RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 RXRAP19793 462 aa12.68□□□□□ -0.38
HDAC6-228ENST00000486227 SIRT2Q8IXJ6 389 aa12.68□□□□□ -0.38
HDAC6-228ENST00000486227 TIGD1Q96MW7 591 aa12.68□□□□□ -0.38
HDAC6-228ENST00000486227 DACT1Q9NYF0 836 aa12.68□□□□□ -0.38
HDAC6-228ENST00000486227 TRPC5Q9UL62 973 aaPredicted RBP12.68□□□□□ -0.38
HDAC6-228ENST00000486227 PTPDC1A2A3K4 754 aa12.68□□□□□ -0.38
HDAC6-228ENST00000486227 CCDC24Q8N4L8 307 aa12.68□□□□□ -0.38
HDAC6-228ENST00000486227 PUM3Q15397 648 aaKnown RBP12.68□□□□□ -0.38
HDAC6-228ENST00000486227 LMTK2Q8IWU2 1503 aa12.68□□□□□ -0.38
HDAC6-228ENST00000486227 EIF3JO75822 258 aaKnown RBP12.67□□□□□ -0.38
HDAC6-228ENST00000486227 RPS6KB1P23443 525 aa12.67□□□□□ -0.38
HDAC6-228ENST00000486227 IBTKQ9P2D0 1353 aaPredicted RBP12.67□□□□□ -0.38
HDAC6-228ENST00000486227 CAVIN2O95810 425 aa12.67□□□□□ -0.38
HDAC6-228ENST00000486227 ODF2Q5BJF6 829 aa12.67□□□□□ -0.38
HDAC6-228ENST00000486227 ANKRD2Q9GZV1 360 aa12.67□□□□□ -0.38
HDAC6-228ENST00000486227 ERLIN1O75477 346 aa12.67□□□□□ -0.38
HDAC6-228ENST00000486227 BBXQ8WY36 941 aaPredicted RBP12.67□□□□□ -0.38
HDAC6-228ENST00000486227 CUL5Q93034 780 aa12.67□□□□□ -0.38
HDAC6-228ENST00000486227 ASAP1Q9ULH1 1129 aa12.67□□□□□ -0.38
HDAC6-228ENST00000486227 ATP5JP18859 108 aa12.67□□□□□ -0.38
HDAC6-228ENST00000486227 GNAT2P19087 354 aa12.67□□□□□ -0.38
HDAC6-228ENST00000486227 GAS2L3Q86XJ1 694 aa12.67□□□□□ -0.38
HDAC6-228ENST00000486227 CARD10Q9BWT7 1032 aa12.67□□□□□ -0.38
HDAC6-228ENST00000486227 SFPQP23246 707 aaKnown RBP eCLIP12.66□□□□□ -0.38
HDAC6-228ENST00000486227 HSPA4P34932 840 aa12.66□□□□□ -0.38
HDAC6-228ENST00000486227 NF2P35240 595 aa12.66□□□□□ -0.38
HDAC6-228ENST00000486227 APPBP2Q92624 585 aa12.66□□□□□ -0.38
HDAC6-228ENST00000486227 QTRT2Q9H974 415 aaKnown RBP12.66□□□□□ -0.38
HDAC6-228ENST00000486227 TSPY3P0CV98 308 aa12.66□□□□□ -0.38
HDAC6-228ENST00000486227 TSPY8P0CW00 308 aa12.66□□□□□ -0.38
HDAC6-228ENST00000486227 MARCKSP29966 332 aaPredicted RBP12.66□□□□□ -0.38
HDAC6-228ENST00000486227 BMS1Q14692 1282 aaKnown RBP12.66□□□□□ -0.38
HDAC6-228ENST00000486227 ZAP70P43403 619 aa12.66□□□□□ -0.38
HDAC6-228ENST00000486227 STX1AQ16623 288 aa12.66□□□□□ -0.38
HDAC6-228ENST00000486227 RBM17Q96I25 401 aaKnown RBP12.66□□□□□ -0.38
HDAC6-228ENST00000486227 MCM9Q9NXL9 1143 aa12.66□□□□□ -0.38
HDAC6-228ENST00000486227 GPAA1O43292 621 aa12.66□□□□□ -0.38
HDAC6-228ENST00000486227 CCDC102BQ68D86 513 aa12.66□□□□□ -0.38
HDAC6-228ENST00000486227 CAGE1Q8TC20 777 aa12.66□□□□□ -0.38
HDAC6-228ENST00000486227 FAM200AQ8TCP9 573 aa12.66□□□□□ -0.38
HDAC6-228ENST00000486227 CEP135Q66GS9 1140 aa12.65□□□□□ -0.38
HDAC6-228ENST00000486227 ZKSCAN3Q9BRR0 538 aa12.65□□□□□ -0.38
HDAC6-228ENST00000486227 PPRC1Q5VV67 1664 aaKnown RBP12.65□□□□□ -0.38
HDAC6-228ENST00000486227 ZNF772Q68DY9 489 aaPredicted RBP12.65□□□□□ -0.38
HDAC6-228ENST00000486227 RUFY1Q96T51 708 aa12.65□□□□□ -0.38
HDAC6-228ENST00000486227 KCNG4Q8TDN1 519 aa12.65□□□□□ -0.38
HDAC6-228ENST00000486227 OGFRQ9NZT2 677 aa12.65□□□□□ -0.38
HDAC6-228ENST00000486227 PALD1Q9ULE6 856 aa12.65□□□□□ -0.38
HDAC6-228ENST00000486227 AXIN2Q9Y2T1 843 aa12.65□□□□□ -0.38
HDAC6-228ENST00000486227 WDR17Q8IZU2 1322 aa12.65□□□□□ -0.39
HDAC6-228ENST00000486227 ZNF335Q9H4Z2 1342 aaPredicted RBP12.65□□□□□ -0.39
HDAC6-228ENST00000486227 B4E1Z4 1266 aa12.64□□□□□ -0.39
HDAC6-228ENST00000486227 SYKP43405 635 aa12.64□□□□□ -0.39
HDAC6-228ENST00000486227 GSDMDP57764 484 aa12.64□□□□□ -0.39
HDAC6-228ENST00000486227 LPIN2Q92539 896 aa12.64□□□□□ -0.39
HDAC6-228ENST00000486227 LMBRD1Q9NUN5 540 aa12.64□□□□□ -0.39
HDAC6-228ENST00000486227 ERBB4Q15303 1308 aa12.64□□□□□ -0.39
HDAC6-228ENST00000486227 PICALMQ13492 652 aa12.64□□□□□ -0.39
HDAC6-228ENST00000486227 FAM173BQ6P4H8 233 aa12.64□□□□□ -0.39
HDAC6-228ENST00000486227 UNC5CLQ8IV45 518 aa12.64□□□□□ -0.39
HDAC6-228ENST00000486227 DEF6Q9H4E7 631 aa12.64□□□□□ -0.39
HDAC6-228ENST00000486227 ARMT1Q9H993 441 aa12.64□□□□□ -0.39
HDAC6-228ENST00000486227 ANKARQ7Z5J8 1434 aa12.64□□□□□ -0.39
HDAC6-228ENST00000486227 EIF5P55010 431 aaKnown RBP12.64□□□□□ -0.39
HDAC6-228ENST00000486227 KRI1Q8N9T8 703 aaKnown RBP12.64□□□□□ -0.39
HDAC6-228ENST00000486227 MRPS27Q92552 414 aaKnown RBP12.64□□□□□ -0.39
HDAC6-228ENST00000486227 NCOA5Q9HCD5 579 aaKnown RBP12.64□□□□□ -0.39
HDAC6-228ENST00000486227 UBA7P41226 1012 aa12.64□□□□□ -0.39
HDAC6-228ENST00000486227 PTH1RQ03431 593 aa12.64□□□□□ -0.39
HDAC6-228ENST00000486227 LRRC24Q50LG9 513 aa12.64□□□□□ -0.39
HDAC6-228ENST00000486227 A0A0D9SFI3 127 aa12.63□□□□□ -0.39
HDAC6-228ENST00000486227 LDHBP07195 334 aaKnown RBP12.63□□□□□ -0.39
HDAC6-228ENST00000486227 LMOD1P29536 600 aaPredicted RBP12.63□□□□□ -0.39
HDAC6-228ENST00000486227 MAPK8IP2Q13387 824 aaPredicted RBP12.63□□□□□ -0.39
HDAC6-228ENST00000486227 CCDC12Q8WUD4 166 aaPredicted RBP12.63□□□□□ -0.39
HDAC6-228ENST00000486227 EHMT1Q9H9B1 1298 aa12.63□□□□□ -0.39
HDAC6-228ENST00000486227 INO80Q9ULG1 1556 aaPredicted RBP12.63□□□□□ -0.39
HDAC6-228ENST00000486227 DIP2CQ9Y2E4 1556 aa12.63□□□□□ -0.39
HDAC6-228ENST00000486227 RIMBP2O15034 1052 aa12.63□□□□□ -0.39
HDAC6-228ENST00000486227 ZFYVE27Q5T4F4 411 aa12.63□□□□□ -0.39
HDAC6-228ENST00000486227 PNPLA6Q8IY17 1366 aa12.63□□□□□ -0.39
HDAC6-228ENST00000486227 TULP4Q9NRJ4 1543 aa12.63□□□□□ -0.39
HDAC6-228ENST00000486227 CHMP4BP1P59074 171 aa12.63□□□□□ -0.39
HDAC6-228ENST00000486227 RBM26Q5T8P6 1007 aaKnown RBP12.63□□□□□ -0.39
HDAC6-228ENST00000486227 CCDC186Q7Z3E2 898 aa12.63□□□□□ -0.39
HDAC6-228ENST00000486227 SEC62Q99442 399 aaKnown RBP12.63□□□□□ -0.39
HDAC6-228ENST00000486227 DENND2AQ9ULE3 1009 aa12.63□□□□□ -0.39
HDAC6-228ENST00000486227 RAB34Q9BZG1 259 aa12.63□□□□□ -0.39
HDAC6-228ENST00000486227 VEZTQ9HBM0 779 aa12.63□□□□□ -0.39
HDAC6-228ENST00000486227 SETBP1Q9Y6X0 1596 aa12.62□□□□□ -0.39
HDAC6-228ENST00000486227 H0YHG0 523 aa12.62□□□□□ -0.39
HDAC6-228ENST00000486227 SPTLC2O15270 562 aa12.62□□□□□ -0.39
HDAC6-228ENST00000486227 PLCG2P16885 1265 aa12.62□□□□□ -0.39
HDAC6-228ENST00000486227 ANO6Q4KMQ2 910 aa12.62□□□□□ -0.39
HDAC6-228ENST00000486227 COPRSQ9NQ92 184 aa12.62□□□□□ -0.39
HDAC6-228ENST00000486227 STAP2Q9UGK3 403 aa12.62□□□□□ -0.39
HDAC6-228ENST00000486227 H0YIN7 160 aa12.62□□□□□ -0.39
HDAC6-228ENST00000486227 TOP1P11387 765 aaKnown RBP12.62□□□□□ -0.39
HDAC6-228ENST00000486227 HIBADHP31937 336 aaKnown RBP12.62□□□□□ -0.39
HDAC6-228ENST00000486227 CTSWP56202 376 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms