RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 KIF24Q5T7B8 1368 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 PLEKHM2Q8IWE5 1019 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 LMNTD2Q8IXW0 634 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 USH1CQ9Y6N9 552 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 CREB3L3Q68CJ9 461 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 IFNL2Q8IZJ0 200 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 CACNA2D3Q8IZS8 1091 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 GPR161Q8N6U8 529 aaKnown RBP10.81□□□□□ -0.68
SNX1-202ENST00000380285 MSANTD4Q8NCY6 345 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 BABAM1Q9NWV8 329 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 AFMP43652 599 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 KRBA2Q6ZNG9 492 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 IFT20Q8IY31 132 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 TCOF1Q13428 1488 aaKnown RBP10.81□□□□□ -0.68
SNX1-202ENST00000380285 IBSPP21815 317 aaPredicted RBP10.81□□□□□ -0.68
SNX1-202ENST00000380285 CHMP4BP1P59074 171 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 PPFIA1Q13136 1202 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 ISM2Q6H9L7 571 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 GBP1P32455 592 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 ASIC1P78348 528 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 MEIS3Q99687 375 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 STK24Q9Y6E0 443 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 KDM5BQ9UGL1 1544 aa10.81□□□□□ -0.68
SNX1-202ENST00000380285 ARHGAP6O43182 974 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 GRIN2AQ12879 1464 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 CALCOCO2Q13137 446 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 PAXIP1Q6ZW49 1069 aaPredicted RBP10.8□□□□□ -0.68
SNX1-202ENST00000380285 UBE3BQ7Z3V4 1068 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 ACTN4O43707 911 aaKnown RBP10.8□□□□□ -0.68
SNX1-202ENST00000380285 CCDC14Q49A88 953 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 CEP85Q6P2H3 762 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 KSR2Q6VAB6 950 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 ANKRD13DQ6ZTN6 518 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 SHANK2Q9UPX8 1470 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 RILPL1Q5EBL4 403 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 NKIRAS1Q9NYS0 192 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 GUCA1BQ9UMX6 200 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 BRD2P25440 801 aaKnown RBP10.8□□□□□ -0.68
SNX1-202ENST00000380285 RPL13P26373 211 aaKnown RBP10.8□□□□□ -0.68
SNX1-202ENST00000380285 GNA11P29992 359 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 CLSTN2Q9H4D0 955 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 ADGRF5Q8IZF2 1346 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 CHMLP26374 656 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 SF3B2Q13435 895 aaKnown RBP10.8□□□□□ -0.68
SNX1-202ENST00000380285 HELLSQ9NRZ9 838 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 KIF3CO14782 793 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 C10orf67Q8IYJ2 551 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 C6orf50Q9HD87 102 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 SSH2Q76I76 1423 aa10.8□□□□□ -0.68
SNX1-202ENST00000380285 INPP5BP32019 993 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 CCDC152Q4G0S7 254 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 PAG1Q9NWQ8 432 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 STMN2Q93045 179 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 PLCB1Q9NQ66 1216 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 ZNF500O60304 480 aaPredicted RBP10.79□□□□□ -0.68
SNX1-202ENST00000380285 CCDC122Q5T0U0 273 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 TMTC1Q8IUR5 882 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 ZEB2O60315 1214 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 INTS8Q75QN2 995 aaKnown RBP10.79□□□□□ -0.68
SNX1-202ENST00000380285 TAOK1Q7L7X3 1001 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 SCLT1Q96NL6 688 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 LARP6Q9BRS8 491 aaKnown RBP10.79□□□□□ -0.68
SNX1-202ENST00000380285 SETSIPP0DME0 302 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 ZNF75DP51815 510 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 MTMR3Q13615 1198 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 ARHGAP24Q8N264 748 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 MLKLQ8NB16 471 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 SELENOSQ9BQE4 189 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 UTP14AQ9BVJ6 771 aaKnown RBP10.79□□□□□ -0.68
SNX1-202ENST00000380285 GOLGA6CA6NDK9 693 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 PABPN1LA6NDY0 278 aaKnown RBP10.79□□□□□ -0.68
SNX1-202ENST00000380285 CIB2O75838 187 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 GOLGA6DP0CG33 693 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 PLCD1P51178 756 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 BRD3Q15059 726 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 ERCC6LQ2NKX8 1250 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 MMRN2Q9H8L6 949 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 GOLGA6AQ9NYA3 693 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 PPP2R5BQ15173 497 aa10.79□□□□□ -0.68
SNX1-202ENST00000380285 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.79□□□□□ -0.68
SNX1-202ENST00000380285 GPATCH8Q9UKJ3 1502 aaKnown RBP10.78□□□□□ -0.68
SNX1-202ENST00000380285 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.78□□□□□ -0.688e-11■□□□□ 8.9
SNX1-202ENST00000380285 HAND2P61296 217 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 TSNAXIP1Q2TAA8 658 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 MPRIPQ6WCQ1 1025 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 FCHSD1Q86WN1 690 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 CCDC144CPQ8IYA2 1237 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 CCDC85AQ96PX6 553 aaPredicted RBP10.78□□□□□ -0.68
SNX1-202ENST00000380285 IMPG2Q9BZV3 1241 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 LZTFL1Q9NQ48 299 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.78□□□□□ -0.68
SNX1-202ENST00000380285 COL17A1Q9UMD9 1497 aaPredicted RBP10.78□□□□□ -0.68
SNX1-202ENST00000380285 PTPDC1A2A3K4 754 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 KRT79Q5XKE5 535 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 CABP5Q9NP86 173 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 NDUFAB1O14561 156 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 RNF113AO15541 343 aaKnown RBP10.78□□□□□ -0.68
SNX1-202ENST00000380285 SEL1L2Q5TEA6 688 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 DTHD1Q6ZMT9 781 aa10.78□□□□□ -0.68
SNX1-202ENST00000380285 HS2ST1Q7LGA3 356 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms