RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 HAUS2Q9NVX0 235 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 ANKRD50Q9ULJ7 1429 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 ZBTB43O43298 467 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 HPDP32754 393 aaPredicted RBP12.79□□□□□ -0.36
PTPN4-201ENST00000263708 ATP6V1E1P36543 226 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 WAPLQ7Z5K2 1190 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 HS2ST1Q7LGA3 356 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 SRGAP1Q7Z6B7 1085 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 TSGA10Q9BZW7 698 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 HGSO14964 777 aaPredicted RBP12.79□□□□□ -0.36
PTPN4-201ENST00000263708 RHOXF2BP0C7M4 288 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 KRT83P78385 493 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 AMOTQ4VCS5 1084 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 GIMAP6Q6P9H5 292 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 CCDC125Q86Z20 511 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 RHOXF2Q9BQY4 288 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 GPHNQ9NQX3 736 aaPredicted RBP12.79□□□□□ -0.36
PTPN4-201ENST00000263708 EBAG9O00559 213 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 CNGA1P29973 690 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 FNBP1Q96RU3 617 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 GINS2Q9Y248 185 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 SYT1P21579 422 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 UBE2HP62256 183 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 JARID2Q92833 1246 aaPredicted RBP12.79□□□□□ -0.36
PTPN4-201ENST00000263708 DHX58Q96C10 678 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 PLCB4Q15147 1175 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 ZNF804AQ7Z570 1209 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 NSMCE1Q8WV22 266 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 CCDC42Q96M95 316 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 VCXQ9H320 206 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 TXNDC9O14530 226 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 CCT6AP40227 531 aaKnown RBP12.79□□□□□ -0.36
PTPN4-201ENST00000263708 MAP7Q14244 749 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 ANKRD24Q8TF21 1146 aa12.79□□□□□ -0.36
PTPN4-201ENST00000263708 KLF18A0A0U1RQI7 1052 aa12.78□□□□□ -0.36
PTPN4-201ENST00000263708 BICDL2A1A5D9 508 aa12.78□□□□□ -0.36
PTPN4-201ENST00000263708 ZNF830Q96NB3 372 aaPredicted RBP12.78□□□□□ -0.36
PTPN4-201ENST00000263708 SETDB2Q96T68 719 aa12.78□□□□□ -0.36
PTPN4-201ENST00000263708 ERBINQ96RT1 1412 aa12.78□□□□□ -0.36
PTPN4-201ENST00000263708 CCDC62Q6P9F0 684 aa12.78□□□□□ -0.36
PTPN4-201ENST00000263708 TMPOP42166 694 aaKnown RBP12.78□□□□□ -0.36
PTPN4-201ENST00000263708 LRRC2Q9BYS8 371 aa12.78□□□□□ -0.36
PTPN4-201ENST00000263708 TNNI2P48788 182 aa12.78□□□□□ -0.36
PTPN4-201ENST00000263708 INPP1P49441 399 aa12.78□□□□□ -0.36
PTPN4-201ENST00000263708 ESR2Q92731 530 aa12.78□□□□□ -0.36
PTPN4-201ENST00000263708 CSRNP2Q9H175 543 aa12.78□□□□□ -0.36
PTPN4-201ENST00000263708 LUC7L2Q9Y383 392 aaKnown RBP12.78□□□□□ -0.36
PTPN4-201ENST00000263708 UBE3BQ7Z3V4 1068 aa12.78□□□□□ -0.36
PTPN4-201ENST00000263708 PLIN2Q99541 437 aa12.78□□□□□ -0.36
PTPN4-201ENST00000263708 NSD3Q9BZ95 1437 aa12.78□□□□□ -0.36
PTPN4-201ENST00000263708 XRCC6P12956 609 aaKnown RBP eCLIP12.78□□□□□ -0.36
PTPN4-201ENST00000263708 TSHZ3Q63HK5 1081 aa12.77□□□□□ -0.36
PTPN4-201ENST00000263708 SPDYE16A6NNV3 312 aaPredicted RBP12.77□□□□□ -0.36
PTPN4-201ENST00000263708 KARSQ15046 597 aaKnown RBP12.77□□□□□ -0.36
PTPN4-201ENST00000263708 SPDYE2Q495Y8 402 aa12.77□□□□□ -0.36
PTPN4-201ENST00000263708 POLA1P09884 1462 aaPredicted RBP12.77□□□□□ -0.36
PTPN4-201ENST00000263708 SPOPO43791 374 aa12.77□□□□□ -0.37
PTPN4-201ENST00000263708 TRPC3Q13507 836 aa12.77□□□□□ -0.37
PTPN4-201ENST00000263708 AOPEPQ8N6M6 819 aa12.77□□□□□ -0.37
PTPN4-201ENST00000263708 MCUR1Q96AQ8 359 aa12.77□□□□□ -0.37
PTPN4-201ENST00000263708 IFT74Q96LB3 600 aa12.77□□□□□ -0.37
PTPN4-201ENST00000263708 BEGAINQ9BUH8 593 aa12.77□□□□□ -0.37
PTPN4-201ENST00000263708 LZTFL1Q9NQ48 299 aa12.77□□□□□ -0.37
PTPN4-201ENST00000263708 BUB1BO60566 1050 aaPredicted RBP12.77□□□□□ -0.37
PTPN4-201ENST00000263708 TNPO1Q92973 898 aaKnown RBP12.77□□□□□ -0.37
PTPN4-201ENST00000263708 ZSCAN16Q9H4T2 348 aaPredicted RBP12.77□□□□□ -0.37
PTPN4-201ENST00000263708 GBP6Q6ZN66 633 aa12.77□□□□□ -0.37
PTPN4-201ENST00000263708 GTF3C6Q969F1 213 aa12.77□□□□□ -0.37
PTPN4-201ENST00000263708 ZNF408Q9H9D4 720 aa12.77□□□□□ -0.37
PTPN4-201ENST00000263708 C11orf95C9JLR9 678 aaPredicted RBP12.77□□□□□ -0.37
PTPN4-201ENST00000263708 PPFIA2O75334 1257 aa12.77□□□□□ -0.37
PTPN4-201ENST00000263708 BMP15O95972 392 aa12.77□□□□□ -0.37
PTPN4-201ENST00000263708 ANO3Q9BYT9 981 aa12.77□□□□□ -0.37
PTPN4-201ENST00000263708 SKILP12757 684 aa12.77□□□□□ -0.37
PTPN4-201ENST00000263708 KRT2P35908 639 aa12.77□□□□□ -0.37
PTPN4-201ENST00000263708 RILPL1Q5EBL4 403 aa12.77□□□□□ -0.37
PTPN4-201ENST00000263708 MAN1A1P33908 653 aa12.76□□□□□ -0.37
PTPN4-201ENST00000263708 PDCD7Q8N8D1 485 aaKnown RBP12.76□□□□□ -0.37
PTPN4-201ENST00000263708 VAV2P52735 878 aa12.76□□□□□ -0.37
PTPN4-201ENST00000263708 UTP11Q9Y3A2 253 aaKnown RBP12.76□□□□□ -0.37
PTPN4-201ENST00000263708 SEPT8Q92599 483 aa12.76□□□□□ -0.37
PTPN4-201ENST00000263708 FAM76AQ8TAV0 307 aa12.76□□□□□ -0.37
PTPN4-201ENST00000263708 EPB41P11171 864 aaKnown RBP12.76□□□□□ -0.37
PTPN4-201ENST00000263708 CCDC122Q5T0U0 273 aa12.76□□□□□ -0.37
PTPN4-201ENST00000263708 KCNG4Q8TDN1 519 aa12.76□□□□□ -0.37
PTPN4-201ENST00000263708 CNNM2Q9H8M5 875 aa12.76□□□□□ -0.37
PTPN4-201ENST00000263708 PPP4R4Q6NUP7 873 aa12.76□□□□□ -0.37
PTPN4-201ENST00000263708 CCDC169A6NNP5 214 aa12.76□□□□□ -0.37
PTPN4-201ENST00000263708 I3L4J1 428 aa12.76□□□□□ -0.37
PTPN4-201ENST00000263708 C4orf50Q6ZRC1 276 aa12.76□□□□□ -0.37
PTPN4-201ENST00000263708 CHMP2AO43633 222 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 TNNC1P63316 161 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 PPARDQ03181 441 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 ZNF569Q5MCW4 686 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 KRT79Q5XKE5 535 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 NAA16Q6N069 864 aaPredicted RBP12.75□□□□□ -0.37
PTPN4-201ENST00000263708 CCDC26Q8TAB7 109 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 HMG20BQ9P0W2 317 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 CEP128Q6ZU80 1094 aa12.75□□□□□ -0.37
PTPN4-201ENST00000263708 NBPF11Q86T75 865 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms