RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 I3L4J1 428 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 CHMP4BP1P59074 171 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 MOV10L1Q9BXT6 1211 aaKnown RBP5.44□□□□□ -1.54
CSMD3-201ENST00000297405 DLG5Q8TDM6 1919 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 UBTFL1P0CB47 393 aaPredicted RBP5.44□□□□□ -1.54
CSMD3-201ENST00000297405 KCNA4P22459 653 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 TPD52P55327 224 aaPredicted RBP5.44□□□□□ -1.54
CSMD3-201ENST00000297405 TSC22D3Q99576 134 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 RAB17Q9H0T7 212 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 DNAJC17Q9NVM6 304 aaKnown RBP5.44□□□□□ -1.54
CSMD3-201ENST00000297405 GNL3LQ9NVN8 582 aaKnown RBP5.44□□□□□ -1.54
CSMD3-201ENST00000297405 SCN9AQ15858 1988 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 APC2O95996 2303 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 CDK5RAP2Q96SN8 1893 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 BICDL2A1A5D9 508 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 H0YC42 278 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 RNF40O75150 1001 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 ZNF407Q9C0G0 2248 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 MIA3Q5JRA6 1907 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 EIF3CLB5ME19 914 aaKnown RBP5.44□□□□□ -1.54
CSMD3-201ENST00000297405 EPSTI1Q96J88 318 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 EFHD1Q9BUP0 239 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 TXNDC16Q9P2K2 825 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 UTP11Q9Y3A2 253 aaKnown RBP5.44□□□□□ -1.54
CSMD3-201ENST00000297405 EHBP1L1Q8N3D4 1523 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 PALM2Q8IXS6 379 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 CECR2Q9BXF3 1484 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 A0A087WZG4 1122 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 ESRRBO95718 433 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 EIF2S1P05198 315 aaKnown RBP5.44□□□□□ -1.54
CSMD3-201ENST00000297405 STX17P56962 302 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 TMEM266Q2M3C6 531 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 SDCCAG3Q96C92 435 aa5.44□□□□□ -1.54
CSMD3-201ENST00000297405 EFCAB8A8MWE9 144 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 PSMA4P25789 261 aaKnown RBP5.43□□□□□ -1.54
CSMD3-201ENST00000297405 CCT6AP40227 531 aaKnown RBP5.43□□□□□ -1.54
CSMD3-201ENST00000297405 LRRC8BQ6P9F7 803 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 STAMBPL1Q96FJ0 436 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 RALGAPBQ86X10 1494 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 PPP2R5AQ15172 486 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 CCDC96Q2M329 555 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 CCDC151A5D8V7 595 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 PAK2Q13177 524 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 RASIP1Q5U651 963 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 USP5P45974 858 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 FOXD4L6Q3SYB3 417 aaPredicted RBP5.43□□□□□ -1.54
CSMD3-201ENST00000297405 FOXD4L3Q6VB84 417 aaPredicted RBP5.43□□□□□ -1.54
CSMD3-201ENST00000297405 VPS52Q8N1B4 723 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 NEK2P51955 445 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 ZNF445P59923 1031 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 RILPL1Q5EBL4 403 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 CHD1LQ86WJ1 897 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 LNPKQ9C0E8 428 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 ANLNQ9NQW6 1124 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 DNAI1Q9UI46 699 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 GOLGA8KD6RF30 607 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 YY1P25490 414 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 ANGPT1Q15389 498 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 SLFNL1Q499Z3 407 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 DUSP27Q5VZP5 1158 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 DRC1Q96MC2 740 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 KLHL14Q9P2G3 628 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 SATB1Q01826 763 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 NUTM2DQ5VT03 806 aaPredicted RBP5.43□□□□□ -1.54
CSMD3-201ENST00000297405 NUTM2AQ8IVF1 878 aaPredicted RBP5.43□□□□□ -1.54
CSMD3-201ENST00000297405 CCDC69A6NI79 296 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 ZEB2O60315 1214 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 ZBTB41Q5SVQ8 909 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 ZSCAN23Q3MJ62 389 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 TBC1D32Q96NH3 1257 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 ZBTB12Q9Y330 459 aaPredicted RBP5.43□□□□□ -1.54
CSMD3-201ENST00000297405 MED12Q93074 2177 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 GAS8O95995 478 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 UBASH3AP57075 661 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 FCHSD1Q86WN1 690 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 RABGGTAQ92696 567 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.43□□□□□ -1.54
CSMD3-201ENST00000297405 PALMDQ9NP74 551 aa5.43□□□□□ -1.54
CSMD3-201ENST00000297405 MDC1Q14676 2089 aaKnown RBP5.43□□□□□ -1.54
CSMD3-201ENST00000297405 ARHGAP6O43182 974 aa5.42□□□□□ -1.54
CSMD3-201ENST00000297405 SLC4A3P48751 1232 aa5.42□□□□□ -1.54
CSMD3-201ENST00000297405 TEFQ10587 303 aa5.42□□□□□ -1.54
CSMD3-201ENST00000297405 HAUS1Q96CS2 278 aa5.42□□□□□ -1.54
CSMD3-201ENST00000297405 TANGO6Q9C0B7 1094 aa5.42□□□□□ -1.54
CSMD3-201ENST00000297405 ATF7IPQ6VMQ6 1270 aa5.42□□□□□ -1.54
CSMD3-201ENST00000297405 ST13P4Q8IZP2 240 aaPredicted RBP5.42□□□□□ -1.54
CSMD3-201ENST00000297405 OSBPL9Q96SU4 736 aa5.42□□□□□ -1.54
CSMD3-201ENST00000297405 NUP58Q9BVL2 599 aa5.42□□□□□ -1.54
CSMD3-201ENST00000297405 MYSM1Q5VVJ2 828 aa5.42□□□□□ -1.54
CSMD3-201ENST00000297405 GLRX3O76003 335 aaKnown RBP5.42□□□□□ -1.54
CSMD3-201ENST00000297405 RANBP1P43487 201 aa5.42□□□□□ -1.54
CSMD3-201ENST00000297405 DENND2CQ68D51 928 aa5.42□□□□□ -1.54
CSMD3-201ENST00000297405 LRPPRCP42704 1394 aaKnown RBP5.42□□□□□ -1.54
CSMD3-201ENST00000297405 MCTP2Q6DN12 878 aa5.42□□□□□ -1.54
CSMD3-201ENST00000297405 SYCE1Q8N0S2 351 aa5.42□□□□□ -1.54
CSMD3-201ENST00000297405 CCDC51Q96ER9 411 aa5.42□□□□□ -1.54
CSMD3-201ENST00000297405 SH2D4AQ9H788 454 aa5.42□□□□□ -1.54
CSMD3-201ENST00000297405 SYF2O95926 243 aaKnown RBP5.42□□□□□ -1.54
CSMD3-201ENST00000297405 XRCC6P12956 609 aaKnown RBP eCLIP5.42□□□□□ -1.54
CSMD3-201ENST00000297405 RAP1GDS1P52306 607 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms