RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 PYM1Q9BRP8 204 aaKnown RBP11.79□□□□□ -0.52
VCL-201ENST00000211998 CWC25Q9NXE8 425 aaPredicted RBP11.79□□□□□ -0.52
VCL-201ENST00000211998 SPTLC2O15270 562 aa11.79□□□□□ -0.52
VCL-201ENST00000211998 IDEP14735 1019 aa11.79□□□□□ -0.52
VCL-201ENST00000211998 GNGT1P63211 74 aa11.79□□□□□ -0.52
VCL-201ENST00000211998 TNNC1P63316 161 aa11.79□□□□□ -0.52
VCL-201ENST00000211998 KRT28Q7Z3Y7 464 aa11.79□□□□□ -0.52
VCL-201ENST00000211998 IQCGQ9H095 443 aaKnown RBP11.79□□□□□ -0.52
VCL-201ENST00000211998 IMPACTQ9P2X3 320 aa11.79□□□□□ -0.52
VCL-201ENST00000211998 KDM2BQ8NHM5 1336 aa11.79□□□□□ -0.52
VCL-201ENST00000211998 SLC8A1P32418 973 aa11.79□□□□□ -0.52
VCL-201ENST00000211998 PUS7Q96PZ0 661 aaKnown RBP11.79□□□□□ -0.52
VCL-201ENST00000211998 MYL5Q02045 173 aa11.78□□□□□ -0.52
VCL-201ENST00000211998 NEDD9Q14511 834 aa11.78□□□□□ -0.52
VCL-201ENST00000211998 TCERG1LQ5VWI1 586 aa11.78□□□□□ -0.52
VCL-201ENST00000211998 SPTY2D1Q68D10 685 aaPredicted RBP11.78□□□□□ -0.52
VCL-201ENST00000211998 PPP1R42Q7Z4L9 355 aa11.78□□□□□ -0.52
VCL-201ENST00000211998 CNGA4Q8IV77 575 aa11.78□□□□□ -0.52
VCL-201ENST00000211998 RPRD2Q5VT52 1461 aaKnown RBP11.78□□□□□ -0.52
VCL-201ENST00000211998 IFIT3O14879 490 aaKnown RBP11.78□□□□□ -0.52
VCL-201ENST00000211998 HNRNPH2P55795 449 aaKnown RBP11.78□□□□□ -0.52
VCL-201ENST00000211998 GBP5Q96PP8 586 aa11.78□□□□□ -0.52
VCL-201ENST00000211998 TNNQ9UQP3 1299 aa11.78□□□□□ -0.52
VCL-201ENST00000211998 UBXN1Q04323 297 aa11.78□□□□□ -0.52
VCL-201ENST00000211998 EFCAB13Q8IY85 973 aa11.78□□□□□ -0.52
VCL-201ENST00000211998 TCHPQ9BT92 498 aa11.78□□□□□ -0.52
VCL-201ENST00000211998 LRRC2Q9BYS8 371 aa11.78□□□□□ -0.52
VCL-201ENST00000211998 TPX2Q9ULW0 747 aaKnown RBP11.78□□□□□ -0.52
VCL-201ENST00000211998 STX17P56962 302 aa11.78□□□□□ -0.52
VCL-201ENST00000211998 AMPD3Q01432 767 aa11.78□□□□□ -0.52
VCL-201ENST00000211998 GRIPAP1Q4V328 841 aa11.78□□□□□ -0.52
VCL-201ENST00000211998 ICE2Q659A1 982 aa11.78□□□□□ -0.52
VCL-201ENST00000211998 TRIM68Q6AZZ1 485 aa11.78□□□□□ -0.52
VCL-201ENST00000211998 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.78□□□□□ -0.52
VCL-201ENST00000211998 GIGYF1O75420 1035 aaPredicted RBP11.77□□□□□ -0.52
VCL-201ENST00000211998 ALDH3A1P30838 453 aa11.77□□□□□ -0.52
VCL-201ENST00000211998 RFC1P35251 1148 aaPredicted RBP11.77□□□□□ -0.52
VCL-201ENST00000211998 APBB1IPQ7Z5R6 666 aaPredicted RBP11.77□□□□□ -0.52
VCL-201ENST00000211998 RAB3IL1Q8TBN0 382 aa11.77□□□□□ -0.52
VCL-201ENST00000211998 RALGAPBQ86X10 1494 aa11.77□□□□□ -0.52
VCL-201ENST00000211998 CIB2O75838 187 aa11.77□□□□□ -0.52
VCL-201ENST00000211998 NLRP5P59047 1200 aa11.77□□□□□ -0.52
VCL-201ENST00000211998 SNCBQ16143 134 aa11.77□□□□□ -0.52
VCL-201ENST00000211998 ZNF365Q70YC5 407 aa11.77□□□□□ -0.52
VCL-201ENST00000211998 RNF10Q8N5U6 811 aaKnown RBP11.77□□□□□ -0.52
VCL-201ENST00000211998 BCAS4Q8TDM0 211 aa11.77□□□□□ -0.52
VCL-201ENST00000211998 CLSTN2Q9H4D0 955 aa11.77□□□□□ -0.52
VCL-201ENST00000211998 TTC21AQ8NDW8 1320 aa11.77□□□□□ -0.53
VCL-201ENST00000211998 HGSO14964 777 aaPredicted RBP11.77□□□□□ -0.53
VCL-201ENST00000211998 BAG3O95817 575 aa11.77□□□□□ -0.53
VCL-201ENST00000211998 PDE1CQ14123 709 aaPredicted RBP11.77□□□□□ -0.53
VCL-201ENST00000211998 C8orf74Q6P047 294 aa11.77□□□□□ -0.53
VCL-201ENST00000211998 MAP3K2Q9Y2U5 619 aa11.77□□□□□ -0.53
VCL-201ENST00000211998 RBM8AQ9Y5S9 174 aaKnown RBP11.77□□□□□ -0.53
VCL-201ENST00000211998 LRMPQ12912 555 aa11.77□□□□□ -0.53
VCL-201ENST00000211998 TTF2Q9UNY4 1162 aaKnown RBP11.77□□□□□ -0.53
VCL-201ENST00000211998 RPSAP08865 295 aaKnown RBP11.76□□□□□ -0.53
VCL-201ENST00000211998 UQCRFS1P1P0C7P4 283 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 METAP2P50579 478 aaKnown RBP eCLIP11.76□□□□□ -0.533e-6■■□□□ 14.5
VCL-201ENST00000211998 CADPS2Q86UW7 1296 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 GDAP1L1Q96MZ0 367 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 TRIM4Q9C037 500 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 ACTN2P35609 894 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 PDE4BQ07343 736 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 FBXO31Q5XUX0 539 aaPredicted RBP11.76□□□□□ -0.53
VCL-201ENST00000211998 SND1Q7KZF4 910 aaKnown RBP eCLIP11.76□□□□□ -0.533e-6■■□□□ 14.2
VCL-201ENST00000211998 SLC26A6Q9BXS9 759 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 SNRPA1P09661 255 aaKnown RBP11.76□□□□□ -0.53
VCL-201ENST00000211998 UBA7P41226 1012 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 FANCCQ00597 558 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 SF3A3Q12874 501 aaKnown RBP eCLIP11.76□□□□□ -0.53
VCL-201ENST00000211998 PYCARDQ9ULZ3 195 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 MICU3Q86XE3 530 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 SPATS2Q86XZ4 545 aaKnown RBP11.76□□□□□ -0.53
VCL-201ENST00000211998 SPAG5Q96R06 1193 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 VCX3BQ9H321 246 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 MMRN2Q9H8L6 949 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 ODF2LQ9ULJ1 636 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 ELP1O95163 1332 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 RAD50Q92878 1312 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 ADAMTS2O95450 1211 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 CCT5P48643 541 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 DIXDC1Q155Q3 683 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 Q6ZUG5 572 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.76□□□□□ -0.53
VCL-201ENST00000211998 TBC1D31Q96DN5 1066 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 NGLY1Q96IV0 654 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 JPH2Q9BR39 696 aaPredicted RBP11.76□□□□□ -0.53
VCL-201ENST00000211998 EXOC1Q9NV70 894 aa11.76□□□□□ -0.53
VCL-201ENST00000211998 EFCAB8A8MWE9 144 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 SH2D4BQ5SQS7 431 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 LDHAL6AQ6ZMR3 332 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 CCDC25Q86WR0 208 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 ZBTB3Q9H5J0 574 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 PPANQ9NQ55 473 aaKnown RBP11.75□□□□□ -0.53
VCL-201ENST00000211998 TCP11L1Q9NUJ3 509 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 NKIRAS1Q9NYS0 192 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 MTRF1LQ9UGC7 380 aaKnown RBP11.75□□□□□ -0.53
VCL-201ENST00000211998 ARHGAP6O43182 974 aa11.75□□□□□ -0.53
VCL-201ENST00000211998 SMIM24O75264 130 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms