RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 SMARCC1Q92922 1105 aaPredicted RBP18.72■□□□□ 0.59
CCDC88B-209ENST00000494080 JAG2Q9Y219 1238 aa18.72■□□□□ 0.59
CCDC88B-209ENST00000494080 GTF2A1P52655 376 aaPredicted RBP18.72■□□□□ 0.59
CCDC88B-209ENST00000494080 PAXIP1Q6ZW49 1069 aaPredicted RBP18.72■□□□□ 0.59
CCDC88B-209ENST00000494080 UNC5CLQ8IV45 518 aa18.72■□□□□ 0.59
CCDC88B-209ENST00000494080 MAGEB6Q8N7X4 407 aa18.72■□□□□ 0.59
CCDC88B-209ENST00000494080 STX8Q9UNK0 236 aa18.72■□□□□ 0.59
CCDC88B-209ENST00000494080 AOX1Q06278 1338 aa18.72■□□□□ 0.59
CCDC88B-209ENST00000494080 LRMPQ12912 555 aa18.72■□□□□ 0.59
CCDC88B-209ENST00000494080 CCDC12Q8WUD4 166 aaPredicted RBP18.71■□□□□ 0.59
CCDC88B-209ENST00000494080 CENPHQ9H3R5 247 aa18.71■□□□□ 0.59
CCDC88B-209ENST00000494080 CDR1P51861 262 aa18.71■□□□□ 0.59
CCDC88B-209ENST00000494080 PYCARDQ9ULZ3 195 aa18.71■□□□□ 0.59
CCDC88B-209ENST00000494080 ABCA6Q8N139 1617 aa18.71■□□□□ 0.59
CCDC88B-209ENST00000494080 CDK12Q9NYV4 1490 aaPredicted RBP18.71■□□□□ 0.59
CCDC88B-209ENST00000494080 PTPDC1A2A3K4 754 aa18.71■□□□□ 0.59
CCDC88B-209ENST00000494080 NAA16Q6N069 864 aaPredicted RBP18.71■□□□□ 0.59
CCDC88B-209ENST00000494080 CRACR2BQ8N4Y2 399 aaPredicted RBP18.71■□□□□ 0.59
CCDC88B-209ENST00000494080 IPO4Q8TEX9 1081 aaKnown RBP18.71■□□□□ 0.59
CCDC88B-209ENST00000494080 XAGE2Q96GT9 111 aa18.71■□□□□ 0.59
CCDC88B-209ENST00000494080 CBX8Q9HC52 389 aa18.71■□□□□ 0.59
CCDC88B-209ENST00000494080 VAT1LQ9HCJ6 419 aa18.71■□□□□ 0.59
CCDC88B-209ENST00000494080 MARCKSP29966 332 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-209ENST00000494080 IBSPP21815 317 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-209ENST00000494080 HSPA4P34932 840 aa18.7■□□□□ 0.58
CCDC88B-209ENST00000494080 NSFL1CQ9UNZ2 370 aaKnown RBP18.7■□□□□ 0.58
CCDC88B-209ENST00000494080 ABCA9Q8IUA7 1624 aa18.7■□□□□ 0.58
CCDC88B-209ENST00000494080 SF3B2Q13435 895 aaKnown RBP18.7■□□□□ 0.58
CCDC88B-209ENST00000494080 ZNF75DP51815 510 aa18.69■□□□□ 0.58
CCDC88B-209ENST00000494080 SEC63Q9UGP8 760 aaKnown RBP18.69■□□□□ 0.58
CCDC88B-209ENST00000494080 LMOD1P29536 600 aaPredicted RBP18.69■□□□□ 0.58
CCDC88B-209ENST00000494080 KBTBD3Q8NAB2 608 aa18.69■□□□□ 0.58
CCDC88B-209ENST00000494080 RSPH14Q9UHP6 348 aa18.69■□□□□ 0.58
CCDC88B-209ENST00000494080 SH3TC1Q8TE82 1336 aa18.69■□□□□ 0.58
CCDC88B-209ENST00000494080 ALKQ9UM73 1620 aa18.69■□□□□ 0.58
CCDC88B-209ENST00000494080 RPS6KB1P23443 525 aa18.69■□□□□ 0.58
CCDC88B-209ENST00000494080 PDE4BQ07343 736 aa18.69■□□□□ 0.58
CCDC88B-209ENST00000494080 HSP90AA4PQ58FG1 418 aa18.69■□□□□ 0.58
CCDC88B-209ENST00000494080 ADGRB3O60242 1522 aa18.68■□□□□ 0.58
CCDC88B-209ENST00000494080 CCDC194A0A1B0GVG4 234 aa18.68■□□□□ 0.58
CCDC88B-209ENST00000494080 CAPN2P17655 700 aa18.68■□□□□ 0.58
CCDC88B-209ENST00000494080 NCOA5Q9HCD5 579 aaKnown RBP18.68■□□□□ 0.58
CCDC88B-209ENST00000494080 ZNHIT6Q9NWK9 470 aaKnown RBP18.68■□□□□ 0.58
CCDC88B-209ENST00000494080 UBASH3AP57075 661 aa18.68■□□□□ 0.58
CCDC88B-209ENST00000494080 ESR2Q92731 530 aa18.68■□□□□ 0.58
CCDC88B-209ENST00000494080 RASSF4Q9H2L5 321 aa18.68■□□□□ 0.58
CCDC88B-209ENST00000494080 CEP152O94986 1710 aa18.68■□□□□ 0.58
CCDC88B-209ENST00000494080 TAF5LO75529 589 aa18.68■□□□□ 0.58
CCDC88B-209ENST00000494080 DHX37Q8IY37 1157 aaKnown RBP18.68■□□□□ 0.58
CCDC88B-209ENST00000494080 KRT23Q9C075 422 aa18.68■□□□□ 0.58
CCDC88B-209ENST00000494080 TANGO6Q9C0B7 1094 aa18.68■□□□□ 0.58
CCDC88B-209ENST00000494080 PTH1RQ03431 593 aa18.67■□□□□ 0.58
CCDC88B-209ENST00000494080 CRNKL1Q9BZJ0 848 aaKnown RBP18.67■□□□□ 0.58
CCDC88B-209ENST00000494080 LMTK3Q96Q04 1460 aa18.67■□□□□ 0.58
CCDC88B-209ENST00000494080 BAG3O95817 575 aa18.67■□□□□ 0.58
CCDC88B-209ENST00000494080 RTN1Q16799 776 aa18.67■□□□□ 0.58
CCDC88B-209ENST00000494080 LDHCP07864 332 aa18.67■□□□□ 0.58
CCDC88B-209ENST00000494080 ZKSCAN3Q9BRR0 538 aa18.67■□□□□ 0.58
CCDC88B-209ENST00000494080 KDRP35968 1356 aa18.67■□□□□ 0.58
CCDC88B-209ENST00000494080 ERBB3P21860 1342 aa18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 CCDC24Q8N4L8 307 aa18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 IFNKQ9P0W0 207 aa18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 ZNF215Q9UL58 517 aaPredicted RBP18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 A0A0D9SFI3 127 aa18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 GOLGA6L9A6NEM1 432 aa18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 MBD4O95243 580 aa18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 TPTE2Q6XPS3 522 aa18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 SEC62Q99442 399 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 KAT14Q9H8E8 782 aa18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 SHTN1A0MZ66 631 aa18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 CCDC96Q2M329 555 aa18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 CCDC181Q5TID7 509 aa18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 KRBA2Q6ZNG9 492 aa18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 HELLSQ9NRZ9 838 aa18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 SRRTQ9BXP5 876 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-209ENST00000494080 NPHP4O75161 1426 aaPredicted RBP18.65■□□□□ 0.58
CCDC88B-209ENST00000494080 LIG1P18858 919 aa18.65■□□□□ 0.58
CCDC88B-209ENST00000494080 IFIT1BQ5T764 474 aaKnown RBP18.65■□□□□ 0.58
CCDC88B-209ENST00000494080 CNNM2Q9H8M5 875 aa18.65■□□□□ 0.58
CCDC88B-209ENST00000494080 RNF216Q9NWF9 866 aaPredicted RBP18.65■□□□□ 0.58
CCDC88B-209ENST00000494080 F8W031 263 aaPredicted RBP18.65■□□□□ 0.58
CCDC88B-209ENST00000494080 SYKP43405 635 aa18.65■□□□□ 0.58
CCDC88B-209ENST00000494080 SETD1BQ9UPS6 1966 aaKnown RBP18.65■□□□□ 0.58
CCDC88B-209ENST00000494080 ERVV-2B6SEH9 535 aa18.65■□□□□ 0.58
CCDC88B-209ENST00000494080 CCDC102BQ68D86 513 aa18.65■□□□□ 0.58
CCDC88B-209ENST00000494080 CCDC148Q8NFR7 591 aa18.65■□□□□ 0.58
CCDC88B-209ENST00000494080 RTCBQ9Y3I0 505 aaKnown RBP18.65■□□□□ 0.58
CCDC88B-209ENST00000494080 TCIRG1Q13488 830 aa18.64■□□□□ 0.58
CCDC88B-209ENST00000494080 MRPS27Q92552 414 aaKnown RBP18.64■□□□□ 0.58
CCDC88B-209ENST00000494080 PDLIM2Q96JY6 352 aa18.64■□□□□ 0.58
CCDC88B-209ENST00000494080 PHACTR2O75167 634 aa18.64■□□□□ 0.57
CCDC88B-209ENST00000494080 ZAP70P43403 619 aa18.64■□□□□ 0.57
CCDC88B-209ENST00000494080 MAP9Q49MG5 647 aa18.64■□□□□ 0.57
CCDC88B-209ENST00000494080 MAGEB6P1A0A0J9YX57 407 aa18.64■□□□□ 0.57
CCDC88B-209ENST00000494080 B4E1Z4 1266 aa18.64■□□□□ 0.57
CCDC88B-209ENST00000494080 GNPATO15228 680 aa18.64■□□□□ 0.57
CCDC88B-209ENST00000494080 GPAA1O43292 621 aa18.64■□□□□ 0.57
CCDC88B-209ENST00000494080 MNAT1P51948 309 aa18.64■□□□□ 0.57
CCDC88B-209ENST00000494080 SPTY2D1Q68D10 685 aaPredicted RBP18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms