RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 RAB3GAP1Q15042 981 aa21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 SLC9C2Q5TAH2 1124 aa21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 PRPF40BQ6NWY9 871 aaKnown RBP21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 PI16Q6UXB8 463 aa21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 FBXO33Q7Z6M2 555 aa21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 SLC16A10Q8TF71 515 aa21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 PALD1Q9ULE6 856 aa21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 SNX14Q9Y5W7 946 aa21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 MYH13Q9UKX3 1938 aa21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 MAST3O60307 1309 aa21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 SNAP23O00161 211 aa21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 GYG1P46976 350 aa21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 CREB3L3Q68CJ9 461 aa21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 FAM84BQ96KN1 310 aaPredicted RBP21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 PIH1D3Q9NQM4 214 aaKnown RBP21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 CTNNA3Q9UI47 895 aa21.73■■□□□ 1.07
CCDC88C-203ENST00000389856 C15orf52Q6ZUT6 534 aaKnown RBP21.72■■□□□ 1.07
CCDC88C-203ENST00000389856 MASTLQ96GX5 879 aa21.72■■□□□ 1.07
CCDC88C-203ENST00000389856 LRRC37AA6NMS7 1700 aa21.71■■□□□ 1.07
CCDC88C-203ENST00000389856 PPEF1O14829 653 aaPredicted RBP21.71■■□□□ 1.07
CCDC88C-203ENST00000389856 SRGNP10124 158 aa21.71■■□□□ 1.07
CCDC88C-203ENST00000389856 MSL1Q68DK7 614 aa21.71■■□□□ 1.07
CCDC88C-203ENST00000389856 ZNF804AQ7Z570 1209 aa21.71■■□□□ 1.07
CCDC88C-203ENST00000389856 SP8Q8IXZ3 490 aa21.71■■□□□ 1.07
CCDC88C-203ENST00000389856 CWC22Q9HCG8 908 aaKnown RBP21.71■■□□□ 1.07
CCDC88C-203ENST00000389856 LRP2BPQ9P2M1 347 aa21.71■■□□□ 1.07
CCDC88C-203ENST00000389856 GGA1Q9UJY5 639 aa21.71■■□□□ 1.07
CCDC88C-203ENST00000389856 PDE6AP16499 860 aa21.7■■□□□ 1.06
CCDC88C-203ENST00000389856 CLEC17AQ6ZS10 378 aa21.7■■□□□ 1.06
CCDC88C-203ENST00000389856 SEC62Q99442 399 aaKnown RBP21.7■■□□□ 1.06
CCDC88C-203ENST00000389856 PODXL2Q9NZ53 605 aa21.7■■□□□ 1.06
CCDC88C-203ENST00000389856 SLC27A2O14975 620 aa21.69■■□□□ 1.06
CCDC88C-203ENST00000389856 TSGA10IPQ3SY00 556 aa21.69■■□□□ 1.06
CCDC88C-203ENST00000389856 L1TD1Q5T7N2 865 aaKnown RBP21.69■■□□□ 1.06
CCDC88C-203ENST00000389856 DEFB132Q7Z7B7 95 aa21.69■■□□□ 1.06
CCDC88C-203ENST00000389856 ZGPATQ8N5A5 531 aaKnown RBP21.69■■□□□ 1.06
CCDC88C-203ENST00000389856 H0YIN7 160 aa21.69■■□□□ 1.06
CCDC88C-203ENST00000389856 SKOR2Q2VWA4 1001 aaPredicted RBP21.69■■□□□ 1.06
CCDC88C-203ENST00000389856 CCDC129Q6ZRS4 1044 aa21.69■■□□□ 1.06
CCDC88C-203ENST00000389856 OSBP2Q969R2 916 aa21.69■■□□□ 1.06
CCDC88C-203ENST00000389856 NSFL1CQ9UNZ2 370 aaKnown RBP21.69■■□□□ 1.06
CCDC88C-203ENST00000389856 ATP6V0A2Q9Y487 856 aa21.69■■□□□ 1.06
CCDC88C-203ENST00000389856 CYP46A1Q9Y6A2 500 aa21.69■■□□□ 1.06
CCDC88C-203ENST00000389856 DUOX1Q9NRD9 1551 aa21.68■■□□□ 1.06
CCDC88C-203ENST00000389856 ZNF532Q9HCE3 1301 aa21.68■■□□□ 1.06
CCDC88C-203ENST00000389856 CD2BP2O95400 341 aaKnown RBP21.68■■□□□ 1.06
CCDC88C-203ENST00000389856 NUCB2P80303 420 aa21.68■■□□□ 1.06
CCDC88C-203ENST00000389856 SPTY2D1Q68D10 685 aaPredicted RBP21.68■■□□□ 1.06
CCDC88C-203ENST00000389856 STYK1Q6J9G0 422 aa21.68■■□□□ 1.06
CCDC88C-203ENST00000389856 M0R2C6 588 aa21.67■■□□□ 1.06
CCDC88C-203ENST00000389856 UFL1O94874 794 aa21.67■■□□□ 1.06
CCDC88C-203ENST00000389856 HSPD1P10809 573 aaKnown RBP21.67■■□□□ 1.06
CCDC88C-203ENST00000389856 GPSM2P81274 684 aa21.67■■□□□ 1.06
CCDC88C-203ENST00000389856 AIDAQ96BJ3 306 aa21.67■■□□□ 1.06
CCDC88C-203ENST00000389856 JAKMIP1Q96N16 626 aaKnown RBP21.67■■□□□ 1.06
CCDC88C-203ENST00000389856 GPAA1O43292 621 aa21.66■■□□□ 1.06
CCDC88C-203ENST00000389856 RASEFQ8IZ41 740 aa21.66■■□□□ 1.06
CCDC88C-203ENST00000389856 MAGEB6Q8N7X4 407 aa21.66■■□□□ 1.06
CCDC88C-203ENST00000389856 TNPO1Q92973 898 aaKnown RBP21.66■■□□□ 1.06
CCDC88C-203ENST00000389856 ISY1Q9ULR0 285 aaKnown RBP21.66■■□□□ 1.06
CCDC88C-203ENST00000389856 HMGB1P09429 215 aaKnown RBP21.66■■□□□ 1.06
CCDC88C-203ENST00000389856 GNAT2P19087 354 aa21.66■■□□□ 1.06
CCDC88C-203ENST00000389856 CASTP20810 708 aaKnown RBP21.66■■□□□ 1.06
CCDC88C-203ENST00000389856 C2CD5Q86YS7 1000 aa21.66■■□□□ 1.06
CCDC88C-203ENST00000389856 ZSWIM6Q9HCJ5 1215 aa21.66■■□□□ 1.06
CCDC88C-203ENST00000389856 RAI14Q9P0K7 980 aa21.66■■□□□ 1.06
CCDC88C-203ENST00000389856 ABCF2Q9UG63 623 aa21.66■■□□□ 1.06
CCDC88C-203ENST00000389856 WWC3Q9ULE0 1092 aa21.66■■□□□ 1.06
CCDC88C-203ENST00000389856 COL11A2P13942 1736 aaPredicted RBP21.65■■□□□ 1.06
CCDC88C-203ENST00000389856 MYO5AQ9Y4I1 1855 aaKnown RBP21.65■■□□□ 1.06
CCDC88C-203ENST00000389856 VPS53Q5VIR6 699 aa21.65■■□□□ 1.06
CCDC88C-203ENST00000389856 WDR66Q8TBY9 1149 aa21.65■■□□□ 1.06
CCDC88C-203ENST00000389856 CNKSR1Q969H4 720 aa21.65■■□□□ 1.06
CCDC88C-203ENST00000389856 TCRBV5S4A2TA0A5A2 114 aa21.64■■□□□ 1.05
CCDC88C-203ENST00000389856 TRAK2O60296 914 aa21.64■■□□□ 1.05
CCDC88C-203ENST00000389856 CHGBP05060 677 aa21.64■■□□□ 1.05
CCDC88C-203ENST00000389856 ANKRD1Q15327 319 aa21.64■■□□□ 1.05
CCDC88C-203ENST00000389856 IMMTQ16891 758 aaKnown RBP21.64■■□□□ 1.05
CCDC88C-203ENST00000389856 BLOC1S2Q6QNY1 142 aa21.64■■□□□ 1.05
CCDC88C-203ENST00000389856 UPF3BQ9BZI7 483 aaKnown RBP21.64■■□□□ 1.05
CCDC88C-203ENST00000389856 PUS7LQ9H0K6 701 aaKnown RBP21.64■■□□□ 1.05
CCDC88C-203ENST00000389856 IQSEC3Q9UPP2 1182 aaPredicted RBP21.64■■□□□ 1.05
CCDC88C-203ENST00000389856 IRS2Q9Y4H2 1338 aa21.64■■□□□ 1.05
CCDC88C-203ENST00000389856 RPAP1Q9BWH6 1393 aaPredicted RBP21.64■■□□□ 1.05
CCDC88C-203ENST00000389856 MAST2Q6P0Q8 1798 aa21.64■■□□□ 1.05
CCDC88C-203ENST00000389856 GOLGA6L22H0YM25 854 aa21.63■■□□□ 1.05
CCDC88C-203ENST00000389856 RUFY3Q7L099 469 aa21.63■■□□□ 1.05
CCDC88C-203ENST00000389856 CCDC88AQ3V6T2 1871 aa21.62■■□□□ 1.05
CCDC88C-203ENST00000389856 ZNF622Q969S3 477 aaKnown RBP eCLIP21.62■■□□□ 1.05
CCDC88C-203ENST00000389856 PDRG1Q9NUG6 133 aa21.62■■□□□ 1.05
CCDC88C-203ENST00000389856 SALL1Q9NSC2 1324 aa21.62■■□□□ 1.05
CCDC88C-203ENST00000389856 C6orf229H3BNL8 230 aa21.62■■□□□ 1.05
CCDC88C-203ENST00000389856 KLRK1P26718 216 aa21.62■■□□□ 1.05
CCDC88C-203ENST00000389856 MPNDQ8N594 471 aa21.62■■□□□ 1.05
CCDC88C-203ENST00000389856 TDRD7Q8NHU6 1098 aaKnown RBP21.62■■□□□ 1.05
CCDC88C-203ENST00000389856 TBC1D16Q8TBP0 767 aa21.62■■□□□ 1.05
CCDC88C-203ENST00000389856 EYA3Q99504 573 aa21.62■■□□□ 1.05
CCDC88C-203ENST00000389856 NACAP1Q9BZK3 213 aa21.62■■□□□ 1.05
CCDC88C-203ENST00000389856 ZMYM6O95789 1325 aa21.62■■□□□ 1.05
CCDC88C-203ENST00000389856 COL1A1P02452 1464 aaPredicted RBP21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms