RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 CRNKL1Q9BZJ0 848 aaKnown RBP6.84□□□□□ -1.31
VPS13D-201ENST00000011700 POLE3Q9NRF9 147 aa6.84□□□□□ -1.31
VPS13D-201ENST00000011700 CNTRLQ7Z7A1 2325 aa6.84□□□□□ -1.32
VPS13D-201ENST00000011700 NBPF6Q5VWK0 638 aa6.84□□□□□ -1.32
VPS13D-201ENST00000011700 NBPF4Q96M43 638 aa6.84□□□□□ -1.32
VPS13D-201ENST00000011700 FRMD4BQ9Y2L6 1034 aa6.84□□□□□ -1.32
VPS13D-201ENST00000011700 THAP12O43422 761 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 SSBP05455 408 aaKnown RBP eCLIP6.83□□□□□ -1.32
VPS13D-201ENST00000011700 MXRA7P84157 204 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 ZNF365Q70YC5 407 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 MRVI1Q9Y6F6 885 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 GOLGA8BA8MQT2 603 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 NSD3Q9BZ95 1437 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 MED4Q9NPJ6 270 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 TRAPPC8Q9Y2L5 1435 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 ADCY5O95622 1261 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 NOX5Q96PH1 765 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 SPC25Q9HBM1 224 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 SMTNP53814 917 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 GDAP1L1Q96MZ0 367 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 RAB17Q9H0T7 212 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 MACROD2A1Z1Q3 448 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 CAPN2P17655 700 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 MAN1A1P33908 653 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 CCDC42Q96M95 316 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 I3L4J1 428 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 N4BP3O15049 544 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 APBA1Q02410 837 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 WHAMMP3Q1A5X7 153 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 ZNF277Q9NRM2 450 aaPredicted RBP6.83□□□□□ -1.32
VPS13D-201ENST00000011700 IGF1RP08069 1367 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 ZNF530Q6P9A1 599 aaPredicted RBP6.83□□□□□ -1.32
VPS13D-201ENST00000011700 PPP1R42Q7Z4L9 355 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 FAM8A1Q9UBU6 413 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 LCMT1Q9UIC8 334 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 CLASP1Q7Z460 1538 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 MAST1Q9Y2H9 1570 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 A0A1B0GVL5 298 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 CUL4BQ13620 913 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 MAK16Q9BXY0 300 aaKnown RBP6.83□□□□□ -1.32
VPS13D-201ENST00000011700 ZMYM4Q5VZL5 1548 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 GNG11P61952 73 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 ATP2B2Q01814 1243 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 ANKLE2Q86XL3 938 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 VPS52Q8N1B4 723 aa6.83□□□□□ -1.32
VPS13D-201ENST00000011700 PLCD1P51178 756 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 METTL24Q5JXM2 366 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 HAUS3Q68CZ6 603 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 CEP120Q8N960 986 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 ERICH4A6NGS2 130 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 F8W8V4 182 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 METAP2P50579 478 aaKnown RBP eCLIP6.82□□□□□ -1.32
VPS13D-201ENST00000011700 YWHAEP62258 255 aaKnown RBP6.82□□□□□ -1.32
VPS13D-201ENST00000011700 CEBPZQ03701 1054 aaKnown RBP6.82□□□□□ -1.32
VPS13D-201ENST00000011700 ARHGEF6Q15052 776 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 SCLT1Q96NL6 688 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 ECHDC1Q9NTX5 307 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 NEDD9Q14511 834 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 CNNM4Q6P4Q7 775 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 RAB11FIP4Q86YS3 637 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 SMAP1Q8IYB5 467 aaPredicted RBP6.82□□□□□ -1.32
VPS13D-201ENST00000011700 TRIM47Q96LD4 638 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 CABP5Q9NP86 173 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 EPS15L1Q9UBC2 864 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 SPDYE3A6NKU9 549 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 SEL1L2Q5TEA6 688 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 EP400NLQ6ZTU2 488 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 INTS8Q75QN2 995 aaKnown RBP6.82□□□□□ -1.32
VPS13D-201ENST00000011700 EDEM3Q9BZQ6 932 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 NAA16Q6N069 864 aaPredicted RBP6.82□□□□□ -1.32
VPS13D-201ENST00000011700 PHLDB3Q6NSJ2 640 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 C16orf71Q8IYS4 520 aaPredicted RBP6.82□□□□□ -1.32
VPS13D-201ENST00000011700 ZNF713Q8N859 430 aaPredicted RBP6.82□□□□□ -1.32
VPS13D-201ENST00000011700 BICD1Q96G01 975 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 ATP6V0A2Q9Y487 856 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 ARHGAP4P98171 946 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 NBPF8Q3BBV2 869 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 KAT14Q9H8E8 782 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 ZKSCAN5Q9Y2L8 839 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 MYH13Q9UKX3 1938 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 SLFN5Q08AF3 891 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 TRPM2O94759 1503 aa6.82□□□□□ -1.32
VPS13D-201ENST00000011700 PSDA5PKW4 1024 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 CCDC125Q86Z20 511 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 IQUBQ8NA54 791 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 TYW1Q9NV66 732 aaKnown RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 ANKIB1Q9P2G1 1089 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 TPD52P55327 224 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 GBP7Q8N8V2 638 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 NEK11Q8NG66 645 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 VTI1AQ96AJ9 217 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 CCDC51Q96ER9 411 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 NRBF2Q96F24 287 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 MAP2P11137 1827 aaKnown RBP6.81□□□□□ -1.32
VPS13D-201ENST00000011700 SSH2Q76I76 1423 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 ATP2B1P20020 1258 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 GOLGA5Q8TBA6 731 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 FLOT1O75955 427 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 PHBP35232 272 aa6.81□□□□□ -1.32
VPS13D-201ENST00000011700 RBM5P52756 815 aaKnown RBP eCLIP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms