RNA–Protein interactions for RNA: ENST00000469356.3

SREBF1-208, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 3

Gene SREBF1, Length 1,323 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-208	ENST00000469356	GJA3	Q9Y6H8	435 aa		28.05	■■■□□ 2.08
SREBF1-208	ENST00000469356	GLTPD2	A6NH11	291 aa		28.04	■■■□□ 2.08
SREBF1-208	ENST00000469356	VIL1	P09327	827 aa	Known RBP	28.04	■■■□□ 2.08
SREBF1-208	ENST00000469356	FKBP1A	P62942	108 aa	Known RBP	28.04	■■■□□ 2.08
SREBF1-208	ENST00000469356	LNPK	Q9C0E8	428 aa		28.04	■■■□□ 2.08
SREBF1-208	ENST00000469356	TLR7	Q9NYK1	1049 aa	Known RBP	28.04	■■■□□ 2.08
SREBF1-208	ENST00000469356	PSME4	Q14997	1843 aa		28.04	■■■□□ 2.08
SREBF1-208	ENST00000469356	PDS5A	Q29RF7	1337 aa	Known RBP	28.04	■■■□□ 2.08
SREBF1-208	ENST00000469356	KDM2B	Q8NHM5	1336 aa		28.04	■■■□□ 2.08
SREBF1-208	ENST00000469356	PSMD14	O00487	310 aa		28.03	■■■□□ 2.08
SREBF1-208	ENST00000469356	ERC2	O15083	957 aa		28.03	■■■□□ 2.08
SREBF1-208	ENST00000469356	RPS12	P25398	132 aa	Known RBP	28.03	■■■□□ 2.08
SREBF1-208	ENST00000469356	CHAF1A	Q13111	956 aa	Predicted RBP	28.03	■■■□□ 2.08
SREBF1-208	ENST00000469356	ZGPAT	Q8N5A5	531 aa	Known RBP	28.03	■■■□□ 2.08
SREBF1-208	ENST00000469356	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	28.03	■■■□□ 2.08
SREBF1-208	ENST00000469356	ECHDC1	Q9NTX5	307 aa		28.03	■■■□□ 2.08
SREBF1-208	ENST00000469356	RSBN1L	Q6PCB5	846 aa	Predicted RBP	28.02	■■■□□ 2.08
SREBF1-208	ENST00000469356	AGBL3	Q8NEM8	1001 aa		28.02	■■■□□ 2.08
SREBF1-208	ENST00000469356	TTC41P	Q6P2S7	1318 aa		28.02	■■■□□ 2.08
SREBF1-208	ENST00000469356	ZNF541	Q9H0D2	1346 aa		28.02	■■■□□ 2.08
SREBF1-208	ENST00000469356	SCN9A	Q15858	1988 aa		28.02	■■■□□ 2.08
SREBF1-208	ENST00000469356	MMP14	P50281	582 aa		28.01	■■■□□ 2.07
SREBF1-208	ENST00000469356	KCNQ5	Q9NR82	932 aa		28.01	■■■□□ 2.07
SREBF1-208	ENST00000469356	RASGRF1	Q13972	1273 aa		28	■■■□□ 2.07
SREBF1-208	ENST00000469356	DACT2	Q5SW24	774 aa		28	■■■□□ 2.07
SREBF1-208	ENST00000469356	SPATA5	Q8NB90	893 aa		28	■■■□□ 2.07
SREBF1-208	ENST00000469356	ATP5J	P18859	108 aa		27.99	■■■□□ 2.07
SREBF1-208	ENST00000469356	MX1	P20591	662 aa		27.99	■■■□□ 2.07
SREBF1-208	ENST00000469356	SPTY2D1	Q68D10	685 aa	Predicted RBP	27.99	■■■□□ 2.07
SREBF1-208	ENST00000469356	SUGT1	Q9Y2Z0	365 aa		27.99	■■■□□ 2.07
SREBF1-208	ENST00000469356	DDN	O94850	711 aa	Predicted RBP	27.98	■■■□□ 2.07
SREBF1-208	ENST00000469356	LMOD1	P29536	600 aa	Predicted RBP	27.98	■■■□□ 2.07
SREBF1-208	ENST00000469356	MFSD14B	Q5SR56	506 aa		27.98	■■■□□ 2.07
SREBF1-208	ENST00000469356	C16orf71	Q8IYS4	520 aa	Predicted RBP	27.98	■■■□□ 2.07
SREBF1-208	ENST00000469356	DPF2	Q92785	391 aa		27.98	■■■□□ 2.07
SREBF1-208	ENST00000469356	HMG20B	Q9P0W2	317 aa		27.98	■■■□□ 2.07
SREBF1-208	ENST00000469356	IGSF3	O75054	1194 aa		27.97	■■■□□ 2.07
SREBF1-208	ENST00000469356	MCAM	P43121	646 aa		27.97	■■■□□ 2.07
SREBF1-208	ENST00000469356	HDAC9	Q9UKV0	1011 aa		27.97	■■■□□ 2.07
SREBF1-208	ENST00000469356	UTRN	P46939	3433 aa		27.97	■■■□□ 2.07
SREBF1-208	ENST00000469356	SALL1	Q9NSC2	1324 aa		27.96	■■■□□ 2.07
SREBF1-208	ENST00000469356	GLRX3	O76003	335 aa	Known RBP	27.96	■■■□□ 2.07
SREBF1-208	ENST00000469356	OGFOD1	Q8N543	542 aa		27.96	■■■□□ 2.07
SREBF1-208	ENST00000469356	IQCA1L	A6NCM1	817 aa		27.95	■■■□□ 2.07
SREBF1-208	ENST00000469356	TTF1	Q15361	905 aa	Predicted RBP	27.95	■■■□□ 2.07
SREBF1-208	ENST00000469356	JAG2	Q9Y219	1238 aa		27.95	■■■□□ 2.07
SREBF1-208	ENST00000469356	MAST3	O60307	1309 aa		27.95	■■■□□ 2.06
SREBF1-208	ENST00000469356		H7C1D1	291 aa		27.94	■■■□□ 2.06
SREBF1-208	ENST00000469356	YY1	P25490	414 aa		27.94	■■■□□ 2.06
SREBF1-208	ENST00000469356	GMPS	P49915	693 aa	Predicted RBP	27.94	■■■□□ 2.06
SREBF1-208	ENST00000469356	L3MBTL3	Q96JM7	780 aa	Predicted RBP	27.94	■■■□□ 2.06
SREBF1-208	ENST00000469356	STAP2	Q9UGK3	403 aa		27.94	■■■□□ 2.06
SREBF1-208	ENST00000469356	AOX1	Q06278	1338 aa		27.94	■■■□□ 2.06
SREBF1-208	ENST00000469356	AKAP11	Q9UKA4	1901 aa		27.93	■■■□□ 2.06
SREBF1-208	ENST00000469356	PDE1A	P54750	535 aa		27.93	■■■□□ 2.06
SREBF1-208	ENST00000469356	BOLA2	Q9H3K6	86 aa		27.93	■■■□□ 2.06
SREBF1-208	ENST00000469356	SNRK	Q9NRH2	765 aa		27.93	■■■□□ 2.06
SREBF1-208	ENST00000469356	ABCF2	Q9UG63	623 aa		27.93	■■■□□ 2.06
SREBF1-208	ENST00000469356	ZBTB12	Q9Y330	459 aa	Predicted RBP	27.93	■■■□□ 2.06
SREBF1-208	ENST00000469356	LDHB	P07195	334 aa	Known RBP	27.92	■■■□□ 2.06
SREBF1-208	ENST00000469356	USP17L8	P0C7I0	530 aa		27.92	■■■□□ 2.06
SREBF1-208	ENST00000469356	SCARF1	Q14162	830 aa		27.92	■■■□□ 2.06
SREBF1-208	ENST00000469356	ERICH6	Q7L0X2	663 aa		27.92	■■■□□ 2.06
SREBF1-208	ENST00000469356	SALL3	Q9BXA9	1300 aa		27.92	■■■□□ 2.06
SREBF1-208	ENST00000469356	ZAP70	P43403	619 aa		27.92	■■■□□ 2.06
SREBF1-208	ENST00000469356	SLF2	Q8IX21	1173 aa		27.92	■■■□□ 2.06
SREBF1-208	ENST00000469356	DNAJC2	Q99543	621 aa	Known RBP	27.92	■■■□□ 2.06
SREBF1-208	ENST00000469356	HAUS7	Q99871	368 aa		27.92	■■■□□ 2.06
SREBF1-208	ENST00000469356	LRP2BP	Q9P2M1	347 aa		27.92	■■■□□ 2.06
SREBF1-208	ENST00000469356	CNOT7	Q9UIV1	285 aa	Known RBP	27.92	■■■□□ 2.06
SREBF1-208	ENST00000469356	HACL1	Q9UJ83	578 aa		27.92	■■■□□ 2.06
SREBF1-208	ENST00000469356	OTUD7A	Q8TE49	926 aa	Predicted RBP	27.91	■■■□□ 2.06
SREBF1-208	ENST00000469356	GML	Q99445	158 aa		27.91	■■■□□ 2.06
SREBF1-208	ENST00000469356	OSBPL3	Q9H4L5	887 aa		27.91	■■■□□ 2.06
SREBF1-208	ENST00000469356	GPRC5D	Q9NZD1	345 aa		27.91	■■■□□ 2.06
SREBF1-208	ENST00000469356	SCN4A	P35499	1836 aa		27.9	■■■□□ 2.06
SREBF1-208	ENST00000469356	KIAA0825	Q8IV33	1275 aa		27.9	■■■□□ 2.06
SREBF1-208	ENST00000469356	PLEKHM2	Q8IWE5	1019 aa		27.9	■■■□□ 2.06
SREBF1-208	ENST00000469356	COL1A1	P02452	1464 aa	Predicted RBP	27.89	■■■□□ 2.06
SREBF1-208	ENST00000469356	WDR90	Q96KV7	1748 aa		27.89	■■■□□ 2.05
SREBF1-208	ENST00000469356	VEGFA	P15692	232 aa	Predicted RBP	27.89	■■■□□ 2.05
SREBF1-208	ENST00000469356	TMED8	Q6PL24	325 aa	Predicted RBP	27.89	■■■□□ 2.05
SREBF1-208	ENST00000469356	PI16	Q6UXB8	463 aa		27.89	■■■□□ 2.05
SREBF1-208	ENST00000469356	CERS5	Q8N5B7	392 aa		27.89	■■■□□ 2.05
SREBF1-208	ENST00000469356	MXD3	Q9BW11	206 aa		27.89	■■■□□ 2.05
SREBF1-208	ENST00000469356	PAG1	Q9NWQ8	432 aa		27.89	■■■□□ 2.05
SREBF1-208	ENST00000469356	TTF2	Q9UNY4	1162 aa	Known RBP	27.89	■■■□□ 2.05
SREBF1-208	ENST00000469356	ZNF646	O15015	1829 aa	Predicted RBP	27.88	■■■□□ 2.05
SREBF1-208	ENST00000469356	CYP2E1	P05181	493 aa	Predicted RBP	27.88	■■■□□ 2.05
SREBF1-208	ENST00000469356	SCNN1D	P51172	638 aa		27.88	■■■□□ 2.05
SREBF1-208	ENST00000469356	HDLBP	Q00341	1268 aa	Known RBP	27.88	■■■□□ 2.05
SREBF1-208	ENST00000469356	LRRFIP1	Q32MZ4	808 aa	Known RBP	27.88	■■■□□ 2.05
SREBF1-208	ENST00000469356	DZIP1	Q86YF9	867 aa	Known RBP	27.88	■■■□□ 2.05
SREBF1-208	ENST00000469356	MICALL2	Q8IY33	904 aa		27.88	■■■□□ 2.05
SREBF1-208	ENST00000469356	MRI	Q9BWK5	157 aa		27.88	■■■□□ 2.05
SREBF1-208	ENST00000469356	GPBP1L1	Q9HC44	474 aa	Predicted RBP	27.88	■■■□□ 2.05
SREBF1-208	ENST00000469356	RAI14	Q9P0K7	980 aa		27.88	■■■□□ 2.05
SREBF1-208	ENST00000469356		F8W031	263 aa	Predicted RBP	27.87	■■■□□ 2.05
SREBF1-208	ENST00000469356	GOLIM4	O00461	696 aa		27.87	■■■□□ 2.05
SREBF1-208	ENST00000469356	GSTO1	P78417	241 aa		27.87	■■■□□ 2.05

Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms