.03■□□□□ -0
TCOF1-214ENST00000515035 CCDC174Q6PII3 467 aa15.03■□□□□ -0
TCOF1-214ENST00000515035 TRMT1LQ7Z2T5 733 aaKnown RBP15.03■□□□□ -0
TCOF1-214ENST00000515035 RALGAPBQ86X10 1494 aa15.03■□□□□ -0
TCOF1-214ENST00000515035 MYL5Q02045 173 aa15.03■□□□□ -0
TCOF1-214ENST00000515035 CCDC122Q5T0U0 273 aa15.03■□□□□ -0
TCOF1-214ENST00000515035 CARD6Q9BX69 1037 aa15.03■□□□□ -0
TCOF1-214ENST00000515035 MTRF1LQ9UGC7 380 aaKnown RBP15.03■□□□□ -0
TCOF1-214ENST00000515035 TRIM75PA6NK02 468 aa15.02□□□□□ -0.01
TCOF1-214ENST00000515035 HPDP32754 393 aaPredicted RBP15.02□□□□□ -0.01
TCOF1-214ENST00000515035 PDE4BQ07343 736 aa15.02□□□□□ -0.01
TCOF1-214ENST00000515035 UBE3BQ7Z3V4 1068 aa15.02□□□□□ -0.01
TCOF1-214ENST00000515035 FAM83GA6ND36 823 aa15.02□□□□□ -0.01
TCOF1-214ENST00000515035 PCK1P35558 622 aa15.02□□□□□ -0.01
TCOF1-214ENST00000515035 PTPRKQ15262 1439 aa15.02□□□□□ -0.01
TCOF1-214ENST00000515035 RTN1Q16799 776 aa15.02□□□□□ -0.01
TCOF1-214ENST00000515035 IFT74Q96LB3 600 aa15.02□□□□□ -0.01
TCOF1-214ENST00000515035 ZFYP08048 801 aaPredicted RBP15.01□□□□□ -0.01
TCOF1-214ENST00000515035 CHMP4BP1P59074 171 aa15.01□□□□□ -0.01
TCOF1-214ENST00000515035 INTS8Q75QN2 995 aaKnown RBP15.01□□□□□ -0.01
TCOF1-214ENST00000515035 SLF2Q8IX21 1173 aa15.01□□□□□ -0.01
TCOF1-214ENST00000515035 CDC5LQ99459 802 aaKnown RBP15.01□□□□□ -0.01
TCOF1-214ENST00000515035 DDX23Q9BUQ8 820 aaKnown RBP15.01□□□□□ -0.01
TCOF1-214ENST00000515035 ZBTB3Q9H5J0 574 aa15.01□□□□□ -0.01
TCOF1-214ENST00000515035 TBX22Q9Y458 520 aa15.01□□□□□ -0.01
TCOF1-214ENST00000515035 AKR1B15C9JRZ8 316 aaPredicted RBP15.01□□□□□ -0.01
TCOF1-214ENST00000515035 FAM160A1Q05DH4 1040 aa15.01□□□□□ -0.01
TCOF1-214ENST00000515035 LDHAL6AQ6ZMR3 332 aa15.01□□□□□ -0.01
TCOF1-214ENST00000515035 RGS22Q8NE09 1264 aa15.01□□□□□ -0.01
TCOF1-214ENST00000515035 VIMP08670 466 aaKnown RBP15.01□□□□□ -0.01
TCOF1-214ENST00000515035 HSPA2P54652 639 aa15.01□□□□□ -0.01
TCOF1-214ENST00000515035 CCDC25Q86WR0 208 aa15.01□□□□□ -0.01
TCOF1-214ENST00000515035 UBLCP1Q8WVY7 318 aaPredicted RBP15.01□□□□□ -0.01
TCOF1-214ENST00000515035 GOLGA6CA6NDK9 693 aa15.01□□□□□ -0.01
TCOF1-214ENST00000515035 GOLGA6DP0CG33 693 aa15.01□□□□□ -0.01
TCOF1-214ENST00000515035 STMN2Q93045 179 aa15.01□□□□□ -0.01
TCOF1-214ENST00000515035 GOLGA6AQ9NYA3 693 aa15.01□□□□□ -0.01
TCOF1-214ENST00000515035 FEZ2Q9UHY8 353 aaPredicted RBP15.01□□□□□ -0.01
TCOF1-214ENST00000515035 KIF21AQ7Z4S6 1674 aa15.01□□□□□ -0.01
TCOF1-214ENST00000515035 GSTA5Q7RTV2 222 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 LMNTD2Q8IXW0 634 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 CCDC63Q8NA47 563 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 EHMT1Q9H9B1 1298 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 NOL3O60936 208 aaKnown RBP15□□□□□ -0.01
TCOF1-214ENST00000515035 RFC4P35249 363 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 MCMDC2Q4G0Z9 681 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 SEC62Q99442 399 aaKnown RBP15□□□□□ -0.01
TCOF1-214ENST00000515035 SHANK2Q9UPX8 1470 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 ZNF445P59923 1031 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 TMTC2Q8N394 836 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 NEK11Q8NG66 645 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 CWC25Q9NXE8 425 aaPredicted RBP15□□□□□ -0.01
TCOF1-214ENST00000515035 ATP11AP98196 1134 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 NAPGQ99747 312 aaPredicted RBP15□□□□□ -0.01
TCOF1-214ENST00000515035 NCKAP5LQ9HCH0 1330 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 A6NNZ2 444 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 GPTP24298 496 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 TUBB8Q3ZCM7 444 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 MIPOL1Q8TD10 442 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 LRRC59Q96AG4 307 aaKnown RBP15□□□□□ -0.01
TCOF1-214ENST00000515035 PPP1R12CQ9BZL4 782 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 KRT23Q9C075 422 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 ANAPC4Q9UJX5 808 aa15□□□□□ -0.01
TCOF1-214ENST00000515035 ALDH3A1P30838 453 aa14.99□□□□□ -0.01
TCOF1-214ENST00000515035 TRIM7Q9C029 511 aa14.99□□□□□ -0.01
TCOF1-214ENST00000515035 BUB1BO60566 1050 aaPredicted RBP14.99□□□□□ -0.01
TCOF1-214ENST00000515035 CALCOCO2Q13137 446 aa14.99□□□□□ -0.01
TCOF1-214ENST00000515035 RABEP2Q9H5N1 569 aa14.99□□□□□ -0.01
TCOF1-214ENST00000515035 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.99□□□□□ -0.01
TCOF1-214ENST00000515035 PTPDC1A2A3K4 754 aa14.99□□□□□ -0.01
TCOF1-214ENST00000515035 ATP5J2-PTCD1G3V325 749 aa14.99□□□□□ -0.01
TCOF1-214ENST00000515035 ERMNQ8TAM6 284 aa14.99□□□□□ -0.01
TCOF1-214ENST00000515035 NKIRAS1Q9NYS0 192 aa14.99□□□□□ -0.01
TCOF1-214ENST00000515035 OAS2P29728 719 aaKnown RBP14.98□□□□□ -0.01
TCOF1-214ENST00000515035 PLCB3Q01970 1234 aa14.98□□□□□ -0.01
TCOF1-214ENST00000515035 TUBB2AQ13885 445 aa14.98□□□□□ -0.01
TCOF1-214ENST00000515035 DDB1Q16531 1140 aa14.98□□□□□ -0.01
TCOF1-214ENST00000515035 C8orf37Q96NL8 207 aa14.98□□□□□ -0.01
TCOF1-214ENST00000515035 PSMD1Q99460 953 aa14.98□□□□□ -0.01
TCOF1-214ENST00000515035 TUBB2BQ9BVA1 445 aa14.98□□□□□ -0.01
TCOF1-214ENST00000515035 USP26Q9BXU7 913 aa14.98□□□□□ -0.01
TCOF1-214ENST00000515035 TCOF1Q13428 1488 aaKnown RBP14.98□□□□□ -0.01
TCOF1-214ENST00000515035 BICDL2A1A5D9 508 aa14.98□□□□□ -0.01
TCOF1-214ENST00000515035 ARHGAP25P42331 645 aa14.98□□□□□ -0.01
TCOF1-214ENST00000515035 ATP10AO60312 1499 aa14.98□□□□□ -0.01
TCOF1-214ENST00000515035 ATP8B2P98198 1209 aa14.98□□□□□ -0.01
TCOF1-214ENST00000515035 NMIQ13287 307 aaPredicted RBP14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms