RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 WNT9BO14905 357 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 NOS1APO75052 506 aaPredicted RBP11.33□□□□□ -0.6
HMGB1-202ENST00000339872 ZNF205O95201 554 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 OR2H2O95918 312 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 GSTT2P0CG29 244 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 PGAM2P15259 253 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 ZBTB25P24278 435 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 ERP29P30040 261 aaKnown RBP11.33□□□□□ -0.6
HMGB1-202ENST00000339872 TAS2R31P59538 309 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 IL13RA1P78552 427 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 HOXA4Q00056 320 aaPredicted RBP11.33□□□□□ -0.6
HMGB1-202ENST00000339872 BSPH1Q075Z2 132 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 RBM39Q14498 530 aaKnown RBP11.33□□□□□ -0.6
HMGB1-202ENST00000339872 C2orf68Q2NKX9 166 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 FAHD2BQ6P2I3 314 aaPredicted RBP11.33□□□□□ -0.6
HMGB1-202ENST00000339872 C11orf88Q6PI97 169 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 FIP1L1Q6UN15 594 aaKnown RBP11.33□□□□□ -0.6
HMGB1-202ENST00000339872 PEG10Q86TG7 708 aaKnown RBP11.33□□□□□ -0.6
HMGB1-202ENST00000339872 ELMOD3Q96FG2 381 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 FAHD2AQ96GK7 314 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 TMPRSS13Q9BYE2 586 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 MRPL37Q9BZE1 423 aaKnown RBP11.33□□□□□ -0.6
HMGB1-202ENST00000339872 ATRXP46100 2492 aa11.33□□□□□ -0.6
HMGB1-202ENST00000339872 C9orf170A2RU37 121 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 DPRXA6NFQ7 191 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 ACAA1P09110 424 aaPredicted RBP11.32□□□□□ -0.6
HMGB1-202ENST00000339872 CD34P28906 385 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 ASCL1P50553 236 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 SELENOVP59797 346 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 PAN3Q58A45 887 aaKnown RBP11.32□□□□□ -0.6
HMGB1-202ENST00000339872 SPIN3Q5JUX0 258 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 SSX8Q7RTT4 187 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 OR2T35Q8NGX2 323 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 HES4Q9HCC6 221 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 Q9N2K0 584 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 C1orf123Q9NWV4 160 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 TAAR3PQ9P1P4 343 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 OR14J1Q9UGF5 321 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 FAM90A27PA6NNH2 459 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 SH2D1BO14796 132 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 SLC22A5O76082 557 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 SIX6O95475 246 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 GLRA1P23415 457 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 ZNF146Q15072 292 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 ZNF660Q6AZW8 331 aaPredicted RBP11.32□□□□□ -0.6
HMGB1-202ENST00000339872 NUP37Q8NFH4 326 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 CASTOR1Q8WTX7 329 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 HYLS1Q96M11 299 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 WFIKKN1Q96NZ8 548 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 TRAF4Q9BUZ4 470 aaPredicted RBP11.32□□□□□ -0.6
HMGB1-202ENST00000339872 LIME1Q9H400 295 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 RANBP3Q9H6Z4 567 aaPredicted RBP11.32□□□□□ -0.6
HMGB1-202ENST00000339872 BOLA1Q9Y3E2 137 aa11.32□□□□□ -0.6
HMGB1-202ENST00000339872 TMEM8BA6NDV4 472 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 SLC33A1O00400 549 aaPredicted RBP11.31□□□□□ -0.6
HMGB1-202ENST00000339872 SPRY3O43610 288 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 GLAP06280 429 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 GIPP09681 153 aaPredicted RBP11.31□□□□□ -0.6
HMGB1-202ENST00000339872 PPP3CBP16298 524 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 CHRNB4P30926 498 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 RBMXP38159 391 aaKnown RBP11.31□□□□□ -0.6
HMGB1-202ENST00000339872 CD200P41217 278 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 CEBPDP49716 269 aaPredicted RBP11.31□□□□□ -0.6
HMGB1-202ENST00000339872 H2BFSP57053 126 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 SURF2Q15527 256 aaPredicted RBP11.31□□□□□ -0.6
HMGB1-202ENST00000339872 TMEM128Q5BJH2 165 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 TMEM185AQ8NFB2 350 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 MRPL30Q8TCC3 161 aaKnown RBP11.31□□□□□ -0.6
HMGB1-202ENST00000339872 MRPL24Q96A35 216 aaKnown RBP11.31□□□□□ -0.6
HMGB1-202ENST00000339872 TMEM230Q96A57 120 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 OR2V2Q96R30 315 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 RTBDNQ9BSG5 229 aaPredicted RBP11.31□□□□□ -0.6
HMGB1-202ENST00000339872 PLSCR3Q9NRY6 295 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 PIPOXQ9P0Z9 390 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 HAND1O96004 215 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 DNASE1P24855 282 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 FCGR2CP31995 323 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 ECI1P42126 302 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 GLP1RP43220 463 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 IGSF11Q5DX21 431 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 LIN54Q6MZP7 749 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 ACP7Q6ZNF0 438 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 Q6ZS49 121 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 C5orf24Q7Z6I8 188 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 ZBTB8BQ8NAP8 495 aaPredicted RBP11.31□□□□□ -0.6
HMGB1-202ENST00000339872 LRRC29Q8WV35 223 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 TOMM40LQ969M1 308 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 RIMS4Q9H426 269 aaPredicted RBP11.31□□□□□ -0.6
HMGB1-202ENST00000339872 COQ3Q9NZJ6 369 aa11.31□□□□□ -0.6
HMGB1-202ENST00000339872 C14orf166Q9Y224 244 aaKnown RBP11.31□□□□□ -0.6
HMGB1-202ENST00000339872 POLEQ07864 2286 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 FXYD4P59646 89 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 SRSF7Q16629 238 aaKnown RBP eCLIP11.3□□□□□ -0.61e-10■■■■□ 20
HMGB1-202ENST00000339872 DCAF12L2Q5VW00 463 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 ADAM5Q6NVV9 412 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 DHRS11Q6UWP2 260 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 C20orf204Q6ZNR8 217 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 MITD1Q8WV92 249 aa11.3□□□□□ -0.6
HMGB1-202ENST00000339872 WDR89Q96FK6 387 aaPredicted RBP11.3□□□□□ -0.6
HMGB1-202ENST00000339872 PHB2Q99623 299 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 113.3 ms