RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 CCDC85AQ96PX6 553 aaPredicted RBP25.66■■□□□ 1.7
SHMT1-201ENST00000316694 PRDM11Q9NQV5 511 aa25.66■■□□□ 1.7
SHMT1-201ENST00000316694 CIAO1O76071 339 aa25.65■■□□□ 1.7
SHMT1-201ENST00000316694 POLR3DP05423 398 aaPredicted RBP25.65■■□□□ 1.7
SHMT1-201ENST00000316694 ADORA1P30542 326 aa25.65■■□□□ 1.7
SHMT1-201ENST00000316694 SF3A1Q15459 793 aaKnown RBP25.65■■□□□ 1.7
SHMT1-201ENST00000316694 CCDC158Q5M9N0 1113 aa25.65■■□□□ 1.7
SHMT1-201ENST00000316694 CHMP4CQ96CF2 233 aa25.65■■□□□ 1.7
SHMT1-201ENST00000316694 ZNF330Q9Y3S2 320 aaPredicted RBP25.65■■□□□ 1.7
SHMT1-201ENST00000316694 NUP188Q5SRE5 1749 aa25.64■■□□□ 1.7
SHMT1-201ENST00000316694 IMMTQ16891 758 aaKnown RBP25.64■■□□□ 1.7
SHMT1-201ENST00000316694 CCDC57Q2TAC2 916 aa25.64■■□□□ 1.7
SHMT1-201ENST00000316694 FMR1NBQ8N0W7 255 aaPredicted RBP25.64■■□□□ 1.7
SHMT1-201ENST00000316694 C8orf76Q96K31 380 aa25.64■■□□□ 1.7
SHMT1-201ENST00000316694 CTNNA3Q9UI47 895 aa25.64■■□□□ 1.7
SHMT1-201ENST00000316694 STK38Q15208 465 aa25.64■■□□□ 1.69
SHMT1-201ENST00000316694 RTEL1Q9NZ71 1219 aa25.64■■□□□ 1.69
SHMT1-201ENST00000316694 CLIC4Q9Y696 253 aa25.64■■□□□ 1.69
SHMT1-201ENST00000316694 PCDH11XQ9BZA7 1347 aa25.64■■□□□ 1.69
SHMT1-201ENST00000316694 PCDH11YQ9BZA8 1340 aa25.64■■□□□ 1.69
SHMT1-201ENST00000316694 SKILP12757 684 aa25.63■■□□□ 1.69
SHMT1-201ENST00000316694 NDUFA8P51970 172 aa25.63■■□□□ 1.69
SHMT1-201ENST00000316694 CCDC112Q8NEF3 446 aa25.63■■□□□ 1.69
SHMT1-201ENST00000316694 NAT10Q9H0A0 1025 aaKnown RBP25.63■■□□□ 1.69
SHMT1-201ENST00000316694 KLF18A0A0U1RQI7 1052 aa25.63■■□□□ 1.69
SHMT1-201ENST00000316694 USP27XA6NNY8 438 aa25.63■■□□□ 1.69
SHMT1-201ENST00000316694 GOLGA8BA8MQT2 603 aa25.63■■□□□ 1.69
SHMT1-201ENST00000316694 FOXP2O15409 715 aa25.63■■□□□ 1.69
SHMT1-201ENST00000316694 PRC1O43663 620 aa25.63■■□□□ 1.69
SHMT1-201ENST00000316694 NCBP1Q09161 790 aaKnown RBP25.63■■□□□ 1.69
SHMT1-201ENST00000316694 ADALQ6DHV7 355 aa25.63■■□□□ 1.69
SHMT1-201ENST00000316694 XAGE2Q96GT9 111 aa25.63■■□□□ 1.69
SHMT1-201ENST00000316694 PAXBP1Q9Y5B6 917 aa25.63■■□□□ 1.69
SHMT1-201ENST00000316694 WDR17Q8IZU2 1322 aa25.63■■□□□ 1.69
SHMT1-201ENST00000316694 SPDYE4A6NLX3 237 aa25.62■■□□□ 1.69
SHMT1-201ENST00000316694 FGAP02671 866 aa25.62■■□□□ 1.69
SHMT1-201ENST00000316694 HSPA2P54652 639 aa25.62■■□□□ 1.69
SHMT1-201ENST00000316694 LRRFIP1Q32MZ4 808 aaKnown RBP25.62■■□□□ 1.69
SHMT1-201ENST00000316694 ATG3Q9NT62 314 aa25.62■■□□□ 1.69
SHMT1-201ENST00000316694 PLEKHG2Q9H7P9 1386 aa25.62■■□□□ 1.69
SHMT1-201ENST00000316694 CCDC69A6NI79 296 aa25.62■■□□□ 1.69
SHMT1-201ENST00000316694 NEMFO60524 1076 aa25.62■■□□□ 1.69
SHMT1-201ENST00000316694 CEP135Q66GS9 1140 aa25.62■■□□□ 1.69
SHMT1-201ENST00000316694 BRINP3Q76B58 766 aa25.62■■□□□ 1.69
SHMT1-201ENST00000316694 LINC00301Q8NCQ3 95 aa25.62■■□□□ 1.69
SHMT1-201ENST00000316694 GJB4Q9NTQ9 266 aa25.62■■□□□ 1.69
SHMT1-201ENST00000316694 U2AF2P26368 475 aaKnown RBP eCLIP25.61■■□□□ 1.698e-8■■■■■ 27.5
SHMT1-201ENST00000316694 EVCP57679 992 aa25.61■■□□□ 1.69
SHMT1-201ENST00000316694 ZRSR1Q15695 479 aaKnown RBP25.61■■□□□ 1.69
SHMT1-201ENST00000316694 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.61■■□□□ 1.69
SHMT1-201ENST00000316694 BCL11BQ9C0K0 894 aaPredicted RBP25.61■■□□□ 1.69
SHMT1-201ENST00000316694 SCARF1Q14162 830 aa25.61■■□□□ 1.69
SHMT1-201ENST00000316694 ORC3Q9UBD5 711 aaPredicted RBP25.61■■□□□ 1.69
SHMT1-201ENST00000316694 SPEF2Q9C093 1822 aa25.61■■□□□ 1.69
SHMT1-201ENST00000316694 ERVV-2B6SEH9 535 aa25.6■■□□□ 1.69
SHMT1-201ENST00000316694 CPLX1O14810 134 aa25.6■■□□□ 1.69
SHMT1-201ENST00000316694 DHX16O60231 1041 aaKnown RBP25.6■■□□□ 1.69
SHMT1-201ENST00000316694 RBM6P78332 1123 aaKnown RBP25.6■■□□□ 1.69
SHMT1-201ENST00000316694 FBXL16Q8N461 479 aa25.6■■□□□ 1.69
SHMT1-201ENST00000316694 PUS7LQ9H0K6 701 aaKnown RBP25.6■■□□□ 1.69
SHMT1-201ENST00000316694 NWD2Q9ULI1 1742 aa25.6■■□□□ 1.69
SHMT1-201ENST00000316694 ZAP70P43403 619 aa25.59■■□□□ 1.69
SHMT1-201ENST00000316694 TAF7LQ5H9L4 462 aa25.59■■□□□ 1.69
SHMT1-201ENST00000316694 PI16Q6UXB8 463 aa25.59■■□□□ 1.69
SHMT1-201ENST00000316694 AKAP2Q9Y2D5 859 aa25.59■■□□□ 1.69
SHMT1-201ENST00000316694 A0A1W2PQ27 194 aa25.59■■□□□ 1.69
SHMT1-201ENST00000316694 A0A1W2PQ64 194 aa25.59■■□□□ 1.69
SHMT1-201ENST00000316694 A0A1W2PQD8 194 aa25.59■■□□□ 1.69
SHMT1-201ENST00000316694 RALYLQ86SE5 291 aaKnown RBP25.59■■□□□ 1.69
SHMT1-201ENST00000316694 FBXO18Q8NFZ0 1043 aa25.59■■□□□ 1.69
SHMT1-201ENST00000316694 TRMT1Q9NXH9 659 aaKnown RBP25.59■■□□□ 1.69
SHMT1-201ENST00000316694 HPS5Q9UPZ3 1129 aa25.59■■□□□ 1.69
SHMT1-201ENST00000316694 PARP4Q9UKK3 1724 aaKnown RBP25.59■■□□□ 1.69
SHMT1-201ENST00000316694 ZFYP08048 801 aaPredicted RBP25.58■■□□□ 1.69
SHMT1-201ENST00000316694 NAA30Q147X3 362 aaPredicted RBP25.58■■□□□ 1.69
SHMT1-201ENST00000316694 DPCR1Q3MIW9 517 aa25.58■■□□□ 1.69
SHMT1-201ENST00000316694 MB21D2Q8IYB1 491 aaPredicted RBP25.58■■□□□ 1.69
SHMT1-201ENST00000316694 KCNG4Q8TDN1 519 aa25.58■■□□□ 1.69
SHMT1-201ENST00000316694 TAOK2Q9UL54 1235 aa25.58■■□□□ 1.69
SHMT1-201ENST00000316694 SPTLC2O15270 562 aa25.58■■□□□ 1.69
SHMT1-201ENST00000316694 NCOA7Q8NI08 942 aa25.58■■□□□ 1.69
SHMT1-201ENST00000316694 KIAA1468Q9P260 1216 aa25.58■■□□□ 1.69
SHMT1-201ENST00000316694 PRDM4Q9UKN5 801 aa25.58■■□□□ 1.69
SHMT1-201ENST00000316694 CCZ1BP86790 482 aa25.57■■□□□ 1.68
SHMT1-201ENST00000316694 CCZ1P86791 482 aaPredicted RBP25.57■■□□□ 1.68
SHMT1-201ENST00000316694 PTPN14Q15678 1187 aa25.57■■□□□ 1.68
SHMT1-201ENST00000316694 BIN1O00499 593 aa25.57■■□□□ 1.68
SHMT1-201ENST00000316694 ANTXR2P58335 489 aa25.57■■□□□ 1.68
SHMT1-201ENST00000316694 MYSM1Q5VVJ2 828 aa25.57■■□□□ 1.68
SHMT1-201ENST00000316694 SYNE3Q6ZMZ3 975 aa25.57■■□□□ 1.68
SHMT1-201ENST00000316694 APPBP2Q92624 585 aa25.57■■□□□ 1.68
SHMT1-201ENST00000316694 FAM89AQ96GI7 184 aa25.57■■□□□ 1.68
SHMT1-201ENST00000316694 STRN4Q9NRL3 753 aa25.57■■□□□ 1.68
SHMT1-201ENST00000316694 POLR3EQ9NVU0 708 aa25.57■■□□□ 1.68
SHMT1-201ENST00000316694 KCPQ6ZWJ8 1503 aa25.57■■□□□ 1.68
SHMT1-201ENST00000316694 ZNF213O14771 459 aa25.56■■□□□ 1.68
SHMT1-201ENST00000316694 YEATS4O95619 227 aa25.56■■□□□ 1.68
SHMT1-201ENST00000316694 KIF28PB7ZC32 967 aa25.55■■□□□ 1.68
SHMT1-201ENST00000316694 GPAA1O43292 621 aa25.55■■□□□ 1.68
SHMT1-201ENST00000316694 IL2RBP14784 551 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms