RNA–Protein interactions for RNA: ENST00000471968.1

HDAC3-206, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-206ENST00000471968 CPA4Q9UI42 421 aa9.05□□□□□ -0.96
HDAC3-206ENST00000471968 TCF20Q9UGU0 1960 aaKnown RBP9.04□□□□□ -0.96
HDAC3-206ENST00000471968 UNCXA6NJT0 531 aa9.04□□□□□ -0.96
HDAC3-206ENST00000471968 IREB2P48200 963 aaKnown RBP9.04□□□□□ -0.96
HDAC3-206ENST00000471968 GTF2A2P52657 109 aa9.04□□□□□ -0.96
HDAC3-206ENST00000471968 GRAPQ13588 217 aa9.04□□□□□ -0.96
HDAC3-206ENST00000471968 CCDC85BQ15834 202 aaPredicted RBP9.04□□□□□ -0.96
HDAC3-206ENST00000471968 NBPF10Q6P3W6 841 aaKnown RBP9.04□□□□□ -0.96
HDAC3-206ENST00000471968 DDX46Q7L014 1031 aaKnown RBP9.04□□□□□ -0.96
HDAC3-206ENST00000471968 ANKRD13AQ8IZ07 590 aa9.04□□□□□ -0.96
HDAC3-206ENST00000471968 ZBTB38Q8NAP3 1195 aaPredicted RBP9.04□□□□□ -0.96
HDAC3-206ENST00000471968 GRAPLQ8TC17 118 aaPredicted RBP9.04□□□□□ -0.96
HDAC3-206ENST00000471968 KHSRPQ92945 711 aaKnown RBP eCLIP9.04□□□□□ -0.96
HDAC3-206ENST00000471968 FBXL18Q96ME1 805 aa9.04□□□□□ -0.96
HDAC3-206ENST00000471968 GABRQQ9UN88 632 aa9.04□□□□□ -0.96
HDAC3-206ENST00000471968 DDX60Q8IY21 1712 aaKnown RBP9.04□□□□□ -0.96
HDAC3-206ENST00000471968 DNAH12Q6ZR08 3092 aa9.04□□□□□ -0.96
HDAC3-206ENST00000471968 KCNQ3O43525 872 aa9.03□□□□□ -0.96
HDAC3-206ENST00000471968 TEFQ10587 303 aa9.03□□□□□ -0.96
HDAC3-206ENST00000471968 PDE3AQ14432 1141 aa9.03□□□□□ -0.96
HDAC3-206ENST00000471968 C9orf50Q5SZB4 431 aa9.03□□□□□ -0.96
HDAC3-206ENST00000471968 C17orf99Q6UX52 265 aa9.03□□□□□ -0.96
HDAC3-206ENST00000471968 NGEFQ8N5V2 710 aa9.03□□□□□ -0.96
HDAC3-206ENST00000471968 UIMC1Q96RL1 719 aa9.03□□□□□ -0.96
HDAC3-206ENST00000471968 CARD14Q9BXL6 1004 aa9.03□□□□□ -0.96
HDAC3-206ENST00000471968 ZC3H12CQ9C0D7 883 aaKnown RBP9.03□□□□□ -0.96
HDAC3-206ENST00000471968 DEFB129Q9H1M3 183 aa9.03□□□□□ -0.96
HDAC3-206ENST00000471968 PFASO15067 1338 aa9.03□□□□□ -0.96
HDAC3-206ENST00000471968 ATRXP46100 2492 aa9.02□□□□□ -0.97
HDAC3-206ENST00000471968 GPSM2P81274 684 aa9.02□□□□□ -0.97
HDAC3-206ENST00000471968 OGFOD1Q8N543 542 aa9.02□□□□□ -0.97
HDAC3-206ENST00000471968 PHOX2BQ99453 314 aa9.02□□□□□ -0.97
HDAC3-206ENST00000471968 GAS2L1Q99501 681 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-206ENST00000471968 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.02□□□□□ -0.97
HDAC3-206ENST00000471968 PRR33A8MZF0 331 aa9.01□□□□□ -0.97
HDAC3-206ENST00000471968 BTBD19C9JJ37 291 aa9.01□□□□□ -0.97
HDAC3-206ENST00000471968 USP2O75604 605 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-206ENST00000471968 KCNQ1P51787 676 aa9.01□□□□□ -0.97
HDAC3-206ENST00000471968 TFF2Q03403 129 aa9.01□□□□□ -0.97
HDAC3-206ENST00000471968 LRRC26Q2I0M4 334 aa9.01□□□□□ -0.97
HDAC3-206ENST00000471968 AKNAD1Q5T1N1 836 aa9.01□□□□□ -0.97
HDAC3-206ENST00000471968 TMC4Q7Z404 712 aa9.01□□□□□ -0.97
HDAC3-206ENST00000471968 TBC1D16Q8TBP0 767 aa9.01□□□□□ -0.97
HDAC3-206ENST00000471968 TESK2Q96S53 571 aa9.01□□□□□ -0.97
HDAC3-206ENST00000471968 DDX60LQ5H9U9 1706 aaKnown RBP9□□□□□ -0.97
HDAC3-206ENST00000471968 DCHS1Q96JQ0 3298 aa9□□□□□ -0.97
HDAC3-206ENST00000471968 ERVV-1B6SEH8 477 aa9□□□□□ -0.97
HDAC3-206ENST00000471968 FLT3LGP49771 235 aa9□□□□□ -0.97
HDAC3-206ENST00000471968 FCGRTP55899 365 aa9□□□□□ -0.97
HDAC3-206ENST00000471968 MTHFSDQ2M296 383 aaKnown RBP9□□□□□ -0.97
HDAC3-206ENST00000471968 SLC10A5Q5PT55 438 aa9□□□□□ -0.97
HDAC3-206ENST00000471968 PPP1R42Q7Z4L9 355 aa9□□□□□ -0.97
HDAC3-206ENST00000471968 MXD3Q9BW11 206 aa9□□□□□ -0.97
HDAC3-206ENST00000471968 CXXC1Q9P0U4 656 aaPredicted RBP9□□□□□ -0.97
HDAC3-206ENST00000471968 TAOK2Q9UL54 1235 aa9□□□□□ -0.97
HDAC3-206ENST00000471968 COL1A1P02452 1464 aaPredicted RBP9□□□□□ -0.97
HDAC3-206ENST00000471968 KMT2BQ9UMN6 2715 aaPredicted RBP9□□□□□ -0.97
HDAC3-206ENST00000471968 REV3LO60673 3130 aa8.99□□□□□ -0.97
HDAC3-206ENST00000471968 CFAP47Q6ZTR5 3102 aa8.99□□□□□ -0.97
HDAC3-206ENST00000471968 USP17L3A6NCW0 530 aa8.99□□□□□ -0.97
HDAC3-206ENST00000471968 USP17L4A6NCW7 530 aa8.99□□□□□ -0.97
HDAC3-206ENST00000471968 HCLS1P14317 486 aaPredicted RBP8.99□□□□□ -0.97
HDAC3-206ENST00000471968 KCTD2Q14681 263 aa8.99□□□□□ -0.97
HDAC3-206ENST00000471968 SUPT20HL1Q3ZLR7 823 aa8.99□□□□□ -0.97
HDAC3-206ENST00000471968 NBPF12Q5TAG4 269 aaPredicted RBP8.99□□□□□ -0.97
HDAC3-206ENST00000471968 USP17L1Q7RTZ2 530 aa8.99□□□□□ -0.97
HDAC3-206ENST00000471968 PXYLP1Q8TE99 480 aa8.99□□□□□ -0.97
HDAC3-206ENST00000471968 ZBTB3Q9H5J0 574 aa8.99□□□□□ -0.97
HDAC3-206ENST00000471968 ZNF576Q9H609 170 aa8.99□□□□□ -0.97
HDAC3-206ENST00000471968 LRRC37AA6NMS7 1700 aa8.99□□□□□ -0.97
HDAC3-206ENST00000471968 MAP3K15Q6ZN16 1313 aa8.99□□□□□ -0.97
HDAC3-206ENST00000471968 CETPP11597 493 aa8.98□□□□□ -0.97
HDAC3-206ENST00000471968 ITGB8P26012 769 aa8.98□□□□□ -0.97
HDAC3-206ENST00000471968 KIF6Q6ZMV9 814 aa8.98□□□□□ -0.97
HDAC3-206ENST00000471968 ZNF34Q8IZ26 560 aa8.98□□□□□ -0.97
HDAC3-206ENST00000471968 TSPYL2Q9H2G4 693 aaPredicted RBP8.98□□□□□ -0.97
HDAC3-206ENST00000471968 ZCCHC17Q9NP64 241 aaKnown RBP8.98□□□□□ -0.97
HDAC3-206ENST00000471968 COL3A1P02461 1466 aaPredicted RBP8.97□□□□□ -0.97
HDAC3-206ENST00000471968 ZFHX2Q9C0A1 2572 aaPredicted RBP8.97□□□□□ -0.97
HDAC3-206ENST00000471968 BTBD11A6QL63 1104 aa8.97□□□□□ -0.97
HDAC3-206ENST00000471968 PI4K2BG5E9Z4 385 aa8.97□□□□□ -0.97
HDAC3-206ENST00000471968 SNRPA1P09661 255 aaKnown RBP8.97□□□□□ -0.97
HDAC3-206ENST00000471968 DNAJB2P25686 324 aa8.97□□□□□ -0.97
HDAC3-206ENST00000471968 AAK1Q2M2I8 961 aa8.97□□□□□ -0.97
HDAC3-206ENST00000471968 TTLL7Q6ZT98 887 aa8.97□□□□□ -0.97
HDAC3-206ENST00000471968 ERMP1Q7Z2K6 904 aa8.97□□□□□ -0.97
HDAC3-206ENST00000471968 CELF1Q92879 486 aaKnown RBP8.97□□□□□ -0.97
HDAC3-206ENST00000471968 FBXW7Q969H0 707 aa8.97□□□□□ -0.97
HDAC3-206ENST00000471968 UTP14AQ9BVJ6 771 aaKnown RBP8.97□□□□□ -0.97
HDAC3-206ENST00000471968 KCNH6Q9H252 994 aa8.97□□□□□ -0.97
HDAC3-206ENST00000471968 PRDM12Q9H4Q4 367 aa8.97□□□□□ -0.97
HDAC3-206ENST00000471968 PRKAG2Q9UGJ0 569 aa8.97□□□□□ -0.97
HDAC3-206ENST00000471968 UFL1O94874 794 aa8.96□□□□□ -0.98
HDAC3-206ENST00000471968 U2AF1L5P0DN76 240 aaPredicted RBP8.96□□□□□ -0.98
HDAC3-206ENST00000471968 IGFBP4P22692 258 aa8.96□□□□□ -0.98
HDAC3-206ENST00000471968 U2AF1Q01081 240 aaKnown RBP eCLIP8.96□□□□□ -0.98
HDAC3-206ENST00000471968 COL9A2Q14055 689 aaPredicted RBP8.96□□□□□ -0.98
HDAC3-206ENST00000471968 VGLL4Q14135 290 aa8.96□□□□□ -0.98
HDAC3-206ENST00000471968 PARP10Q53GL7 1025 aa8.96□□□□□ -0.98
HDAC3-206ENST00000471968 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms