RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 GNA11P29992 359 aa11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 FAM76AQ8TAV0 307 aa11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 TMEM87BQ96K49 555 aa11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 RNF113AO15541 343 aaKnown RBP11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 CAPN2P17655 700 aa11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 FCHSD1Q86WN1 690 aa11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 CHPF2Q9P2E5 772 aa11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 MAATS1Q7Z4T9 603 aa11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 SLC26A6Q9BXS9 759 aa11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 RPS6KB1P23443 525 aa11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 TFIP11Q9UBB9 837 aaKnown RBP11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 YEATS2Q9ULM3 1422 aa11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 KRT2P35908 639 aa11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 ATP2B2Q01814 1243 aa11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 AKR1B15C9JRZ8 316 aaPredicted RBP11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 IFIT1BQ5T764 474 aaKnown RBP11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 BAG1Q99933 345 aaPredicted RBP11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 NUCKS1Q9H1E3 243 aaKnown RBP11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.65□□□□□ -0.54
CCDC88A-202ENST00000336838 TBCAO75347 108 aaKnown RBP11.65□□□□□ -0.54
CCDC88A-202ENST00000336838 DNAJC25Q9H1X3 360 aa11.65□□□□□ -0.54
CCDC88A-202ENST00000336838 TRMT112Q9UI30 125 aaKnown RBP11.65□□□□□ -0.54
CCDC88A-202ENST00000336838 IKBKGQ9Y6K9 419 aa11.65□□□□□ -0.54
CCDC88A-202ENST00000336838 RLBP1P12271 317 aa11.65□□□□□ -0.54
CCDC88A-202ENST00000336838 MSL1Q68DK7 614 aa11.65□□□□□ -0.54
CCDC88A-202ENST00000336838 BCORL1Q5H9F3 1711 aa11.65□□□□□ -0.54
CCDC88A-202ENST00000336838 PPP2R5EQ16537 467 aa11.65□□□□□ -0.54
CCDC88A-202ENST00000336838 RASSF4Q9H2L5 321 aa11.65□□□□□ -0.54
CCDC88A-202ENST00000336838 CDK12Q9NYV4 1490 aaPredicted RBP11.65□□□□□ -0.54
CCDC88A-202ENST00000336838 ARHGAP25P42331 645 aa11.65□□□□□ -0.54
CCDC88A-202ENST00000336838 RNF187Q5TA31 235 aaPredicted RBP11.65□□□□□ -0.54
CCDC88A-202ENST00000336838 MLKLQ8NB16 471 aa11.65□□□□□ -0.54
CCDC88A-202ENST00000336838 LUC7L2Q9Y383 392 aaKnown RBP11.65□□□□□ -0.54
CCDC88A-202ENST00000336838 ZCCHC11Q5TAX3 1644 aaKnown RBP11.65□□□□□ -0.54
CCDC88A-202ENST00000336838 HLA-DOAP06340 250 aa11.65□□□□□ -0.55
CCDC88A-202ENST00000336838 CYP26C1Q6V0L0 522 aa11.65□□□□□ -0.55
CCDC88A-202ENST00000336838 CDC25BP30305 580 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 TTC31Q49AM3 519 aaPredicted RBP11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 CCDC42Q96M95 316 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 BIN1O00499 593 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 CCDC121Q6ZUS5 278 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 PLCD1P51178 756 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 MPRIPQ6WCQ1 1025 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 DDX54Q8TDD1 881 aaKnown RBP11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 KIF4AO95239 1232 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 EIF4A2Q14240 407 aaKnown RBP11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 GOPCQ9HD26 462 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 AATKQ6ZMQ8 1374 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 ITSN1Q15811 1721 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 SH3BGRP55822 239 aaPredicted RBP11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 SKIDA1Q1XH10 827 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 SGSM2O43147 1006 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 ZNF75DP51815 510 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 ATP2B3Q16720 1220 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 LDHAL6AQ6ZMR3 332 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 IFT74Q96LB3 600 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 MTMR7Q9Y216 660 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 RRAGBQ5VZM2 374 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 CADPS2Q86UW7 1296 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 C8orf58Q8NAV2 365 aa11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 MPHOSPH6Q99547 160 aaKnown RBP11.64□□□□□ -0.55
CCDC88A-202ENST00000336838 GTF2A1P52655 376 aaPredicted RBP11.63□□□□□ -0.55
CCDC88A-202ENST00000336838 NMIQ13287 307 aaPredicted RBP11.63□□□□□ -0.55
CCDC88A-202ENST00000336838 CUTAO60888 179 aa11.63□□□□□ -0.55
CCDC88A-202ENST00000336838 ANKIB1Q9P2G1 1089 aa11.63□□□□□ -0.55
CCDC88A-202ENST00000336838 KDM6BO15054 1643 aa11.63□□□□□ -0.55
CCDC88A-202ENST00000336838 TMTC1Q8IUR5 882 aa11.63□□□□□ -0.55
CCDC88A-202ENST00000336838 LZTS2Q9BRK4 669 aa11.63□□□□□ -0.55
CCDC88A-202ENST00000336838 MTRF1LQ9UGC7 380 aaKnown RBP11.63□□□□□ -0.55
CCDC88A-202ENST00000336838 SPAG5Q96R06 1193 aa11.63□□□□□ -0.55
CCDC88A-202ENST00000336838 PRDM10Q9NQV6 1147 aa11.63□□□□□ -0.55
CCDC88A-202ENST00000336838 CFAP58Q5T655 872 aa11.63□□□□□ -0.55
CCDC88A-202ENST00000336838 CNKSR2Q8WXI2 1034 aa11.63□□□□□ -0.55
CCDC88A-202ENST00000336838 BRD3Q15059 726 aa11.63□□□□□ -0.55
CCDC88A-202ENST00000336838 ACTN2P35609 894 aa11.63□□□□□ -0.55
CCDC88A-202ENST00000336838 CHMP4BP1P59074 171 aa11.63□□□□□ -0.55
CCDC88A-202ENST00000336838 RNF17Q9BXT8 1623 aaKnown RBP11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 A0A1B0GUL7 405 aa11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 PPFIA1Q13136 1202 aa11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 GPR161Q8N6U8 529 aaKnown RBP11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 MADDQ8WXG6 1647 aa11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 MAP2P11137 1827 aaKnown RBP11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 PRC1O43663 620 aa11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 FERMT2Q96AC1 680 aa11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 KIF20BQ96Q89 1820 aa11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 PTPDC1A2A3K4 754 aa11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 TSPY2A6NKD2 308 aa11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 ATP8B1O43520 1251 aa11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 EFCAB6Q5THR3 1501 aa11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 PTGS1P23219 599 aa11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 NAPGQ99747 312 aaPredicted RBP11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 CHL1O00533 1208 aa11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 MCM6Q14566 821 aa11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 BRD1O95696 1058 aa11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 RPL13P26373 211 aaKnown RBP11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 TRMT2AQ8IZ69 625 aaKnown RBP11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 NEK11Q8NG66 645 aa11.62□□□□□ -0.55
CCDC88A-202ENST00000336838 PPP2R3AQ06190 1150 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 CNNM4Q6P4Q7 775 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 CRACR2BQ8N4Y2 399 aaPredicted RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms