RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 CTNNA3Q9UI47 895 aa14.83□□□□□ -0.04
SHMT1-205ENST00000395684 TMEM94Q12767 1356 aa14.82□□□□□ -0.04
SHMT1-205ENST00000395684 POLR3DP05423 398 aaPredicted RBP14.82□□□□□ -0.04
SHMT1-205ENST00000395684 PTPN14Q15678 1187 aa14.82□□□□□ -0.04
SHMT1-205ENST00000395684 FEZ1Q99689 392 aa14.82□□□□□ -0.04
SHMT1-205ENST00000395684 MST1RQ04912 1400 aa14.82□□□□□ -0.04
SHMT1-205ENST00000395684 NEDD4P46934 1319 aa14.82□□□□□ -0.04
SHMT1-205ENST00000395684 KDM4FA0A1W2PPD8 638 aa14.82□□□□□ -0.04
SHMT1-205ENST00000395684 A0A1W2PQ27 194 aa14.82□□□□□ -0.04
SHMT1-205ENST00000395684 A0A1W2PQ64 194 aa14.82□□□□□ -0.04
SHMT1-205ENST00000395684 A0A1W2PQD8 194 aa14.82□□□□□ -0.04
SHMT1-205ENST00000395684 HAND2P61296 217 aa14.82□□□□□ -0.04
SHMT1-205ENST00000395684 FKBP4Q02790 459 aaKnown RBP eCLIP14.82□□□□□ -0.04
SHMT1-205ENST00000395684 GJB4Q9NTQ9 266 aa14.82□□□□□ -0.04
SHMT1-205ENST00000395684 DPCR1Q3MIW9 517 aa14.81□□□□□ -0.04
SHMT1-205ENST00000395684 PROSER2Q86WR7 435 aaPredicted RBP14.81□□□□□ -0.04
SHMT1-205ENST00000395684 CCAR2Q8N163 923 aaKnown RBP14.81□□□□□ -0.04
SHMT1-205ENST00000395684 NAT10Q9H0A0 1025 aaKnown RBP14.81□□□□□ -0.04
SHMT1-205ENST00000395684 KIAA1468Q9P260 1216 aa14.81□□□□□ -0.04
SHMT1-205ENST00000395684 GTPBP4Q9BZE4 634 aaKnown RBP14.81□□□□□ -0.04
SHMT1-205ENST00000395684 GLI3P10071 1580 aa14.81□□□□□ -0.04
SHMT1-205ENST00000395684 A1BGP04217 495 aa14.8□□□□□ -0.04
SHMT1-205ENST00000395684 ZBTB3Q9H5J0 574 aa14.8□□□□□ -0.04
SHMT1-205ENST00000395684 ZNF215Q9UL58 517 aaPredicted RBP14.8□□□□□ -0.04
SHMT1-205ENST00000395684 HPS5Q9UPZ3 1129 aa14.8□□□□□ -0.04
SHMT1-205ENST00000395684 ABCC6O95255 1503 aa14.8□□□□□ -0.04
SHMT1-205ENST00000395684 FGAP02671 866 aa14.8□□□□□ -0.04
SHMT1-205ENST00000395684 STK38Q15208 465 aa14.8□□□□□ -0.04
SHMT1-205ENST00000395684 RAB11FIP4Q86YS3 637 aa14.8□□□□□ -0.04
SHMT1-205ENST00000395684 FBXO18Q8NFZ0 1043 aa14.8□□□□□ -0.04
SHMT1-205ENST00000395684 C8orf76Q96K31 380 aa14.8□□□□□ -0.04
SHMT1-205ENST00000395684 OGFRQ9NZT2 677 aa14.8□□□□□ -0.04
SHMT1-205ENST00000395684 SF3A1Q15459 793 aaKnown RBP14.79□□□□□ -0.04
SHMT1-205ENST00000395684 OSBPL5Q9H0X9 879 aaPredicted RBP14.79□□□□□ -0.04
SHMT1-205ENST00000395684 CGNQ9P2M7 1197 aaKnown RBP14.79□□□□□ -0.04
SHMT1-205ENST00000395684 CIAO1O76071 339 aa14.79□□□□□ -0.04
SHMT1-205ENST00000395684 ADORA1P30542 326 aa14.79□□□□□ -0.04
SHMT1-205ENST00000395684 CHMP4CQ96CF2 233 aa14.79□□□□□ -0.04
SHMT1-205ENST00000395684 KCND1Q9NSA2 647 aa14.79□□□□□ -0.04
SHMT1-205ENST00000395684 POLR3EQ9NVU0 708 aa14.79□□□□□ -0.04
SHMT1-205ENST00000395684 ALS2Q96Q42 1657 aa14.79□□□□□ -0.04
SHMT1-205ENST00000395684 KLF18A0A0U1RQI7 1052 aa14.79□□□□□ -0.04
SHMT1-205ENST00000395684 KIF28PB7ZC32 967 aa14.79□□□□□ -0.04
SHMT1-205ENST00000395684 SPTLC2O15270 562 aa14.79□□□□□ -0.04
SHMT1-205ENST00000395684 PRC1O43663 620 aa14.79□□□□□ -0.04
SHMT1-205ENST00000395684 ANTXR2P58335 489 aa14.79□□□□□ -0.04
SHMT1-205ENST00000395684 WASHC4Q2M389 1173 aa14.79□□□□□ -0.04
SHMT1-205ENST00000395684 MYSM1Q5VVJ2 828 aa14.79□□□□□ -0.04
SHMT1-205ENST00000395684 MB21D2Q8IYB1 491 aaPredicted RBP14.79□□□□□ -0.04
SHMT1-205ENST00000395684 CCDC191Q8NCU4 936 aa14.79□□□□□ -0.04
SHMT1-205ENST00000395684 KCNG4Q8TDN1 519 aa14.79□□□□□ -0.04
SHMT1-205ENST00000395684 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.79□□□□□ -0.04
SHMT1-205ENST00000395684 XPO4Q9C0E2 1151 aaKnown RBP14.79□□□□□ -0.04
SHMT1-205ENST00000395684 C19orf44Q9H6X5 657 aa14.79□□□□□ -0.04
SHMT1-205ENST00000395684 ORC3Q9UBD5 711 aaPredicted RBP14.79□□□□□ -0.04
SHMT1-205ENST00000395684 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.79□□□□□ -0.04
SHMT1-205ENST00000395684 V9GYY5 206 aaPredicted RBP14.79□□□□□ -0.04
SHMT1-205ENST00000395684 BIN1O00499 593 aa14.78□□□□□ -0.04
SHMT1-205ENST00000395684 YEATS4O95619 227 aa14.78□□□□□ -0.04
SHMT1-205ENST00000395684 GSDMDP57764 484 aa14.78□□□□□ -0.04
SHMT1-205ENST00000395684 SCARF1Q14162 830 aa14.78□□□□□ -0.04
SHMT1-205ENST00000395684 IMMTQ16891 758 aaKnown RBP14.78□□□□□ -0.04
SHMT1-205ENST00000395684 HSP90AB3PQ58FF7 597 aa14.78□□□□□ -0.04
SHMT1-205ENST00000395684 PUS7LQ9H0K6 701 aaKnown RBP14.78□□□□□ -0.04
SHMT1-205ENST00000395684 ATG3Q9NT62 314 aa14.78□□□□□ -0.04
SHMT1-205ENST00000395684 CEP126Q9P2H0 1117 aa14.78□□□□□ -0.04
SHMT1-205ENST00000395684 DDX41Q9UJV9 622 aaKnown RBP14.78□□□□□ -0.04
SHMT1-205ENST00000395684 GOLGA8BA8MQT2 603 aa14.78□□□□□ -0.04
SHMT1-205ENST00000395684 IGSF3O75054 1194 aa14.78□□□□□ -0.04
SHMT1-205ENST00000395684 ZNF202O95125 648 aa14.78□□□□□ -0.04
SHMT1-205ENST00000395684 BPIFA3Q9BQP9 254 aa14.78□□□□□ -0.04
SHMT1-205ENST00000395684 IFNKQ9P0W0 207 aa14.78□□□□□ -0.04
SHMT1-205ENST00000395684 ADAMTSL3P82987 1691 aa14.77□□□□□ -0.04
SHMT1-205ENST00000395684 COL18A1P39060 1754 aa14.77□□□□□ -0.04
SHMT1-205ENST00000395684 AXDND1Q5T1B0 1012 aaPredicted RBP14.77□□□□□ -0.04
SHMT1-205ENST00000395684 E4F1Q66K89 784 aaPredicted RBP14.77□□□□□ -0.04
SHMT1-205ENST00000395684 ARMCX5Q6P1M9 558 aa14.77□□□□□ -0.04
SHMT1-205ENST00000395684 XAGE2Q96GT9 111 aa14.77□□□□□ -0.04
SHMT1-205ENST00000395684 IMPACTQ9P2X3 320 aa14.77□□□□□ -0.04
SHMT1-205ENST00000395684 ZNF142P52746 1687 aaPredicted RBP14.77□□□□□ -0.05
SHMT1-205ENST00000395684 HSPA2P54652 639 aa14.77□□□□□ -0.05
SHMT1-205ENST00000395684 NCAPHQ15003 741 aa14.77□□□□□ -0.05
SHMT1-205ENST00000395684 CCDC158Q5M9N0 1113 aa14.77□□□□□ -0.05
SHMT1-205ENST00000395684 NWD2Q9ULI1 1742 aa14.76□□□□□ -0.05
SHMT1-205ENST00000395684 DHX16O60231 1041 aaKnown RBP14.76□□□□□ -0.05
SHMT1-205ENST00000395684 SMC2O95347 1197 aa14.76□□□□□ -0.05
SHMT1-205ENST00000395684 SLC3A2P08195 630 aaKnown RBP14.76□□□□□ -0.05
SHMT1-205ENST00000395684 KMT5BQ4FZB7 885 aa14.76□□□□□ -0.05
SHMT1-205ENST00000395684 TTC39AQ5SRH9 613 aa14.76□□□□□ -0.05
SHMT1-205ENST00000395684 PI16Q6UXB8 463 aa14.76□□□□□ -0.05
SHMT1-205ENST00000395684 KIF18AQ8NI77 898 aa14.76□□□□□ -0.05
SHMT1-205ENST00000395684 KIF1AQ12756 1690 aa14.76□□□□□ -0.05
SHMT1-205ENST00000395684 TJP1Q07157 1748 aa14.76□□□□□ -0.05
SHMT1-205ENST00000395684 WDHD1O75717 1129 aaPredicted RBP14.76□□□□□ -0.05
SHMT1-205ENST00000395684 ZAP70P43403 619 aa14.76□□□□□ -0.05
SHMT1-205ENST00000395684 KIF23Q02241 960 aaPredicted RBP14.76□□□□□ -0.05
SHMT1-205ENST00000395684 ZRSR1Q15695 479 aaKnown RBP14.76□□□□□ -0.05
SHMT1-205ENST00000395684 GORABQ5T7V8 394 aa14.76□□□□□ -0.05
SHMT1-205ENST00000395684 TMC6Q7Z403 805 aa14.76□□□□□ -0.05
SHMT1-205ENST00000395684 BRAPQ7Z569 592 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms