RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 GOLGA6L19H0YKK7 550 aa21.01■□□□□ 0.95
VIM-206ENST00000487938 GPTP24298 496 aa21.01■□□□□ 0.95
VIM-206ENST00000487938 LRRFIP1Q32MZ4 808 aaKnown RBP21.01■□□□□ 0.95
VIM-206ENST00000487938 ENGASEQ8NFI3 743 aa21.01■□□□□ 0.95
VIM-206ENST00000487938 CLIP2Q9UDT6 1046 aa21.01■□□□□ 0.95
VIM-206ENST00000487938 KLF18A0A0U1RQI7 1052 aa21■□□□□ 0.95
VIM-206ENST00000487938 KINO60870 393 aaKnown RBP21■□□□□ 0.95
VIM-206ENST00000487938 POLR3DP05423 398 aaPredicted RBP21■□□□□ 0.95
VIM-206ENST00000487938 KIF6Q6ZMV9 814 aa21■□□□□ 0.95
VIM-206ENST00000487938 GJB4Q9NTQ9 266 aa21■□□□□ 0.95
VIM-206ENST00000487938 PCDHA7Q9UN72 937 aa21■□□□□ 0.95
VIM-206ENST00000487938 CTAGE5O15320 804 aa20.99■□□□□ 0.95
VIM-206ENST00000487938 PCCAP05165 728 aaPredicted RBP20.99■□□□□ 0.95
VIM-206ENST00000487938 ZFYP08048 801 aaPredicted RBP20.99■□□□□ 0.95
VIM-206ENST00000487938 ZSCAN25Q6NSZ9 544 aa20.99■□□□□ 0.95
VIM-206ENST00000487938 CSF1RP07333 972 aa20.99■□□□□ 0.95
VIM-206ENST00000487938 FAM160A1Q05DH4 1040 aa20.99■□□□□ 0.95
VIM-206ENST00000487938 HLFQ16534 295 aa20.99■□□□□ 0.95
VIM-206ENST00000487938 STX1AQ16623 288 aa20.99■□□□□ 0.95
VIM-206ENST00000487938 CCDC144BQ3MJ40 725 aa20.99■□□□□ 0.95
VIM-206ENST00000487938 ATL3Q6DD88 541 aa20.99■□□□□ 0.95
VIM-206ENST00000487938 CCDC144CPQ8IYA2 1237 aa20.99■□□□□ 0.95
VIM-206ENST00000487938 APPBP2Q92624 585 aa20.99■□□□□ 0.95
VIM-206ENST00000487938 MYH15Q9Y2K3 1946 aa20.99■□□□□ 0.95
VIM-206ENST00000487938 EVCP57679 992 aa20.98■□□□□ 0.95
VIM-206ENST00000487938 METTL24Q5JXM2 366 aa20.98■□□□□ 0.95
VIM-206ENST00000487938 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.98■□□□□ 0.95
VIM-206ENST00000487938 ZBTB38Q8NAP3 1195 aaPredicted RBP20.98■□□□□ 0.95
VIM-206ENST00000487938 CLIC4Q9Y696 253 aa20.98■□□□□ 0.95
VIM-206ENST00000487938 A0A1B0GVL5 298 aa20.98■□□□□ 0.95
VIM-206ENST00000487938 GOLGA8BA8MQT2 603 aa20.98■□□□□ 0.95
VIM-206ENST00000487938 ZNF213O14771 459 aa20.98■□□□□ 0.95
VIM-206ENST00000487938 GPAA1O43292 621 aa20.98■□□□□ 0.95
VIM-206ENST00000487938 CAVIN2O95810 425 aa20.98■□□□□ 0.95
VIM-206ENST00000487938 GTF2F1P35269 517 aaKnown RBP eCLIP20.98■□□□□ 0.95
VIM-206ENST00000487938 ANTXR2P58335 489 aa20.98■□□□□ 0.95
VIM-206ENST00000487938 TRIM28Q13263 835 aaKnown RBP20.98■□□□□ 0.95
VIM-206ENST00000487938 MB21D2Q8IYB1 491 aaPredicted RBP20.98■□□□□ 0.95
VIM-206ENST00000487938 PIGBQ92521 554 aa20.98■□□□□ 0.95
VIM-206ENST00000487938 C8orf76Q96K31 380 aa20.98■□□□□ 0.95
VIM-206ENST00000487938 DENND2AQ9ULE3 1009 aa20.98■□□□□ 0.95
VIM-206ENST00000487938 HPS5Q9UPZ3 1129 aa20.98■□□□□ 0.95
VIM-206ENST00000487938 TNS2Q63HR2 1409 aa20.98■□□□□ 0.95
VIM-206ENST00000487938 NWD2Q9ULI1 1742 aa20.97■□□□□ 0.95
VIM-206ENST00000487938 ATP2B3Q16720 1220 aa20.97■□□□□ 0.95
VIM-206ENST00000487938 LDHAL6AQ6ZMR3 332 aa20.97■□□□□ 0.95
VIM-206ENST00000487938 ZNF710Q8N1W2 664 aa20.97■□□□□ 0.95
VIM-206ENST00000487938 FBXL16Q8N461 479 aa20.97■□□□□ 0.95
VIM-206ENST00000487938 CACTINQ8WUQ7 758 aaKnown RBP20.97■□□□□ 0.95
VIM-206ENST00000487938 FBXO3Q9UK99 471 aa20.97■□□□□ 0.95
VIM-206ENST00000487938 RIOK3O14730 519 aaKnown RBP20.97■□□□□ 0.95
VIM-206ENST00000487938 MCAMP43121 646 aa20.97■□□□□ 0.95
VIM-206ENST00000487938 NCOA7Q8NI08 942 aa20.97■□□□□ 0.95
VIM-206ENST00000487938 GREM2Q9H772 168 aa20.97■□□□□ 0.95
VIM-206ENST00000487938 ORC3Q9UBD5 711 aaPredicted RBP20.97■□□□□ 0.95
VIM-206ENST00000487938 TAOK2Q9UL54 1235 aa20.97■□□□□ 0.95
VIM-206ENST00000487938 SPEF2Q9C093 1822 aa20.96■□□□□ 0.95
VIM-206ENST00000487938 KDM4FA0A1W2PPD8 638 aa20.96■□□□□ 0.95
VIM-206ENST00000487938 BECN2A8MW95 431 aa20.96■□□□□ 0.95
VIM-206ENST00000487938 ITGA6P23229 1130 aa20.96■□□□□ 0.95
VIM-206ENST00000487938 CHAF1AQ13111 956 aaPredicted RBP20.96■□□□□ 0.95
VIM-206ENST00000487938 RALYLQ86SE5 291 aaKnown RBP20.96■□□□□ 0.95
VIM-206ENST00000487938 CHMP4CQ96CF2 233 aa20.96■□□□□ 0.95
VIM-206ENST00000487938 RTEL1Q9NZ71 1219 aa20.96■□□□□ 0.95
VIM-206ENST00000487938 RIPOR2Q9Y4F9 1068 aa20.96■□□□□ 0.95
VIM-206ENST00000487938 SF3A1Q15459 793 aaKnown RBP20.95■□□□□ 0.95
VIM-206ENST00000487938 PLA2G12BQ9BX93 195 aa20.95■□□□□ 0.95
VIM-206ENST00000487938 PAPPAQ13219 1627 aa20.95■□□□□ 0.94
VIM-206ENST00000487938 CPLX1O14810 134 aa20.95■□□□□ 0.94
VIM-206ENST00000487938 MTERF4Q7Z6M4 381 aaKnown RBP20.95■□□□□ 0.94
VIM-206ENST00000487938 DHX40Q8IX18 779 aaKnown RBP20.95■□□□□ 0.94
VIM-206ENST00000487938 NKX2-3Q8TAU0 364 aa20.95■□□□□ 0.94
VIM-206ENST00000487938 SDF4Q9BRK5 362 aa20.95■□□□□ 0.94
VIM-206ENST00000487938 NDUFA8P51970 172 aa20.94■□□□□ 0.94
VIM-206ENST00000487938 ARID5BQ14865 1188 aa20.94■□□□□ 0.94
VIM-206ENST00000487938 STK38Q15208 465 aa20.94■□□□□ 0.94
VIM-206ENST00000487938 ADALQ6DHV7 355 aa20.94■□□□□ 0.94
VIM-206ENST00000487938 FMR1NBQ8N0W7 255 aaPredicted RBP20.94■□□□□ 0.94
VIM-206ENST00000487938 LINC00301Q8NCQ3 95 aa20.94■□□□□ 0.94
VIM-206ENST00000487938 TTLL11Q8NHH1 800 aa20.94■□□□□ 0.94
VIM-206ENST00000487938 MRPS27Q92552 414 aaKnown RBP20.94■□□□□ 0.94
VIM-206ENST00000487938 CNNM1Q9NRU3 951 aa20.94■□□□□ 0.94
VIM-206ENST00000487938 DHX16O60231 1041 aaKnown RBP20.94■□□□□ 0.94
VIM-206ENST00000487938 SLC9C2Q5TAH2 1124 aa20.94■□□□□ 0.94
VIM-206ENST00000487938 GIGYF2Q6Y7W6 1299 aaKnown RBP20.94■□□□□ 0.94
VIM-206ENST00000487938 FBXO18Q8NFZ0 1043 aa20.94■□□□□ 0.94
VIM-206ENST00000487938 C16orf45Q96MC5 204 aaPredicted RBP20.94■□□□□ 0.94
VIM-206ENST00000487938 ANO10Q9NW15 660 aa20.94■□□□□ 0.94
VIM-206ENST00000487938 STARD3NLO95772 234 aa20.93■□□□□ 0.94
VIM-206ENST00000487938 NLRP10Q86W26 655 aa20.93■□□□□ 0.94
VIM-206ENST00000487938 MAP3K15Q6ZN16 1313 aa20.93■□□□□ 0.94
VIM-206ENST00000487938 APPP05067 770 aa20.93■□□□□ 0.94
VIM-206ENST00000487938 CDC25BP30305 580 aa20.93■□□□□ 0.94
VIM-206ENST00000487938 SARM1Q6SZW1 724 aa20.93■□□□□ 0.94
VIM-206ENST00000487938 TEX13AQ9BXU3 409 aaPredicted RBP20.93■□□□□ 0.94
VIM-206ENST00000487938 NBPF3Q9H094 633 aa20.93■□□□□ 0.94
VIM-206ENST00000487938 BCL2L12Q9HB09 334 aa20.93■□□□□ 0.94
VIM-206ENST00000487938 KIF28PB7ZC32 967 aa20.92■□□□□ 0.94
VIM-206ENST00000487938 AOPEPQ8N6M6 819 aa20.92■□□□□ 0.94
VIM-206ENST00000487938 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms