RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 LAMP3Q9UQV4 416 aa11.22□□□□□ -0.61
SFSWAP-209ENST00000540469 XKRY2A2RUG3 117 aa11.21□□□□□ -0.61
SFSWAP-209ENST00000540469 TGOLN2O43493 480 aa11.21□□□□□ -0.61
SFSWAP-209ENST00000540469 HLA-HP01893 362 aa11.21□□□□□ -0.61
SFSWAP-209ENST00000540469 LINC00271P0C7V0 271 aa11.21□□□□□ -0.61
SFSWAP-209ENST00000540469 FAM89BQ8N5H3 189 aa11.21□□□□□ -0.61
SFSWAP-209ENST00000540469 RAB24Q969Q5 203 aa11.21□□□□□ -0.61
SFSWAP-209ENST00000540469 PLA2G2FQ9BZM2 168 aa11.21□□□□□ -0.61
SFSWAP-209ENST00000540469 WWTR1Q9GZV5 400 aa11.21□□□□□ -0.61
SFSWAP-209ENST00000540469 A6NNC1 897 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 A8MWP6 167 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 H3BP45 60 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 SPRY1O43609 319 aaPredicted RBP11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 NUTF2P61970 127 aaKnown RBP11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 JOSD1Q15040 202 aaPredicted RBP11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 THEM4Q5T1C6 240 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 THNSL2Q86YJ6 484 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 SPIN2AQ99865 258 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 SPIN2BQ9BPZ2 258 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 MRPL37Q9BZE1 423 aaKnown RBP11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 IGFLR1Q9H665 355 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 GPR173Q9NS66 373 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 B4DEV8 164 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 IFNA5P01569 189 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 TLE1Q04724 770 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 ZNF506Q5JVG8 444 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 WDR25Q64LD2 544 aaPredicted RBP11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 ZNF66Q6ZN08 573 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 TMEM183AQ8IXX5 376 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 OR10A7Q8NGE5 316 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 DTD1Q8TEA8 209 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 ZNF721Q8TF20 911 aa11.21□□□□□ -0.62
SFSWAP-209ENST00000540469 SPEGQ15772 3267 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 CEBPZOSA8MTT3 80 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 TSPAN2O60636 221 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 CNOT4O95628 575 aaKnown RBP11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 GZMBP10144 247 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 ANOS1P23352 680 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 FOXF1Q12946 379 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 PDCD1Q15116 288 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 RSPO4Q2I0M5 234 aaPredicted RBP11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 TMEM252Q8N6L7 170 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 TPSD1Q9BZJ3 242 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 LIME1Q9H400 295 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 KLRF1Q9NZS2 232 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 IL17BQ9UHF5 180 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 A0A1W2PQD3 144 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 DVL1O14640 695 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 DDAH2O95865 285 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 SCGB1D1O95968 90 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 ZNF43P17038 809 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 PRSS12P56730 875 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 OR5B12Q96R08 314 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 METTL9Q9H1A3 318 aa11.2□□□□□ -0.62
SFSWAP-209ENST00000540469 PITX3O75364 302 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 CYB5R3P00387 301 aaPredicted RBP11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 AMBPP02760 352 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 EPHA1P21709 976 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 FGF8P55075 233 aaPredicted RBP11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 ZNF154Q13106 437 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 PMS2P11Q13670 270 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 DNLZQ5SXM8 178 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 LANCL3Q6ZV70 420 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 ZNF286AQ9HBT8 521 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 MMACHCQ9Y4U1 282 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 IGHV3-20A0A0C4DH32 117 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 A0A1W2PNR3 127 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 C5orf63A6NC05 138 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 PPP5D1E7EU14 171 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 RPL36A-HNRNPH2H7BZ11 118 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 OPN1MWP04001 364 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 OPN1MW2P0DN77 364 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 OPN1MW3P0DN78 364 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 ZNF17P17021 662 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 KIR2DL1P43626 348 aaPredicted RBP11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 GNG10P50151 68 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 ZNF41P51814 821 aaPredicted RBP11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 GFERP55789 205 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 ZNF787Q6DD87 383 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 BATF2Q8N1L9 274 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 NOXO1Q8NFA2 376 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 OR1P1Q8NH06 330 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 CLDND2Q8NHS1 167 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 TMEM37Q8WXS4 190 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 ZNF442Q9H7R0 627 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 CBLN4Q9NTU7 201 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 MUC22E2RYF6 1773 aaPredicted RBP11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 ERVS71-1P61550 626 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 CLN3Q13286 438 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 CXorf66Q5JRM2 361 aaPredicted RBP11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 IL22RA1Q8N6P7 574 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 OR4X1Q8NH49 305 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 SCGB1C1Q8TD33 95 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 TMEM171Q8WVE6 324 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 RIMS4Q9H426 269 aaPredicted RBP11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 ZNF665Q9H7R5 613 aa11.19□□□□□ -0.62
SFSWAP-209ENST00000540469 MKRN2OSH3BPM6 223 aa11.18□□□□□ -0.62
SFSWAP-209ENST00000540469 RRP8O43159 456 aaKnown RBP11.18□□□□□ -0.62
SFSWAP-209ENST00000540469 ADAM20O43506 726 aa11.18□□□□□ -0.62
SFSWAP-209ENST00000540469 PGA3P0DJD8 388 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms