RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 KRTDAPP60985 99 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 DLK1P80370 383 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 PSG6Q00889 435 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 BAXQ07812 192 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 DRAM2Q6UX65 266 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 TOMM20LQ6UXN7 152 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 OR5AS1Q8N127 324 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-203ENST00000547825 ASB5Q8WWX0 329 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 HIST1H2BAQ96A08 127 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 BTF3L4Q96K17 158 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 GGACTQ9BVM4 153 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 REG4Q9BYZ8 158 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 CALHM2Q9HA72 323 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 DOK5Q9P104 306 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 KCNE5Q9UJ90 142 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 MMP17Q9ULZ9 603 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 TMEM184BQ9Y519 407 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-203ENST00000547825 DSPP15924 2871 aaKnown RBP4.8□□□□□ -1.64
LIMA1-203ENST00000547825 NSG1A0A0A6YYJ2 146 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 IGKV1-8A0A0C4DH67 115 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 TRBV11-1A0A0K0K1C0 115 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 A0A1W2PPV9 198 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 H3BQ15 152 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 FGF7P21781 194 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 GAMTQ14353 236 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 TMEM52BQ4KMG9 183 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 MESTQ5EB52 335 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 ASCL5Q7RTU5 278 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 LYZL2Q7Z4W2 148 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 SLC25A42Q86VD7 318 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 ZSCAN4Q8NAM6 433 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-203ENST00000547825 LFNGQ8NES3 379 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 OR13D1Q8NGV5 346 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 GFI1Q99684 422 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 HDHD3Q9BSH5 251 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-203ENST00000547825 ARV1Q9H2C2 271 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 PLEKHA2Q9HB19 425 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 PLEKHA3Q9HB20 300 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 FAM60AQ9NP50 221 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 CUTCQ9NTM9 273 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 HAO2Q9NYQ3 351 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 H0YL77 283 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 OTX2P32243 289 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 RUNX1Q01196 453 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 DHODHQ02127 395 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 NSUN5P2Q63ZY6 315 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 ZDHHC22Q8N966 263 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 OR2AE1Q8NHA4 323 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 DYRK2Q92630 601 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 TMEM18Q96B42 140 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 OR10C1Q96KK4 312 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 BMFQ96LC9 184 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 LINC00615Q96LM1 132 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-203ENST00000547825 CMTM3Q96MX0 182 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 OR2A5Q96R48 311 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 TXNIPQ9H3M7 391 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 TMEM140Q9NV12 185 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 NECAP2Q9NVZ3 263 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 PPP1R3CQ9UQK1 317 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 CBY1Q9Y3M2 126 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 DOCK7Q96N67 2140 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 SEC14L6B5MCN3 397 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 ZNHIT1O43257 154 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 CLN5O75503 358 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 NKX2-2O95096 273 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 HLA-DOBP13765 273 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 HIST1H1DP16402 221 aaKnown RBP4.79□□□□□ -1.64
LIMA1-203ENST00000547825 BCKDHBP21953 392 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 AADACP22760 399 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 PLP2Q04941 152 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 PRICKLE4Q2TBC4 344 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 NCR3LG1Q68D85 454 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 KCNIP4Q6PIL6 250 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 DGAT2L6Q6ZPD8 337 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 PLXDC1Q8IUK5 500 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 MKXQ8IYA7 352 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 ARRDC1Q8N5I2 433 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 PSMF1Q92530 271 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 MR1Q95460 341 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 C8orf44Q96CB5 159 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 SAT2Q96F10 170 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-203ENST00000547825 LOXL4Q96JB6 756 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 RARRES2Q99969 163 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 LYRM4Q9HD34 91 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 RAB18Q9NP72 206 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 RCC2Q9P258 522 aaKnown RBP4.79□□□□□ -1.64
LIMA1-203ENST00000547825 OR5H15A6NDH6 313 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 ANKUB1A6NFN9 424 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 OR5H1A6NKK0 313 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 CLDN34H7C241 214 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 TBX19O60806 448 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 PATE4P0C8F1 98 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 PPP1CCP36873 323 aaKnown RBP4.79□□□□□ -1.64
LIMA1-203ENST00000547825 CD200P41217 278 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 KIR3DL2P43630 455 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 PSMB3P49720 205 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 GFERP55789 205 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 TMEM267Q0VDI3 215 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-203ENST00000547825 FOXO1Q12778 655 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms