RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 NOC2LQ9Y3T9 749 aaKnown RBP12.52□□□□□ -0.4
MSH6-201ENST00000234420 A0A087WZG4 1122 aa12.52□□□□□ -0.4
MSH6-201ENST00000234420 PPP1R42Q7Z4L9 355 aa12.52□□□□□ -0.4
MSH6-201ENST00000234420 UBLCP1Q8WVY7 318 aaPredicted RBP12.52□□□□□ -0.4
MSH6-201ENST00000234420 DDX12PQ92771 950 aa12.52□□□□□ -0.4
MSH6-201ENST00000234420 ABTB1Q969K4 478 aaPredicted RBP12.52□□□□□ -0.4
MSH6-201ENST00000234420 KIF9Q9HAQ2 790 aa12.52□□□□□ -0.4
MSH6-201ENST00000234420 NOP56O00567 594 aaKnown RBP12.52□□□□□ -0.41
MSH6-201ENST00000234420 TCP10Q12799 353 aa12.52□□□□□ -0.41
MSH6-201ENST00000234420 KIF5AQ12840 1032 aa12.52□□□□□ -0.41
MSH6-201ENST00000234420 CFAP157Q5JU67 520 aa12.52□□□□□ -0.41
MSH6-201ENST00000234420 CDC5LQ99459 802 aaKnown RBP12.52□□□□□ -0.41
MSH6-201ENST00000234420 THUMPD2Q9BTF0 503 aaKnown RBP12.52□□□□□ -0.41
MSH6-201ENST00000234420 NACADO15069 1562 aa12.52□□□□□ -0.41
MSH6-201ENST00000234420 ZNF131P52739 623 aa12.52□□□□□ -0.41
MSH6-201ENST00000234420 PDE3AQ14432 1141 aa12.52□□□□□ -0.41
MSH6-201ENST00000234420 Q3C1V9 767 aa12.52□□□□□ -0.41
MSH6-201ENST00000234420 GADL1Q6ZQY3 521 aa12.52□□□□□ -0.41
MSH6-201ENST00000234420 ARFGAP2Q8N6H7 521 aa12.52□□□□□ -0.41
MSH6-201ENST00000234420 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.52□□□□□ -0.41
MSH6-201ENST00000234420 STK32BQ9NY57 414 aa12.52□□□□□ -0.41
MSH6-201ENST00000234420 NSFL1CQ9UNZ2 370 aaKnown RBP12.52□□□□□ -0.41
MSH6-201ENST00000234420 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.52□□□□□ -0.41
MSH6-201ENST00000234420 DMRT2Q9Y5R5 561 aa12.52□□□□□ -0.41
MSH6-201ENST00000234420 POGZQ7Z3K3 1410 aa12.52□□□□□ -0.41
MSH6-201ENST00000234420 KARSQ15046 597 aaKnown RBP12.52□□□□□ -0.41
MSH6-201ENST00000234420 EXOC6BQ9Y2D4 811 aa12.52□□□□□ -0.41
MSH6-201ENST00000234420 MYCLP12524 364 aaPredicted RBP12.51□□□□□ -0.41
MSH6-201ENST00000234420 SYT10Q6XYQ8 523 aa12.51□□□□□ -0.41
MSH6-201ENST00000234420 FAF1Q9UNN5 650 aaPredicted RBP12.51□□□□□ -0.41
MSH6-201ENST00000234420 NIP7Q9Y221 180 aaKnown RBP eCLIP12.51□□□□□ -0.41
MSH6-201ENST00000234420 ERCC5P28715 1186 aaPredicted RBP12.51□□□□□ -0.41
MSH6-201ENST00000234420 RNF10Q8N5U6 811 aaKnown RBP12.51□□□□□ -0.41
MSH6-201ENST00000234420 PAGR1Q9BTK6 254 aa12.51□□□□□ -0.41
MSH6-201ENST00000234420 IFI16Q16666 785 aaKnown RBP12.51□□□□□ -0.41
MSH6-201ENST00000234420 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.51□□□□□ -0.41
MSH6-201ENST00000234420 PPFIA2O75334 1257 aa12.51□□□□□ -0.41
MSH6-201ENST00000234420 CETN1Q12798 172 aa12.51□□□□□ -0.41
MSH6-201ENST00000234420 PDCD7Q8N8D1 485 aaKnown RBP12.51□□□□□ -0.41
MSH6-201ENST00000234420 C8orf76Q96K31 380 aa12.51□□□□□ -0.41
MSH6-201ENST00000234420 MAK16Q9BXY0 300 aaKnown RBP12.51□□□□□ -0.41
MSH6-201ENST00000234420 RAB34Q9BZG1 259 aa12.51□□□□□ -0.41
MSH6-201ENST00000234420 CTNNA3Q9UI47 895 aa12.51□□□□□ -0.41
MSH6-201ENST00000234420 PTPDC1A2A3K4 754 aa12.51□□□□□ -0.41
MSH6-201ENST00000234420 N4BP3O15049 544 aa12.51□□□□□ -0.41
MSH6-201ENST00000234420 SMARCC2Q8TAQ2 1214 aa12.51□□□□□ -0.41
MSH6-201ENST00000234420 RTCBQ9Y3I0 505 aaKnown RBP12.51□□□□□ -0.41
MSH6-201ENST00000234420 OPHN1O60890 802 aa12.5□□□□□ -0.41
MSH6-201ENST00000234420 GMNNO75496 209 aa12.5□□□□□ -0.41
MSH6-201ENST00000234420 ANO6Q4KMQ2 910 aa12.5□□□□□ -0.41
MSH6-201ENST00000234420 ZC3H12CQ9C0D7 883 aaKnown RBP12.5□□□□□ -0.41
MSH6-201ENST00000234420 KRT5P13647 590 aa12.5□□□□□ -0.41
MSH6-201ENST00000234420 LDHAL6AQ6ZMR3 332 aa12.5□□□□□ -0.41
MSH6-201ENST00000234420 STK38LQ9Y2H1 464 aa12.5□□□□□ -0.41
MSH6-201ENST00000234420 FRMD4BQ9Y2L6 1034 aa12.5□□□□□ -0.41
MSH6-201ENST00000234420 CHMP2AO43633 222 aa12.5□□□□□ -0.41
MSH6-201ENST00000234420 PPP2R5AQ15172 486 aa12.5□□□□□ -0.41
MSH6-201ENST00000234420 CCDC7Q96M83 1385 aa12.5□□□□□ -0.41
MSH6-201ENST00000234420 KRT32Q14532 448 aa12.5□□□□□ -0.41
MSH6-201ENST00000234420 TMEM67Q5HYA8 995 aa12.5□□□□□ -0.41
MSH6-201ENST00000234420 NUCKS1Q9H1E3 243 aaKnown RBP12.5□□□□□ -0.41
MSH6-201ENST00000234420 SDCCAG8Q86SQ7 713 aaPredicted RBP12.5□□□□□ -0.41
MSH6-201ENST00000234420 MCUR1Q96AQ8 359 aa12.5□□□□□ -0.41
MSH6-201ENST00000234420 SPECC1L-ADORA2AF8WAN1 911 aa12.5□□□□□ -0.41
MSH6-201ENST00000234420 FOXD4Q12950 439 aaPredicted RBP12.5□□□□□ -0.41
MSH6-201ENST00000234420 TBCAO75347 108 aaKnown RBP12.49□□□□□ -0.41
MSH6-201ENST00000234420 RLBP1P12271 317 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 PDE4BQ07343 736 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 CCDC157Q569K6 752 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 PRDM5Q9NQX1 630 aaPredicted RBP12.49□□□□□ -0.41
MSH6-201ENST00000234420 MAP10Q9P2G4 905 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 DAPK3O43293 454 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 HSPA1LP34931 641 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 PPP1R21Q6ZMI0 780 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 SYNDIG1Q9H7V2 258 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 ALDH3A1P30838 453 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 PHLDB2Q86SQ0 1253 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 CCDC89Q8N998 374 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 LZTFL1Q9NQ48 299 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 SYT1P21579 422 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 MUM1Q2TAK8 710 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 MICU3Q86XE3 530 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 METTL13Q8N6R0 699 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 FAM13AO94988 1023 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 CCDC122Q5T0U0 273 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 PARD3BQ8TEW8 1205 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 MAP3K2Q9Y2U5 619 aa12.49□□□□□ -0.41
MSH6-201ENST00000234420 MRRFQ96E11 262 aaKnown RBP12.48□□□□□ -0.41
MSH6-201ENST00000234420 PLIN2Q99541 437 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 GNPATO15228 680 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 CYLC1P35663 651 aaPredicted RBP12.48□□□□□ -0.41
MSH6-201ENST00000234420 VAV2P52735 878 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 PPP2R3AQ06190 1150 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 CCT6BQ92526 530 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 NBPF3Q9H094 633 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 CCT4P50991 539 aaKnown RBP12.48□□□□□ -0.41
MSH6-201ENST00000234420 KLHL40Q2TBA0 621 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 TBC1D5Q92609 795 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 ABCF3Q9NUQ8 709 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 TACC3Q9Y6A5 838 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms