RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 BCAS4Q8TDM0 211 aa16.83■□□□□ 0.28
PTPRA-201ENST00000216877 CALR3Q96L12 384 aaKnown RBP16.83■□□□□ 0.28
PTPRA-201ENST00000216877 FAM135BQ49AJ0 1406 aa16.83■□□□□ 0.28
PTPRA-201ENST00000216877 MTX1Q13505 466 aa16.83■□□□□ 0.28
PTPRA-201ENST00000216877 CCT4P50991 539 aaKnown RBP16.82■□□□□ 0.28
PTPRA-201ENST00000216877 ACTN3Q08043 901 aaPredicted RBP16.82■□□□□ 0.28
PTPRA-201ENST00000216877 ST3GAL1Q11201 340 aa16.82■□□□□ 0.28
PTPRA-201ENST00000216877 CRACR2AQ9BSW2 395 aa16.82■□□□□ 0.28
PTPRA-201ENST00000216877 CD248Q9HCU0 757 aa16.82■□□□□ 0.28
PTPRA-201ENST00000216877 AKAP12Q02952 1782 aa16.82■□□□□ 0.28
PTPRA-201ENST00000216877 COL9A3Q14050 684 aaPredicted RBP16.82■□□□□ 0.28
PTPRA-201ENST00000216877 ZNF569Q5MCW4 686 aa16.82■□□□□ 0.28
PTPRA-201ENST00000216877 FKBP15Q5T1M5 1219 aa16.82■□□□□ 0.28
PTPRA-201ENST00000216877 CPLX2Q6PUV4 134 aaKnown RBP16.82■□□□□ 0.28
PTPRA-201ENST00000216877 BAG1Q99933 345 aaPredicted RBP16.82■□□□□ 0.28
PTPRA-201ENST00000216877 PEX19P40855 299 aa16.82■□□□□ 0.28
PTPRA-201ENST00000216877 CCT2P78371 535 aaKnown RBP16.82■□□□□ 0.28
PTPRA-201ENST00000216877 OTUD6BQ8N6M0 293 aa16.82■□□□□ 0.28
PTPRA-201ENST00000216877 CTCFLQ8NI51 663 aaPredicted RBP16.82■□□□□ 0.28
PTPRA-201ENST00000216877 CLIC6Q96NY7 704 aa16.82■□□□□ 0.28
PTPRA-201ENST00000216877 ATP10DQ9P241 1426 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 TULP1O00294 542 aaPredicted RBP16.81■□□□□ 0.28
PTPRA-201ENST00000216877 EXOC5O00471 708 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 PAX7P23759 505 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 NAA25Q14CX7 972 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 RRS1Q15050 365 aaKnown RBP16.81■□□□□ 0.28
PTPRA-201ENST00000216877 SWT1Q5T5J6 900 aaKnown RBP16.81■□□□□ 0.28
PTPRA-201ENST00000216877 PNKPQ96T60 521 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 UBXN6Q9BZV1 441 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 VEZTQ9HBM0 779 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 CCDC9Q9Y3X0 531 aaKnown RBP16.81■□□□□ 0.28
PTPRA-201ENST00000216877 TTC21AQ8NDW8 1320 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 FANCGO15287 622 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 ZMYND10O75800 440 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 USP28Q96RU2 1077 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.81■□□□□ 0.28
PTPRA-201ENST00000216877 PIK3R4Q99570 1358 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 MYO1FO00160 1098 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 POLR3DP05423 398 aaPredicted RBP16.81■□□□□ 0.28
PTPRA-201ENST00000216877 FAM160A1Q05DH4 1040 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 CREB3L3Q68CJ9 461 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 FAM71BQ8TC56 605 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 SGSM3Q96HU1 749 aa16.81■□□□□ 0.28
PTPRA-201ENST00000216877 EHD4Q9H223 541 aa16.8■□□□□ 0.28
PTPRA-201ENST00000216877 TSPYL4Q9UJ04 414 aa16.8■□□□□ 0.28
PTPRA-201ENST00000216877 USP54Q70EL1 1684 aa16.8■□□□□ 0.28
PTPRA-201ENST00000216877 TMEM232C9JQI7 657 aa16.8■□□□□ 0.28
PTPRA-201ENST00000216877 DPF2Q92785 391 aa16.8■□□□□ 0.28
PTPRA-201ENST00000216877 POLD4Q9HCU8 107 aa16.8■□□□□ 0.28
PTPRA-201ENST00000216877 MRFAP1Q9Y605 127 aa16.8■□□□□ 0.28
PTPRA-201ENST00000216877 ALKQ9UM73 1620 aa16.8■□□□□ 0.28
PTPRA-201ENST00000216877 VWA3AA6NCI4 1184 aa16.8■□□□□ 0.28
PTPRA-201ENST00000216877 KIF5CO60282 957 aa16.8■□□□□ 0.28
PTPRA-201ENST00000216877 CDR1P51861 262 aa16.8■□□□□ 0.28
PTPRA-201ENST00000216877 CLNS1AP54105 237 aaKnown RBP16.8■□□□□ 0.28
PTPRA-201ENST00000216877 VSNL1P62760 191 aa16.8■□□□□ 0.28
PTPRA-201ENST00000216877 MAP3K9P80192 1104 aa16.8■□□□□ 0.28
PTPRA-201ENST00000216877 ODF2LQ9ULJ1 636 aa16.8■□□□□ 0.28
PTPRA-201ENST00000216877 GSCP56915 257 aaPredicted RBP16.79■□□□□ 0.28
PTPRA-201ENST00000216877 BEND6Q5SZJ8 279 aaPredicted RBP16.79■□□□□ 0.28
PTPRA-201ENST00000216877 TOGARAM2Q6ZUX3 1019 aa16.79■□□□□ 0.28
PTPRA-201ENST00000216877 ZEB2O60315 1214 aa16.79■□□□□ 0.28
PTPRA-201ENST00000216877 SKAP2O75563 359 aaPredicted RBP16.79■□□□□ 0.28
PTPRA-201ENST00000216877 RPSAP08865 295 aaKnown RBP16.79■□□□□ 0.28
PTPRA-201ENST00000216877 SCRN1Q12765 414 aa16.79■□□□□ 0.28
PTPRA-201ENST00000216877 RBM43Q6ZSC3 357 aaKnown RBP16.79■□□□□ 0.28
PTPRA-201ENST00000216877 RHPN1Q8TCX5 695 aa16.79■□□□□ 0.28
PTPRA-201ENST00000216877 SCLT1Q96NL6 688 aa16.79■□□□□ 0.28
PTPRA-201ENST00000216877 GBP3Q9H0R5 595 aa16.79■□□□□ 0.28
PTPRA-201ENST00000216877 ZSWIM6Q9HCJ5 1215 aa16.79■□□□□ 0.28
PTPRA-201ENST00000216877 GNL3LQ9NVN8 582 aaKnown RBP16.79■□□□□ 0.28
PTPRA-201ENST00000216877 TTC21BQ7Z4L5 1316 aa16.79■□□□□ 0.28
PTPRA-201ENST00000216877 ATP2C2O75185 946 aa16.79■□□□□ 0.28
PTPRA-201ENST00000216877 FANCLQ9NW38 375 aa16.79■□□□□ 0.28
PTPRA-201ENST00000216877 CTAGE15A4D2H0 777 aa16.78■□□□□ 0.28
PTPRA-201ENST00000216877 CTAGE8P0CG41 777 aa16.78■□□□□ 0.28
PTPRA-201ENST00000216877 ATP8B2P98198 1209 aa16.78■□□□□ 0.28
PTPRA-201ENST00000216877 MAP2K1Q02750 393 aaPredicted RBP16.78■□□□□ 0.28
PTPRA-201ENST00000216877 CTAGE6Q86UF2 777 aa16.78■□□□□ 0.28
PTPRA-201ENST00000216877 CTAGE4Q8IX94 777 aa16.78■□□□□ 0.28
PTPRA-201ENST00000216877 ZNF396Q96N95 335 aaPredicted RBP16.78■□□□□ 0.28
PTPRA-201ENST00000216877 PPP1R42Q7Z4L9 355 aa16.78■□□□□ 0.28
PTPRA-201ENST00000216877 SRGAP1Q7Z6B7 1085 aa16.78■□□□□ 0.28
PTPRA-201ENST00000216877 CD163L1Q9NR16 1453 aa16.78■□□□□ 0.28
PTPRA-201ENST00000216877 CBFA2T2O43439 604 aa16.78■□□□□ 0.28
PTPRA-201ENST00000216877 NEDD9Q14511 834 aa16.78■□□□□ 0.28
PTPRA-201ENST00000216877 E2F5Q15329 346 aa16.78■□□□□ 0.28
PTPRA-201ENST00000216877 MRPS27Q92552 414 aaKnown RBP16.78■□□□□ 0.28
PTPRA-201ENST00000216877 FAM227BQ96M60 508 aa16.78■□□□□ 0.28
PTPRA-201ENST00000216877 CDK19Q9BWU1 502 aa16.78■□□□□ 0.28
PTPRA-201ENST00000216877 SBNO2Q9Y2G9 1366 aa16.77■□□□□ 0.28
PTPRA-201ENST00000216877 SSH2Q76I76 1423 aa16.77■□□□□ 0.28
PTPRA-201ENST00000216877 MON2Q7Z3U7 1717 aa16.77■□□□□ 0.28
PTPRA-201ENST00000216877 ARHGAP6O43182 974 aa16.77■□□□□ 0.28
PTPRA-201ENST00000216877 ANKRD1Q15327 319 aa16.77■□□□□ 0.28
PTPRA-201ENST00000216877 CABS1Q96KC9 395 aa16.77■□□□□ 0.28
PTPRA-201ENST00000216877 A2ML1A8K2U0 1454 aa16.77■□□□□ 0.28
PTPRA-201ENST00000216877 ADGRB2O60241 1585 aa16.77■□□□□ 0.28
PTPRA-201ENST00000216877 ELF1P32519 619 aa16.77■□□□□ 0.27
PTPRA-201ENST00000216877 SULT6B1Q6IMI4 303 aa16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 262.9 ms