RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 HDAC9Q9UKV0 1011 aa21.18■□□□□ 0.98
VIM-205ENST00000485947 RIPOR2Q9Y4F9 1068 aa21.18■□□□□ 0.98
VIM-205ENST00000485947 TRPM7Q96QT4 1865 aa21.18■□□□□ 0.98
VIM-205ENST00000485947 HELBQ8NG08 1087 aaPredicted RBP21.17■□□□□ 0.98
VIM-205ENST00000485947 WDR33Q9C0J8 1336 aaKnown RBP21.17■□□□□ 0.98
VIM-205ENST00000485947 KLRK1P26718 216 aa21.16■□□□□ 0.98
VIM-205ENST00000485947 MAP2K1Q02750 393 aaPredicted RBP21.16■□□□□ 0.98
VIM-205ENST00000485947 SCARF1Q14162 830 aa21.16■□□□□ 0.98
VIM-205ENST00000485947 FBXO3Q9UK99 471 aa21.16■□□□□ 0.98
VIM-205ENST00000485947 HSPA8P11142 646 aaKnown RBP21.15■□□□□ 0.98
VIM-205ENST00000485947 MAP2K2P36507 400 aa21.15■□□□□ 0.98
VIM-205ENST00000485947 RGS19P49795 217 aa21.15■□□□□ 0.98
VIM-205ENST00000485947 GTF2IP78347 998 aa21.15■□□□□ 0.98
VIM-205ENST00000485947 FMR1Q06787 632 aaKnown RBP eCLIP21.15■□□□□ 0.98
VIM-205ENST00000485947 GGA3Q9NZ52 723 aa21.15■□□□□ 0.98
VIM-205ENST00000485947 ZBTB7BO15156 539 aaPredicted RBP21.14■□□□□ 0.97
VIM-205ENST00000485947 SASH1O94885 1247 aa21.14■□□□□ 0.97
VIM-205ENST00000485947 UBTFL1P0CB47 393 aaPredicted RBP21.14■□□□□ 0.97
VIM-205ENST00000485947 CCDC136Q96JN2 1154 aa21.14■□□□□ 0.97
VIM-205ENST00000485947 CAPNS2Q96L46 248 aa21.14■□□□□ 0.97
VIM-205ENST00000485947 MLLT1Q03111 559 aaPredicted RBP21.13■□□□□ 0.97
VIM-205ENST00000485947 C2orf69Q8N8R5 385 aa21.13■□□□□ 0.97
VIM-205ENST00000485947 FBXW7Q969H0 707 aa21.13■□□□□ 0.97
VIM-205ENST00000485947 ZBTB40Q9NUA8 1239 aa21.13■□□□□ 0.97
VIM-205ENST00000485947 FAM205AQ6ZU69 1335 aa21.12■□□□□ 0.97
VIM-205ENST00000485947 PDE8BO95263 885 aa21.12■□□□□ 0.97
VIM-205ENST00000485947 FKBP1BP68106 108 aa21.12■□□□□ 0.97
VIM-205ENST00000485947 ANGEL2Q5VTE6 544 aaKnown RBP21.12■□□□□ 0.97
VIM-205ENST00000485947 MTMR14Q8NCE2 650 aa21.12■□□□□ 0.97
VIM-205ENST00000485947 PUS3Q9BZE2 481 aaKnown RBP21.12■□□□□ 0.97
VIM-205ENST00000485947 GBA2Q9HCG7 927 aaPredicted RBP21.12■□□□□ 0.97
VIM-205ENST00000485947 SNAP23O00161 211 aa21.11■□□□□ 0.97
VIM-205ENST00000485947 WNT10BO00744 389 aa21.11■□□□□ 0.97
VIM-205ENST00000485947 HIBADHP31937 336 aaKnown RBP21.11■□□□□ 0.97
VIM-205ENST00000485947 TDRD7Q8NHU6 1098 aaKnown RBP21.11■□□□□ 0.97
VIM-205ENST00000485947 ZNF408Q9H9D4 720 aa21.11■□□□□ 0.97
VIM-205ENST00000485947 GNAI3P08754 354 aa21.1■□□□□ 0.97
VIM-205ENST00000485947 METTL24Q5JXM2 366 aa21.1■□□□□ 0.97
VIM-205ENST00000485947 ADM5C9JUS6 153 aa21.09■□□□□ 0.97
VIM-205ENST00000485947 EYA2O00167 538 aa21.09■□□□□ 0.97
VIM-205ENST00000485947 CAVIN4Q5BKX8 364 aa21.09■□□□□ 0.97
VIM-205ENST00000485947 PAXIP1Q6ZW49 1069 aaPredicted RBP21.09■□□□□ 0.97
VIM-205ENST00000485947 KIAA0825Q8IV33 1275 aa21.09■□□□□ 0.97
VIM-205ENST00000485947 VGLL2Q8N8G2 317 aa21.09■□□□□ 0.97
VIM-205ENST00000485947 ZBED3Q96IU2 234 aaPredicted RBP21.09■□□□□ 0.97
VIM-205ENST00000485947 FAM84BQ96KN1 310 aaPredicted RBP21.09■□□□□ 0.97
VIM-205ENST00000485947 MXD3Q9BW11 206 aa21.09■□□□□ 0.97
VIM-205ENST00000485947 A0A1B0GUL6 1792 aa21.09■□□□□ 0.97
VIM-205ENST00000485947 CIAO1O76071 339 aa21.08■□□□□ 0.97
VIM-205ENST00000485947 RFX5P48382 616 aaPredicted RBP21.08■□□□□ 0.97
VIM-205ENST00000485947 HUNKP57058 714 aa21.08■□□□□ 0.97
VIM-205ENST00000485947 NOGQ13253 232 aa21.08■□□□□ 0.97
VIM-205ENST00000485947 NBPF9Q3BBW0 867 aa21.08■□□□□ 0.97
VIM-205ENST00000485947 LRRC24Q50LG9 513 aa21.08■□□□□ 0.97
VIM-205ENST00000485947 B4GALNT3Q6L9W6 998 aa21.08■□□□□ 0.97
VIM-205ENST00000485947 CYP4F22Q6NT55 531 aa21.08■□□□□ 0.97
VIM-205ENST00000485947 FBXO33Q7Z6M2 555 aa21.08■□□□□ 0.97
VIM-205ENST00000485947 APOBEC3FQ8IUX4 373 aaKnown RBP21.08■□□□□ 0.97
VIM-205ENST00000485947 CCDC102AQ96A19 550 aa21.08■□□□□ 0.97
VIM-205ENST00000485947 CDCA5Q96FF9 252 aa21.08■□□□□ 0.97
VIM-205ENST00000485947 ZNF646O15015 1829 aaPredicted RBP21.07■□□□□ 0.96
VIM-205ENST00000485947 PTPN12Q05209 780 aaKnown RBP21.07■□□□□ 0.96
VIM-205ENST00000485947 PUM3Q15397 648 aaKnown RBP21.07■□□□□ 0.96
VIM-205ENST00000485947 DLGAP5Q15398 846 aa21.07■□□□□ 0.96
VIM-205ENST00000485947 VPS37DQ86XT2 251 aa21.07■□□□□ 0.96
VIM-205ENST00000485947 CERS5Q8N5B7 392 aa21.07■□□□□ 0.96
VIM-205ENST00000485947 BEGAINQ9BUH8 593 aa21.07■□□□□ 0.96
VIM-205ENST00000485947 THSD7BQ9C0I4 1608 aa21.07■□□□□ 0.96
VIM-205ENST00000485947 ASTN2O75129 1339 aaPredicted RBP21.06■□□□□ 0.96
VIM-205ENST00000485947 PDE4DIPQ5VU43 2346 aa21.06■□□□□ 0.96
VIM-205ENST00000485947 CA12O43570 354 aa21.06■□□□□ 0.96
VIM-205ENST00000485947 IFIT1P09914 478 aaKnown RBP21.06■□□□□ 0.96
VIM-205ENST00000485947 RGMBQ6NW40 437 aa21.06■□□□□ 0.96
VIM-205ENST00000485947 TBC1D22AQ8WUA7 517 aa21.06■□□□□ 0.96
VIM-205ENST00000485947 MEIS3Q99687 375 aa21.06■□□□□ 0.96
VIM-205ENST00000485947 MYO1BO43795 1136 aa21.05■□□□□ 0.96
VIM-205ENST00000485947 NF2P35240 595 aa21.05■□□□□ 0.96
VIM-205ENST00000485947 GYG1P46976 350 aa21.05■□□□□ 0.96
VIM-205ENST00000485947 POLR2AP24928 1970 aaKnown RBP21.05■□□□□ 0.96
VIM-205ENST00000485947 CCDC85CA6NKD9 419 aa21.04■□□□□ 0.96
VIM-205ENST00000485947 ZBTB22O15209 634 aa21.04■□□□□ 0.96
VIM-205ENST00000485947 FGFR2P21802 821 aa21.04■□□□□ 0.96
VIM-205ENST00000485947 MTX1Q13505 466 aa21.04■□□□□ 0.96
VIM-205ENST00000485947 MFSD14BQ5SR56 506 aa21.04■□□□□ 0.96
VIM-205ENST00000485947 LPIN2Q92539 896 aa21.04■□□□□ 0.96
VIM-205ENST00000485947 COPRSQ9NQ92 184 aa21.04■□□□□ 0.96
VIM-205ENST00000485947 SERPINA10Q9UK55 444 aa21.04■□□□□ 0.96
VIM-205ENST00000485947 SUGT1Q9Y2Z0 365 aa21.04■□□□□ 0.96
VIM-205ENST00000485947 PCDHB15Q9Y5E8 787 aa21.04■□□□□ 0.96
VIM-205ENST00000485947 PPP2R3BQ9Y5P8 575 aa21.04■□□□□ 0.96
VIM-205ENST00000485947 LRRFIP2Q9Y608 721 aaKnown RBP21.04■□□□□ 0.96
VIM-205ENST00000485947 COL1A1P02452 1464 aaPredicted RBP21.04■□□□□ 0.96
VIM-205ENST00000485947 IL15P40933 162 aaPredicted RBP21.03■□□□□ 0.96
VIM-205ENST00000485947 REM2Q8IYK8 340 aaPredicted RBP21.03■□□□□ 0.96
VIM-205ENST00000485947 KLHDC4Q8TBB5 520 aa21.03■□□□□ 0.96
VIM-205ENST00000485947 TNRC18O15417 2968 aaPredicted RBP21.02■□□□□ 0.96
VIM-205ENST00000485947 GNAI2P04899 355 aa21.02■□□□□ 0.96
VIM-205ENST00000485947 SLC5A1P13866 664 aa21.02■□□□□ 0.96
VIM-205ENST00000485947 HDLBPQ00341 1268 aaKnown RBP21.02■□□□□ 0.96
VIM-205ENST00000485947 CENPQQ7L2Z9 268 aaPredicted RBP21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms