RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 RUFY3Q7L099 469 aa10.44□□□□□ -0.74
VPS13A-203ENST00000360280 HAUS7Q99871 368 aa10.44□□□□□ -0.74
VPS13A-203ENST00000360280 GSTO1P78417 241 aa10.44□□□□□ -0.74
VPS13A-203ENST00000360280 GCKP35557 465 aa10.44□□□□□ -0.74
VPS13A-203ENST00000360280 FRMD4BQ9Y2L6 1034 aa10.44□□□□□ -0.74
VPS13A-203ENST00000360280 TFIP11Q9UBB9 837 aaKnown RBP10.43□□□□□ -0.74
VPS13A-203ENST00000360280 ORC3Q9UBD5 711 aaPredicted RBP10.43□□□□□ -0.74
VPS13A-203ENST00000360280 NEK1Q96PY6 1258 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 PTPN23Q9H3S7 1636 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.43□□□□□ -0.74
VPS13A-203ENST00000360280 SLFN5Q08AF3 891 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 PPANQ9NQ55 473 aaKnown RBP10.43□□□□□ -0.74
VPS13A-203ENST00000360280 C9orf84Q5VXU9 1444 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 VWA3BQ502W6 1294 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 WTAPQ15007 396 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 LRCH2Q5VUJ6 765 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 RPGRQ92834 1020 aaKnown RBP10.43□□□□□ -0.74
VPS13A-203ENST00000360280 JPH4Q96JJ6 628 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 C6orf50Q9HD87 102 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 CA8P35219 290 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 FAM160A1Q05DH4 1040 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 DACT3Q96B18 629 aaPredicted RBP10.43□□□□□ -0.74
VPS13A-203ENST00000360280 ASIC1P78348 528 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 ZNF569Q5MCW4 686 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 CCDC122Q5T0U0 273 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 CCDC117Q8IWD4 279 aaPredicted RBP10.43□□□□□ -0.74
VPS13A-203ENST00000360280 ERO1AQ96HE7 468 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 CABS1Q96KC9 395 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 CRNKL1Q9BZJ0 848 aaKnown RBP10.43□□□□□ -0.74
VPS13A-203ENST00000360280 PANK2Q9BZ23 570 aa10.43□□□□□ -0.74
VPS13A-203ENST00000360280 EVCP57679 992 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 PPP1R2P41236 205 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 HSP90AA5PQ58FG0 334 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 HS2ST1Q7LGA3 356 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 ZC4H2Q9NQZ6 224 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 GOLGA6BA6NDN3 693 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 IFIT1BQ5T764 474 aaKnown RBP10.42□□□□□ -0.74
VPS13A-203ENST00000360280 TXNDC9O14530 226 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 MYCNP04198 464 aaPredicted RBP10.42□□□□□ -0.74
VPS13A-203ENST00000360280 INPP1P49441 399 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 VSIG1Q86XK7 387 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 BAG1Q99933 345 aaPredicted RBP10.42□□□□□ -0.74
VPS13A-203ENST00000360280 RALGAPBQ86X10 1494 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 CCDC89Q8N998 374 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 RTL9Q8NET4 1388 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 TTLL12Q14166 644 aaPredicted RBP10.42□□□□□ -0.74
VPS13A-203ENST00000360280 CABP5Q9NP86 173 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 CNPY2Q9Y2B0 182 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 SPDYE3A6NKU9 549 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.42□□□□□ -0.74
VPS13A-203ENST00000360280 TTF2Q9UNY4 1162 aaKnown RBP10.42□□□□□ -0.74
VPS13A-203ENST00000360280 NAPGQ99747 312 aaPredicted RBP10.42□□□□□ -0.74
VPS13A-203ENST00000360280 SLC8A3P57103 927 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 TYRO3Q06418 890 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 KIFC2Q96AC6 838 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 CALML3P27482 149 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 PSMD6Q15008 389 aa10.42□□□□□ -0.74
VPS13A-203ENST00000360280 XAB2Q9HCS7 855 aaKnown RBP10.41□□□□□ -0.74
VPS13A-203ENST00000360280 SLC8A1P32418 973 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 CDK19Q9BWU1 502 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 EIF2AK4Q9P2K8 1649 aaKnown RBP10.41□□□□□ -0.74
VPS13A-203ENST00000360280 WDR46O15213 610 aaKnown RBP10.41□□□□□ -0.74
VPS13A-203ENST00000360280 LMOD1P29536 600 aaPredicted RBP10.41□□□□□ -0.74
VPS13A-203ENST00000360280 TMCO4Q5TGY1 634 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 LDHCP07864 332 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 SMIM24O75264 130 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 SMARCC2Q8TAQ2 1214 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 ATL3Q6DD88 541 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 ZGPATQ8N5A5 531 aaKnown RBP10.41□□□□□ -0.74
VPS13A-203ENST00000360280 SDCCAG3Q96C92 435 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 TBC1D32Q96NH3 1257 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 TMOD3Q9NYL9 352 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 NCAPD3P42695 1498 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 FANCD2Q9BXW9 1451 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 GNAQP50148 359 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 PHLDB3Q6NSJ2 640 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 ECHDC1Q9NTX5 307 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 STX8Q9UNK0 236 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 ZBTB43O43298 467 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 TMPOP42166 694 aaKnown RBP10.41□□□□□ -0.74
VPS13A-203ENST00000360280 SLC4A8Q2Y0W8 1093 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 AMOTQ4VCS5 1084 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 BRAPQ7Z569 592 aa10.41□□□□□ -0.74
VPS13A-203ENST00000360280 ZNF830Q96NB3 372 aaPredicted RBP10.41□□□□□ -0.74
VPS13A-203ENST00000360280 DENND2CQ68D51 928 aa10.4□□□□□ -0.74
VPS13A-203ENST00000360280 B4DLN1 442 aa10.4□□□□□ -0.74
VPS13A-203ENST00000360280 TSPY3P0CV98 308 aa10.4□□□□□ -0.74
VPS13A-203ENST00000360280 TSPY8P0CW00 308 aa10.4□□□□□ -0.74
VPS13A-203ENST00000360280 MRPL12P52815 198 aaKnown RBP10.4□□□□□ -0.74
VPS13A-203ENST00000360280 LGSNQ5TDP6 509 aa10.4□□□□□ -0.74
VPS13A-203ENST00000360280 DUSP27Q5VZP5 1158 aa10.4□□□□□ -0.74
VPS13A-203ENST00000360280 NAA16Q6N069 864 aaPredicted RBP10.4□□□□□ -0.74
VPS13A-203ENST00000360280 CCDC85AQ96PX6 553 aaPredicted RBP10.4□□□□□ -0.74
VPS13A-203ENST00000360280 ALG1Q9BT22 464 aa10.4□□□□□ -0.74
VPS13A-203ENST00000360280 DNAJC25Q9H1X3 360 aa10.4□□□□□ -0.74
VPS13A-203ENST00000360280 KRT3P12035 628 aa10.4□□□□□ -0.74
VPS13A-203ENST00000360280 MCM7P33993 719 aa10.4□□□□□ -0.74
VPS13A-203ENST00000360280 RASA3Q14644 834 aa10.4□□□□□ -0.74
VPS13A-203ENST00000360280 FAM204AQ9H8W3 233 aa10.4□□□□□ -0.74
VPS13A-203ENST00000360280 SPATS2LQ9NUQ6 558 aaKnown RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms