RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-205	ENST00000417040	PRSS1	P07477	247 aa		10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	CEBPD	P49716	269 aa	Predicted RBP	10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	RPS23	P62266	143 aa	Known RBP	10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	RHOB	P62745	196 aa		10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	ZNF385C	Q66K41	422 aa	Predicted RBP	10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	WFIKKN1	Q96NZ8	548 aa		10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	KLHDC2	Q9Y2U9	406 aa		10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	NPTN	Q9Y639	398 aa		10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	C5orf52	A6NGY3	159 aa		10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	SRSF10	O75494	262 aa	Known RBP	10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	CD226	Q15762	336 aa		10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	D2HGDH	Q8N465	521 aa		10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	KLF13	Q9Y2Y9	288 aa	Predicted RBP	10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	SCN7A	Q01118	1682 aa		10.64	□□□□□ -0.71
UBR4-205	ENST00000417040		A0A1W2PPC4	97 aa		10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	CTSD	P07339	412 aa	Predicted RBP	10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	TMEM255A	Q5JRV8	349 aa		10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	ANKRD37	Q7Z713	158 aa		10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	ZAR1	Q86SH2	424 aa		10.64	□□□□□ -0.71
UBR4-205	ENST00000417040	MFNG	O00587	321 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	TNFSF15	O95150	251 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	FAM87A	P0C7U9	286 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	UBE2V2	Q15819	145 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	HIST3H3	Q16695	136 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	MAP1LC3C	Q9BXW4	147 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	TGIF2-C20orf24	A0A0A6YYL0	155 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	SNURFL	B1AK76	121 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	PDCD6	O75340	191 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	CFD	P00746	253 aa	Predicted RBP	10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	FBP1	P09467	338 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	KLK2	P20151	261 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	OR4F17	Q8NGA8	305 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	SMIM12	Q96EX1	92 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	IGLV3-16	A0A075B6K0	115 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	SEMA7A	O75326	666 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	GABRA6	Q16445	453 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	ZNF362	Q5T0B9	420 aa	Predicted RBP	10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	JMJD6	Q6NYC1	403 aa	Predicted RBP	10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	ZNF547	Q8IVP9	402 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	SLC26A10	Q8NG04	563 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	OR2D3	Q8NGH3	330 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	MANBAL	Q9NQG1	85 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	ANXA10	Q9UJ72	324 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	RREB1	Q92766	1687 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	LYZL6	O75951	148 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	TRGC2	P03986	189 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	HLA-G	P17693	338 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	IL24	Q13007	206 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	OR2M5	A3KFT3	312 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	HINT1	P49773	126 aa	Predicted RBP	10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	C3AR1	Q16581	482 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	KISS1R	Q969F8	398 aa	Predicted RBP	10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	OR2A5	Q96R48	311 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	VAX2	Q9UIW0	290 aa		10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	MRPS18B	Q9Y676	258 aa	Known RBP	10.63	□□□□□ -0.71
UBR4-205	ENST00000417040	IGHV3-21	A0A0B4J1V1	117 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	CENPVL1	A0A0U1RR11	272 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	APCS	P02743	223 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	WNT5A	P41221	380 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	UBE2L3	P68036	154 aa	Known RBP	10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	CPEB3	Q8NE35	698 aa	Known RBP	10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	SH2D2A	Q9NP31	389 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	TNFSF18	Q9UNG2	199 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	PDE4DIP	Q5VU43	2346 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	TTC3	P53804	2025 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	OR1C1	Q15619	314 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	RCC2	Q9P258	522 aa	Known RBP	10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	TRDC	B7Z8K6	153 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	CYR61	O00622	381 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	FGF2	P09038	288 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	PSG2	P11465	335 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	RUNX1	Q01196	453 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	NSUN5P2	Q63ZY6	315 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	WDR73	Q6P4I2	378 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	SSX8	Q7RTT4	187 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	LRRC29	Q8WV35	223 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	MRGPRF	Q96AM1	343 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	AP5S1	Q9NUS5	200 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	SYNGR2	O43760	224 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	RPS4Y1	P22090	263 aa	Known RBP	10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	TMEM50B	P56557	158 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	OR4A47	Q6IF82	309 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	ARL6IP6	Q8N6S5	226 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	LRRC75A	Q8NAA5	344 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	RARRES2	Q99969	163 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	FSCN3	Q9NQT6	498 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	SERTM1	A2A2V5	107 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	CRX	O43186	299 aa	Predicted RBP	10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	VMA21	Q3ZAQ7	101 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	MRGPRX3	Q96LB0	322 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	RBM14	Q96PK6	669 aa	Known RBP	10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	TNFRSF19	Q9NS68	423 aa		10.62	□□□□□ -0.71
UBR4-205	ENST00000417040	BTAF1	O14981	1849 aa		10.61	□□□□□ -0.71
UBR4-205	ENST00000417040	MFSD2B	A6NFX1	497 aa		10.61	□□□□□ -0.71
UBR4-205	ENST00000417040	MBP	P02686	304 aa	Predicted RBP	10.61	□□□□□ -0.71
UBR4-205	ENST00000417040	FAM157C	P0CG43	387 aa		10.61	□□□□□ -0.71
UBR4-205	ENST00000417040	COX7A1	P24310	79 aa		10.61	□□□□□ -0.71
UBR4-205	ENST00000417040	CD40	P25942	277 aa		10.61	□□□□□ -0.71
UBR4-205	ENST00000417040	COMP	P49747	757 aa	Predicted RBP	10.61	□□□□□ -0.71
UBR4-205	ENST00000417040	RAB7A	P51149	207 aa		10.61	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms