RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 ARHGEF17Q96PE2 2063 aaPredicted RBP6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 ST8SIA3O43173 380 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 PDGFBP01127 241 aaPredicted RBP6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF43P17038 809 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 IGFBP3P17936 291 aaPredicted RBP6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 CBLN1P23435 193 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 GFRA1P56159 465 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 SOX8P57073 446 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 GNMTQ14749 295 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 ZIC1Q15915 447 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 ATP6V1FQ16864 119 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 TMEM41BQ5BJD5 291 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF787Q6DD87 383 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 OR2C3Q8N628 320 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 PLPPR1Q8TBJ4 325 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 RNASEH2CQ8TDP1 164 aaKnown RBP6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 OR5B12Q96R08 314 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 PLK3Q9H4B4 646 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 IL21Q9HBE4 155 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 SDF2L1Q9HCN8 221 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 VAX2Q9UIW0 290 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 DAPP1Q9UN19 280 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 OSGIN2Q9Y236 505 aa6.32□□□□□ -1.4
LIMCH1-207ENST00000508466 A6NCN8 305 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 TNFRSF10CO14798 259 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 SLC31A1O15431 190 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF207O43670 478 aaKnown RBP6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 B3GALT2O43825 422 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 CD1AP06126 327 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 IAPPP10997 89 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF823P16415 610 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 PMCHP20382 165 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 SLC6A8P48029 635 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 CNN1P51911 297 aaKnown RBP6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 SSBP1Q04837 148 aaKnown RBP6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 METRNLQ641Q3 311 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 C16orf47Q6ZP98 133 aaPredicted RBP6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 DTX1Q86Y01 620 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 UBALD1Q8TB05 177 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 ZCCHC14Q8WYQ9 949 aaKnown RBP6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 LINC00615Q96LM1 132 aaPredicted RBP6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 TBL1XR1Q9BZK7 514 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 SRD5A3Q9H8P0 318 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 G6PC2Q9NQR9 355 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 ADAM29Q9UKF5 820 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 DSPP15924 2871 aaKnown RBP6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 E9PLN8 166 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 SPRY1O43609 319 aaPredicted RBP6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 CHST1O43916 411 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 PFN1P07737 140 aaKnown RBP6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 HOXB2P14652 356 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 CDKN1BP46527 198 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 PPOXP50336 477 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 RPS18P62269 152 aaKnown RBP6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 RELBQ01201 579 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 TPTE2P1Q5T6R2 138 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 KCNG3Q8TAE7 436 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 SOCS4Q8WXH5 440 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF558Q96NG5 402 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 RNF2Q99496 336 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 DERL1Q9BUN8 251 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF552Q9H707 407 aaPredicted RBP6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 GPR35Q9HC97 309 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 SLC2A9Q9NRM0 540 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 PLEKHJ1Q9NW61 149 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 KIAA1456Q9P272 454 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 POLR1DQ9Y2S0 133 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 TIMM8BQ9Y5J9 83 aaPredicted RBP6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 A0A087WWC5 75 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 B4DGG1 531 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 H7C4K7 107 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 SIRPB1O00241 398 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 SERF1AO75920 110 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 CDS2O95674 445 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 TTRP02766 147 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 NTF3P20783 257 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 CD81P60033 236 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 QRFPP83859 136 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 PRICKLE4Q2TBC4 344 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 SPATA45Q537H7 98 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF542PQ5EBM4 170 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 SLC25A26Q70HW3 274 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 GRINAQ7Z429 371 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 BAGE3Q86Y29 109 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 BAGE2Q86Y30 109 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 UEVLDQ8IX04 471 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 SLC22A24Q8N4F4 322 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 TMEM252Q8N6L7 170 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 OR4F5Q8NH21 305 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 HLA-CQ95604 372 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 C8orf44Q96CB5 159 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF501Q96CX3 271 aaPredicted RBP6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 SLAMF6Q96DU3 332 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 OR4F4Q96R69 305 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 MCRIP2Q9BUT9 160 aaKnown RBP6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 GAL3ST2Q9H3Q3 398 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 TMEM9BQ9NQ34 198 aa6.31□□□□□ -1.4
LIMCH1-207ENST00000508466 STRAPQ9Y3F4 350 aaKnown RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 195.3 ms