RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 MYH13Q9UKX3 1938 aa16.49■□□□□ 0.23
PTPRF-202ENST00000372405 UBE3CQ15386 1083 aa16.49■□□□□ 0.23
PTPRF-202ENST00000372405 LARP6Q9BRS8 491 aaKnown RBP16.49■□□□□ 0.23
PTPRF-202ENST00000372405 ANKRD2Q9GZV1 360 aa16.49■□□□□ 0.23
PTPRF-202ENST00000372405 CYP46A1Q9Y6A2 500 aa16.49■□□□□ 0.23
PTPRF-202ENST00000372405 ZNF532Q9HCE3 1301 aa16.49■□□□□ 0.23
PTPRF-202ENST00000372405 KLRG2A4D1S0 409 aaPredicted RBP16.48■□□□□ 0.23
PTPRF-202ENST00000372405 ZSCAN25Q6NSZ9 544 aa16.48■□□□□ 0.23
PTPRF-202ENST00000372405 STOX1Q6ZVD7 989 aa16.48■□□□□ 0.23
PTPRF-202ENST00000372405 FBXO33Q7Z6M2 555 aa16.48■□□□□ 0.23
PTPRF-202ENST00000372405 CAMKK2Q96RR4 588 aa16.48■□□□□ 0.23
PTPRF-202ENST00000372405 ANO8Q9HCE9 1232 aaPredicted RBP16.48■□□□□ 0.23
PTPRF-202ENST00000372405 GPAA1O43292 621 aa16.47■□□□□ 0.23
PTPRF-202ENST00000372405 EZH2Q15910 746 aaKnown RBP16.47■□□□□ 0.23
PTPRF-202ENST00000372405 TXNRD3Q86VQ6 643 aa16.47■□□□□ 0.23
PTPRF-202ENST00000372405 PDRG1Q9NUG6 133 aa16.47■□□□□ 0.23
PTPRF-202ENST00000372405 EN1Q05925 392 aaPredicted RBP16.47■□□□□ 0.23
PTPRF-202ENST00000372405 TTLL5Q6EMB2 1281 aa16.47■□□□□ 0.23
PTPRF-202ENST00000372405 NLGN1Q8N2Q7 840 aa16.47■□□□□ 0.23
PTPRF-202ENST00000372405 RPGRQ92834 1020 aaKnown RBP16.47■□□□□ 0.23
PTPRF-202ENST00000372405 PSMA5P28066 241 aa16.46■□□□□ 0.23
PTPRF-202ENST00000372405 RAB3GAP1Q15042 981 aa16.46■□□□□ 0.23
PTPRF-202ENST00000372405 CAVIN4Q5BKX8 364 aa16.46■□□□□ 0.23
PTPRF-202ENST00000372405 FLAD1Q8NFF5 587 aa16.46■□□□□ 0.23
PTPRF-202ENST00000372405 TCEANC2Q96MN5 208 aa16.46■□□□□ 0.23
PTPRF-202ENST00000372405 CACNA1SQ13698 1873 aa16.46■□□□□ 0.23
PTPRF-202ENST00000372405 LARGE1O95461 756 aa16.46■□□□□ 0.22
PTPRF-202ENST00000372405 RPS6KB1P23443 525 aa16.46■□□□□ 0.22
PTPRF-202ENST00000372405 HOXA10P31260 410 aaPredicted RBP16.46■□□□□ 0.22
PTPRF-202ENST00000372405 BLOC1S2Q6QNY1 142 aa16.46■□□□□ 0.22
PTPRF-202ENST00000372405 MAGEB6Q8N7X4 407 aa16.46■□□□□ 0.22
PTPRF-202ENST00000372405 LIMCH1Q9UPQ0 1083 aa16.46■□□□□ 0.22
PTPRF-202ENST00000372405 MAP3K12Q12852 859 aa16.45■□□□□ 0.22
PTPRF-202ENST00000372405 KRT32Q14532 448 aa16.45■□□□□ 0.22
PTPRF-202ENST00000372405 GNL3LQ9NVN8 582 aaKnown RBP16.45■□□□□ 0.22
PTPRF-202ENST00000372405 COL11A2P13942 1736 aaPredicted RBP16.45■□□□□ 0.22
PTPRF-202ENST00000372405 LRRC37AA6NMS7 1700 aa16.44■□□□□ 0.22
PTPRF-202ENST00000372405 LTBP1Q14766 1721 aa16.44■□□□□ 0.22
PTPRF-202ENST00000372405 FGAP02671 866 aa16.44■□□□□ 0.22
PTPRF-202ENST00000372405 PKP1Q13835 747 aa16.44■□□□□ 0.22
PTPRF-202ENST00000372405 INTS4Q96HW7 963 aaKnown RBP16.44■□□□□ 0.22
PTPRF-202ENST00000372405 RBM17Q96I25 401 aaKnown RBP16.44■□□□□ 0.22
PTPRF-202ENST00000372405 CWC22Q9HCG8 908 aaKnown RBP16.44■□□□□ 0.22
PTPRF-202ENST00000372405 QSER1Q2KHR3 1735 aa16.44■□□□□ 0.22
PTPRF-202ENST00000372405 MMP10P09238 476 aa16.44■□□□□ 0.22
PTPRF-202ENST00000372405 TOB2Q14106 344 aaPredicted RBP16.44■□□□□ 0.22
PTPRF-202ENST00000372405 MSL1Q68DK7 614 aa16.44■□□□□ 0.22
PTPRF-202ENST00000372405 VPS37DQ86XT2 251 aa16.44■□□□□ 0.22
PTPRF-202ENST00000372405 TNPO1Q92973 898 aaKnown RBP16.44■□□□□ 0.22
PTPRF-202ENST00000372405 NEK1Q96PY6 1258 aa16.44■□□□□ 0.22
PTPRF-202ENST00000372405 STRBPQ96SI9 672 aaKnown RBP16.44■□□□□ 0.22
PTPRF-202ENST00000372405 GPSM2P81274 684 aa16.43■□□□□ 0.22
PTPRF-202ENST00000372405 ALDH8A1Q9H2A2 487 aaPredicted RBP16.43■□□□□ 0.22
PTPRF-202ENST00000372405 ANKIB1Q9P2G1 1089 aa16.43■□□□□ 0.22
PTPRF-202ENST00000372405 DENND2AQ9ULE3 1009 aa16.43■□□□□ 0.22
PTPRF-202ENST00000372405 TPCN1Q9ULQ1 816 aa16.43■□□□□ 0.22
PTPRF-202ENST00000372405 XDHP47989 1333 aa16.42■□□□□ 0.22
PTPRF-202ENST00000372405 E7EWF7 191 aa16.42■□□□□ 0.22
PTPRF-202ENST00000372405 HIBADHP31937 336 aaKnown RBP16.42■□□□□ 0.22
PTPRF-202ENST00000372405 ST3GAL1Q11201 340 aa16.42■□□□□ 0.22
PTPRF-202ENST00000372405 SLC15A2Q16348 729 aa16.42■□□□□ 0.22
PTPRF-202ENST00000372405 ADGRA1Q86SQ6 560 aa16.42■□□□□ 0.22
PTPRF-202ENST00000372405 CRAMP1Q96RY5 1269 aa16.42■□□□□ 0.22
PTPRF-202ENST00000372405 BRIP1Q9BX63 1249 aa16.42■□□□□ 0.22
PTPRF-202ENST00000372405 LRP2BPQ9P2M1 347 aa16.42■□□□□ 0.22
PTPRF-202ENST00000372405 ME3Q16798 604 aa16.42■□□□□ 0.22
PTPRF-202ENST00000372405 ZNF384Q8TF68 577 aa16.42■□□□□ 0.22
PTPRF-202ENST00000372405 GPR101Q96P66 508 aaPredicted RBP16.42■□□□□ 0.22
PTPRF-202ENST00000372405 ABCF2Q9UG63 623 aa16.42■□□□□ 0.22
PTPRF-202ENST00000372405 LEMD3Q9Y2U8 911 aa16.42■□□□□ 0.22
PTPRF-202ENST00000372405 PDS5AQ29RF7 1337 aaKnown RBP16.41■□□□□ 0.22
PTPRF-202ENST00000372405 SEMA3EO15041 775 aa16.41■□□□□ 0.22
PTPRF-202ENST00000372405 BBOX1O75936 387 aa16.41■□□□□ 0.22
PTPRF-202ENST00000372405 HAND2P61296 217 aa16.41■□□□□ 0.22
PTPRF-202ENST00000372405 AIDAQ96BJ3 306 aa16.41■□□□□ 0.22
PTPRF-202ENST00000372405 ZDHHC9Q9Y397 364 aa16.41■□□□□ 0.22
PTPRF-202ENST00000372405 MBD4O95243 580 aa16.4■□□□□ 0.22
PTPRF-202ENST00000372405 NBPF3Q9H094 633 aa16.4■□□□□ 0.22
PTPRF-202ENST00000372405 CTNNA3Q9UI47 895 aa16.4■□□□□ 0.22
PTPRF-202ENST00000372405 ZBTB22O15209 634 aa16.4■□□□□ 0.22
PTPRF-202ENST00000372405 SRGNP10124 158 aa16.4■□□□□ 0.22
PTPRF-202ENST00000372405 LCORLQ8N3X6 602 aa16.4■□□□□ 0.22
PTPRF-202ENST00000372405 ARMT1Q9H993 441 aa16.4■□□□□ 0.22
PTPRF-202ENST00000372405 EPB41L4AQ9HCS5 686 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-202ENST00000372405 PARP3Q9Y6F1 533 aa16.4■□□□□ 0.22
PTPRF-202ENST00000372405 MCM4P33991 863 aa16.39■□□□□ 0.21
PTPRF-202ENST00000372405 EXOSC10Q01780 885 aaKnown RBP16.39■□□□□ 0.21
PTPRF-202ENST00000372405 IMMTQ16891 758 aaKnown RBP16.39■□□□□ 0.21
PTPRF-202ENST00000372405 C15orf52Q6ZUT6 534 aaKnown RBP16.39■□□□□ 0.21
PTPRF-202ENST00000372405 ZSCAN31Q96LW9 406 aaPredicted RBP16.39■□□□□ 0.21
PTPRF-202ENST00000372405 LRRC2Q9BYS8 371 aa16.39■□□□□ 0.21
PTPRF-202ENST00000372405 NSFL1CQ9UNZ2 370 aaKnown RBP16.39■□□□□ 0.21
PTPRF-202ENST00000372405 DEFB132Q7Z7B7 95 aa16.38■□□□□ 0.21
PTPRF-202ENST00000372405 MIGA1Q8NAN2 632 aa16.38■□□□□ 0.21
PTPRF-202ENST00000372405 SH2B1Q9NRF2 756 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-202ENST00000372405 RAI14Q9P0K7 980 aa16.38■□□□□ 0.21
PTPRF-202ENST00000372405 MAST2Q6P0Q8 1798 aa16.38■□□□□ 0.21
PTPRF-202ENST00000372405 CCDC88AQ3V6T2 1871 aa16.38■□□□□ 0.21
PTPRF-202ENST00000372405 PRKAB2O43741 272 aa16.38■□□□□ 0.21
PTPRF-202ENST00000372405 DTNBO60941 627 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms