RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 DNAJC25Q9H1X3 360 aa15.02■□□□□ -0
USP40-208ENST00000450966 ZFYVE16Q7Z3T8 1539 aa15.02■□□□□ -0
USP40-208ENST00000450966 CETN2P41208 172 aa15.02□□□□□ -0.01
USP40-208ENST00000450966 RAB3IL1Q8TBN0 382 aa15.02□□□□□ -0.01
USP40-208ENST00000450966 NYXQ9GZU5 481 aa15.02□□□□□ -0.01
USP40-208ENST00000450966 CWC25Q9NXE8 425 aaPredicted RBP15.02□□□□□ -0.01
USP40-208ENST00000450966 TRAPPC8Q9Y2L5 1435 aa15.02□□□□□ -0.01
USP40-208ENST00000450966 CIB2O75838 187 aa15.02□□□□□ -0.01
USP40-208ENST00000450966 FBXO18Q8NFZ0 1043 aa15.02□□□□□ -0.01
USP40-208ENST00000450966 TSC22D3Q99576 134 aa15.02□□□□□ -0.01
USP40-208ENST00000450966 RASIP1Q5U651 963 aa15.01□□□□□ -0.01
USP40-208ENST00000450966 WASF1Q92558 559 aa15.01□□□□□ -0.01
USP40-208ENST00000450966 SATB2Q9UPW6 733 aa15.01□□□□□ -0.01
USP40-208ENST00000450966 CHUKO15111 745 aa15.01□□□□□ -0.01
USP40-208ENST00000450966 TMX3Q96JJ7 454 aa15.01□□□□□ -0.01
USP40-208ENST00000450966 ARHGEF10O15013 1369 aa15.01□□□□□ -0.01
USP40-208ENST00000450966 IFI16Q16666 785 aaKnown RBP15.01□□□□□ -0.01
USP40-208ENST00000450966 MYO1BO43795 1136 aa15.01□□□□□ -0.01
USP40-208ENST00000450966 MAP7D1Q3KQU3 841 aa15.01□□□□□ -0.01
USP40-208ENST00000450966 CCDC110Q8TBZ0 833 aa15.01□□□□□ -0.01
USP40-208ENST00000450966 NCKAP5LQ9HCH0 1330 aa15□□□□□ -0.01
USP40-208ENST00000450966 A0A1W2PRG0 241 aa15□□□□□ -0.01
USP40-208ENST00000450966 EFCAB8A8MWE9 144 aa15□□□□□ -0.01
USP40-208ENST00000450966 IL2RBP14784 551 aa15□□□□□ -0.01
USP40-208ENST00000450966 GJB2P29033 226 aa15□□□□□ -0.01
USP40-208ENST00000450966 CNPY2Q9Y2B0 182 aa15□□□□□ -0.01
USP40-208ENST00000450966 ZNF76P36508 570 aa15□□□□□ -0.01
USP40-208ENST00000450966 IMPACTQ9P2X3 320 aa15□□□□□ -0.01
USP40-208ENST00000450966 TADA2BQ86TJ2 420 aa15□□□□□ -0.01
USP40-208ENST00000450966 TMEM57Q8N5G2 664 aa15□□□□□ -0.01
USP40-208ENST00000450966 DTNBP1Q96EV8 351 aa15□□□□□ -0.01
USP40-208ENST00000450966 PTPRCP08575 1304 aa15□□□□□ -0.01
USP40-208ENST00000450966 TCOF1Q13428 1488 aaKnown RBP15□□□□□ -0.01
USP40-208ENST00000450966 KRT83P78385 493 aa15□□□□□ -0.01
USP40-208ENST00000450966 HDAC1Q13547 482 aaPredicted RBP15□□□□□ -0.01
USP40-208ENST00000450966 ZNF569Q5MCW4 686 aa15□□□□□ -0.01
USP40-208ENST00000450966 RASEFQ8IZ41 740 aa15□□□□□ -0.01
USP40-208ENST00000450966 ZSCAN16Q9H4T2 348 aaPredicted RBP15□□□□□ -0.01
USP40-208ENST00000450966 FAF1Q9UNN5 650 aaPredicted RBP15□□□□□ -0.01
USP40-208ENST00000450966 KRT86O43790 486 aa14.99□□□□□ -0.01
USP40-208ENST00000450966 RANBP1P43487 201 aa14.99□□□□□ -0.01
USP40-208ENST00000450966 MUM1Q2TAK8 710 aa14.99□□□□□ -0.01
USP40-208ENST00000450966 ZNF215Q9UL58 517 aaPredicted RBP14.99□□□□□ -0.01
USP40-208ENST00000450966 TNIP1Q15025 636 aa14.99□□□□□ -0.01
USP40-208ENST00000450966 CRACR2BQ8N4Y2 399 aaPredicted RBP14.99□□□□□ -0.01
USP40-208ENST00000450966 AOPEPQ8N6M6 819 aa14.99□□□□□ -0.01
USP40-208ENST00000450966 BCAS4Q8TDM0 211 aa14.99□□□□□ -0.01
USP40-208ENST00000450966 EHMT1Q9H9B1 1298 aa14.99□□□□□ -0.01
USP40-208ENST00000450966 PPIP5K1Q6PFW1 1433 aa14.99□□□□□ -0.01
USP40-208ENST00000450966 RAB3IPQ96QF0 476 aaPredicted RBP14.99□□□□□ -0.01
USP40-208ENST00000450966 CCDC77Q9BR77 488 aa14.99□□□□□ -0.01
USP40-208ENST00000450966 HDAC9Q9UKV0 1011 aa14.99□□□□□ -0.01
USP40-208ENST00000450966 HMGB1P1B2RPK0 211 aaPredicted RBP14.99□□□□□ -0.01
USP40-208ENST00000450966 ZBTB16Q05516 673 aa14.99□□□□□ -0.01
USP40-208ENST00000450966 CNNM3Q8NE01 707 aa14.99□□□□□ -0.01
USP40-208ENST00000450966 MPHOSPH6Q99547 160 aaKnown RBP14.99□□□□□ -0.01
USP40-208ENST00000450966 GSTO1P78417 241 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 MAP3K12Q12852 859 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 HSP90AA5PQ58FG0 334 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 KIF1BPQ96EK5 621 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 STAG1Q8WVM7 1258 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 ABCA5Q8WWZ7 1642 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 GOLGA8KD6RF30 607 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 ARHGAP24Q8N264 748 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.98□□□□□ -0.01
USP40-208ENST00000450966 DACT1Q9NYF0 836 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 TRIM21P19474 475 aaKnown RBP14.98□□□□□ -0.01
USP40-208ENST00000450966 GNGT1P63211 74 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 ISM2Q6H9L7 571 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 RUFY4Q6ZNE9 571 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 IQCA1Q86XH1 822 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 AIDAQ96BJ3 306 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 LRRC45Q96CN5 670 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 CAPS2Q9BXY5 557 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 MAGI2Q86UL8 1455 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 RPSAP08865 295 aaKnown RBP14.98□□□□□ -0.01
USP40-208ENST00000450966 ZNF75DP51815 510 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 TRAF1Q13077 416 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 DIXDC1Q155Q3 683 aa14.98□□□□□ -0.01
USP40-208ENST00000450966 DDX41Q9UJV9 622 aaKnown RBP14.98□□□□□ -0.01
USP40-208ENST00000450966 FGFR1OPO95684 399 aaKnown RBP14.97□□□□□ -0.01
USP40-208ENST00000450966 STK32BQ9NY57 414 aa14.97□□□□□ -0.01
USP40-208ENST00000450966 RASAL2Q9UJF2 1139 aa14.97□□□□□ -0.01
USP40-208ENST00000450966 IL16Q14005 1332 aa14.97□□□□□ -0.01
USP40-208ENST00000450966 IGHDP01880 384 aa14.97□□□□□ -0.01
USP40-208ENST00000450966 TTF1Q15361 905 aaPredicted RBP14.97□□□□□ -0.01
USP40-208ENST00000450966 SELENOOQ9BVL4 669 aa14.97□□□□□ -0.01
USP40-208ENST00000450966 ATP7AQ04656 1500 aa14.97□□□□□ -0.01
USP40-208ENST00000450966 PPP1R12AO14974 1030 aaPredicted RBP14.97□□□□□ -0.01
USP40-208ENST00000450966 PSMC4P43686 418 aa14.97□□□□□ -0.01
USP40-208ENST00000450966 ERCC6LQ2NKX8 1250 aa14.97□□□□□ -0.01
USP40-208ENST00000450966 KANK3Q6NY19 840 aa14.97□□□□□ -0.01
USP40-208ENST00000450966 ZGPATQ8N5A5 531 aaKnown RBP14.97□□□□□ -0.01
USP40-208ENST00000450966 KIAA1524Q8TCG1 905 aa14.97□□□□□ -0.01
USP40-208ENST00000450966 CROCCP2Q86T23 111 aa14.97□□□□□ -0.01
USP40-208ENST00000450966 PDCD7Q8N8D1 485 aaKnown RBP14.97□□□□□ -0.01
USP40-208ENST00000450966 THEGQ9P2T0 379 aa14.97□□□□□ -0.01
USP40-208ENST00000450966 RALGAPBQ86X10 1494 aa14.97□□□□□ -0.01
USP40-208ENST00000450966 VIMP08670 466 aaKnown RBP14.96□□□□□ -0.01
USP40-208ENST00000450966 CCDC152Q4G0S7 254 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms