RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 HAND2P61296 217 aa21.49■■□□□ 1.03
CCDC3-201ENST00000378825 KDM6AO15550 1401 aaPredicted RBP21.49■■□□□ 1.03
CCDC3-201ENST00000378825 EPC1Q9H2F5 836 aa21.49■■□□□ 1.03
CCDC3-201ENST00000378825 HSPD1P10809 573 aaKnown RBP21.48■■□□□ 1.03
CCDC3-201ENST00000378825 LINC00301Q8NCQ3 95 aa21.48■■□□□ 1.03
CCDC3-201ENST00000378825 NCAPHQ15003 741 aa21.48■■□□□ 1.03
CCDC3-201ENST00000378825 DPF2Q92785 391 aa21.48■■□□□ 1.03
CCDC3-201ENST00000378825 L2HGDHQ9H9P8 463 aa21.48■■□□□ 1.03
CCDC3-201ENST00000378825 FHOD1Q9Y613 1164 aa21.48■■□□□ 1.03
CCDC3-201ENST00000378825 H2AFXP16104 143 aaPredicted RBP21.47■■□□□ 1.03
CCDC3-201ENST00000378825 STK38Q15208 465 aa21.47■■□□□ 1.03
CCDC3-201ENST00000378825 SF3A1Q15459 793 aaKnown RBP21.47■■□□□ 1.03
CCDC3-201ENST00000378825 SFPQP23246 707 aaKnown RBP eCLIP21.47■■□□□ 1.03
CCDC3-201ENST00000378825 GSDMDP57764 484 aa21.47■■□□□ 1.03
CCDC3-201ENST00000378825 ARHGAP29Q52LW3 1261 aa21.47■■□□□ 1.03
CCDC3-201ENST00000378825 CCDC93Q567U6 631 aa21.47■■□□□ 1.03
CCDC3-201ENST00000378825 HSP90AB3PQ58FF7 597 aa21.47■■□□□ 1.03
CCDC3-201ENST00000378825 ADALQ6DHV7 355 aa21.47■■□□□ 1.03
CCDC3-201ENST00000378825 ANKRD13DQ6ZTN6 518 aa21.47■■□□□ 1.03
CCDC3-201ENST00000378825 NAT10Q9H0A0 1025 aaKnown RBP21.47■■□□□ 1.03
CCDC3-201ENST00000378825 MEGF6O75095 1541 aa21.46■■□□□ 1.03
CCDC3-201ENST00000378825 KIF28PB7ZC32 967 aa21.46■■□□□ 1.03
CCDC3-201ENST00000378825 LMBR1LQ6UX01 489 aa21.46■■□□□ 1.03
CCDC3-201ENST00000378825 AGXT2Q9BYV1 514 aa21.46■■□□□ 1.03
CCDC3-201ENST00000378825 DNAI1Q9UI46 699 aa21.46■■□□□ 1.03
CCDC3-201ENST00000378825 TRPM3Q9HCF6 1732 aaPredicted RBP21.46■■□□□ 1.03
CCDC3-201ENST00000378825 ADAMTSL3P82987 1691 aa21.46■■□□□ 1.03
CCDC3-201ENST00000378825 A0A087WZG4 1122 aa21.46■■□□□ 1.03
CCDC3-201ENST00000378825 CYP27B1O15528 508 aa21.46■■□□□ 1.03
CCDC3-201ENST00000378825 MARCKSP29966 332 aaPredicted RBP21.45■■□□□ 1.02
CCDC3-201ENST00000378825 HOMER1Q86YM7 354 aa21.45■■□□□ 1.02
CCDC3-201ENST00000378825 HSD3B7Q9H2F3 369 aa21.45■■□□□ 1.02
CCDC3-201ENST00000378825 PAG1Q9NWQ8 432 aa21.45■■□□□ 1.02
CCDC3-201ENST00000378825 RTEL1Q9NZ71 1219 aa21.45■■□□□ 1.02
CCDC3-201ENST00000378825 TMEM94Q12767 1356 aa21.45■■□□□ 1.02
CCDC3-201ENST00000378825 PALLDQ8WX93 1383 aa21.45■■□□□ 1.02
CCDC3-201ENST00000378825 MAST3O60307 1309 aa21.45■■□□□ 1.02
CCDC3-201ENST00000378825 TMX1Q9H3N1 280 aa21.45■■□□□ 1.02
CCDC3-201ENST00000378825 MROH7-TTC4A0A0A0MT08 1334 aa21.44■■□□□ 1.02
CCDC3-201ENST00000378825 SH3TC1Q8TE82 1336 aa21.44■■□□□ 1.02
CCDC3-201ENST00000378825 M0R2C6 588 aa21.44■■□□□ 1.02
CCDC3-201ENST00000378825 HSP90AA4PQ58FG1 418 aa21.44■■□□□ 1.02
CCDC3-201ENST00000378825 FAM177A1Q8N128 213 aaPredicted RBP21.44■■□□□ 1.02
CCDC3-201ENST00000378825 TRERF1Q96PN7 1200 aa21.44■■□□□ 1.02
CCDC3-201ENST00000378825 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.44■■□□□ 1.02
CCDC3-201ENST00000378825 SEC31AO94979 1220 aaKnown RBP21.44■■□□□ 1.02
CCDC3-201ENST00000378825 ZNF202O95125 648 aa21.44■■□□□ 1.02
CCDC3-201ENST00000378825 LRP10Q7Z4F1 713 aa21.44■■□□□ 1.02
CCDC3-201ENST00000378825 KCND1Q9NSA2 647 aa21.44■■□□□ 1.02
CCDC3-201ENST00000378825 OVOS2A0A0G2JMS6 1433 aa21.43■■□□□ 1.02
CCDC3-201ENST00000378825 SLC3A2P08195 630 aaKnown RBP21.43■■□□□ 1.02
CCDC3-201ENST00000378825 ZRSR1Q15695 479 aaKnown RBP21.43■■□□□ 1.02
CCDC3-201ENST00000378825 IFNL2Q8IZJ0 200 aa21.43■■□□□ 1.02
CCDC3-201ENST00000378825 TTC5Q8N0Z6 440 aa21.43■■□□□ 1.02
CCDC3-201ENST00000378825 ZNF594Q96JF6 807 aaPredicted RBP21.43■■□□□ 1.02
CCDC3-201ENST00000378825 AIFM3Q96NN9 605 aa21.43■■□□□ 1.02
CCDC3-201ENST00000378825 C5P01031 1676 aa21.43■■□□□ 1.02
CCDC3-201ENST00000378825 ABCC6O95255 1503 aa21.43■■□□□ 1.02
CCDC3-201ENST00000378825 HMGB1P09429 215 aaKnown RBP21.43■■□□□ 1.02
CCDC3-201ENST00000378825 PLA2G4AP47712 749 aa21.43■■□□□ 1.02
CCDC3-201ENST00000378825 WDHD1O75717 1129 aaPredicted RBP21.42■■□□□ 1.02
CCDC3-201ENST00000378825 PNMA6AP0CW24 399 aaPredicted RBP21.42■■□□□ 1.02
CCDC3-201ENST00000378825 FANCCQ00597 558 aa21.42■■□□□ 1.02
CCDC3-201ENST00000378825 ZBTB9Q96C00 473 aa21.42■■□□□ 1.02
CCDC3-201ENST00000378825 TMEM51Q9NW97 253 aa21.42■■□□□ 1.02
CCDC3-201ENST00000378825 IMPACTQ9P2X3 320 aa21.42■■□□□ 1.02
CCDC3-201ENST00000378825 TMEM232C9JQI7 657 aa21.42■■□□□ 1.02
CCDC3-201ENST00000378825 SPTLC2O15270 562 aa21.42■■□□□ 1.02
CCDC3-201ENST00000378825 DENND2AQ9ULE3 1009 aa21.42■■□□□ 1.02
CCDC3-201ENST00000378825 PFKFB1P16118 471 aa21.42■■□□□ 1.02
CCDC3-201ENST00000378825 RABL6Q3YEC7 729 aaPredicted RBP21.42■■□□□ 1.02
CCDC3-201ENST00000378825 ZMYM1Q5SVZ6 1142 aa21.42■■□□□ 1.02
CCDC3-201ENST00000378825 NKX2-3Q8TAU0 364 aa21.42■■□□□ 1.02
CCDC3-201ENST00000378825 OSBP2Q969R2 916 aa21.42■■□□□ 1.02
CCDC3-201ENST00000378825 C8orf76Q96K31 380 aa21.42■■□□□ 1.02
CCDC3-201ENST00000378825 LRRC24Q50LG9 513 aa21.41■■□□□ 1.02
CCDC3-201ENST00000378825 ATG9AQ7Z3C6 839 aa21.41■■□□□ 1.02
CCDC3-201ENST00000378825 MYSM1Q5VVJ2 828 aa21.41■■□□□ 1.02
CCDC3-201ENST00000378825 CCDC150Q8NCX0 1101 aa21.41■■□□□ 1.02
CCDC3-201ENST00000378825 ZNF274Q96GC6 653 aaPredicted RBP21.41■■□□□ 1.02
CCDC3-201ENST00000378825 NOL10Q9BSC4 688 aaKnown RBP21.41■■□□□ 1.02
CCDC3-201ENST00000378825 DSCC1Q9BVC3 393 aa21.41■■□□□ 1.02
CCDC3-201ENST00000378825 A0A1W2PQ27 194 aa21.4■■□□□ 1.02
CCDC3-201ENST00000378825 A0A1W2PQ64 194 aa21.4■■□□□ 1.02
CCDC3-201ENST00000378825 A0A1W2PQD8 194 aa21.4■■□□□ 1.02
CCDC3-201ENST00000378825 POLR3GO15318 223 aaPredicted RBP21.4■■□□□ 1.02
CCDC3-201ENST00000378825 FOXP2O15409 715 aa21.4■■□□□ 1.02
CCDC3-201ENST00000378825 AXDND1Q5T1B0 1012 aaPredicted RBP21.4■■□□□ 1.02
CCDC3-201ENST00000378825 TRIM65Q6PJ69 517 aa21.4■■□□□ 1.02
CCDC3-201ENST00000378825 PSDA5PKW4 1024 aaPredicted RBP21.4■■□□□ 1.02
CCDC3-201ENST00000378825 NLRP12P59046 1061 aa21.4■■□□□ 1.02
CCDC3-201ENST00000378825 ETF1P62495 437 aaKnown RBP21.4■■□□□ 1.02
CCDC3-201ENST00000378825 BBXQ8WY36 941 aaPredicted RBP21.4■■□□□ 1.02
CCDC3-201ENST00000378825 UTP14AQ9BVJ6 771 aaKnown RBP21.4■■□□□ 1.02
CCDC3-201ENST00000378825 ORC3Q9UBD5 711 aaPredicted RBP21.4■■□□□ 1.02
CCDC3-201ENST00000378825 HPS5Q9UPZ3 1129 aa21.4■■□□□ 1.02
CCDC3-201ENST00000378825 URI1O94763 535 aaPredicted RBP21.39■■□□□ 1.02
CCDC3-201ENST00000378825 SNRPA1P09661 255 aaKnown RBP21.39■■□□□ 1.02
CCDC3-201ENST00000378825 GTF2E1P29083 439 aaPredicted RBP21.39■■□□□ 1.02
CCDC3-201ENST00000378825 ATL3Q6DD88 541 aa21.39■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms