RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 IGLL5B9A064 214 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 RGS16O15492 202 aaPredicted RBP2.6□□□□□ -1.99
VPS13A-210ENST00000471439 ZNF861PO60384 105 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 TPST2O60704 377 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 IGHG4P01861 327 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 ALDOBP05062 364 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 SERPINA6P08185 405 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 CT62P0C5K7 136 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 OR8G3PP0DMU2 310 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 IMPA1P29218 277 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 MIPP30301 263 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 SLC6A1P30531 599 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 UBE2NP61088 152 aaKnown RBP2.6□□□□□ -1.99
VPS13A-210ENST00000471439 TBPL1P62380 186 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 HMGN5P82970 282 aaKnown RBP2.6□□□□□ -1.99
VPS13A-210ENST00000471439 ACVR1Q04771 509 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 TMED2Q15363 201 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 DPYSL2Q16555 572 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 CFAP157Q5JU67 520 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 CCDC122Q5T0U0 273 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 ATAD3BQ5T9A4 648 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 CPTPQ5TA50 214 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 RSBN1Q5VWQ0 802 aaPredicted RBP2.6□□□□□ -1.99
VPS13A-210ENST00000471439 STEAP4Q687X5 459 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 NCBP2-AS2Q69YL0 99 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 ACP7Q6ZNF0 438 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 ACOT7LQ6ZUV0 252 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 ZNF767PQ75MW2 155 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 VMO1Q7Z5L0 202 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 LYG2Q86SG7 212 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 PSTKQ8IV42 348 aaKnown RBP2.6□□□□□ -1.99
VPS13A-210ENST00000471439 ST13P4Q8IZP2 240 aaPredicted RBP2.6□□□□□ -1.99
VPS13A-210ENST00000471439 GTPBP8Q8N3Z3 284 aaPredicted RBP2.6□□□□□ -1.99
VPS13A-210ENST00000471439 FAM71E2Q8N5Q1 922 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 OR2L5Q8NG80 312 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 TRMT10AQ8TBZ6 339 aaKnown RBP2.6□□□□□ -1.99
VPS13A-210ENST00000471439 C10orf82Q8WW14 230 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 GEMIN6Q8WXD5 167 aaKnown RBP2.6□□□□□ -1.99
VPS13A-210ENST00000471439 EMG1Q92979 244 aaKnown RBP2.6□□□□□ -1.99
VPS13A-210ENST00000471439 LLPHQ9BRT6 129 aaKnown RBP2.6□□□□□ -1.99
VPS13A-210ENST00000471439 ISYNA1Q9NPH2 558 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 TMEM106BQ9NUM4 274 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 CLN8Q9UBY8 286 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 TMCC3Q9ULS5 477 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 RPH3ALQ9UNE2 315 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 IFT52Q9Y366 437 aa2.6□□□□□ -1.99
VPS13A-210ENST00000471439 ARPC4-TTLL3A0A0A6YYG9 625 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 OR51F1A6NGY5 319 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 ACOX3O15254 700 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 MAGEB3O15480 346 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 SNNO75324 88 aaPredicted RBP2.59□□□□□ -1.99
VPS13A-210ENST00000471439 MRPL33O75394 65 aaKnown RBP2.59□□□□□ -1.99
VPS13A-210ENST00000471439 PSIP1O75475 530 aaKnown RBP2.59□□□□□ -1.99
VPS13A-210ENST00000471439 MMP23AO75900 390 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 LGI1O95970 557 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 LALBAP00709 142 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 AGTP01019 485 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 IGHV1-46P01743 117 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 CBR1P16152 277 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 ATP6V1B2P21281 511 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 HIST1H1TP22492 207 aaPredicted RBP2.59□□□□□ -1.99
VPS13A-210ENST00000471439 CEBPDP49716 269 aaPredicted RBP2.59□□□□□ -1.99
VPS13A-210ENST00000471439 APOC4P55056 127 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 DLX1P56177 255 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 SPIBQ01892 262 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 CKAP4Q07065 602 aaKnown RBP2.59□□□□□ -1.99
VPS13A-210ENST00000471439 IL24Q13007 206 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 PSG7Q13046 419 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 CHIT1Q13231 466 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 PAFAH1B3Q15102 231 aaKnown RBP2.59□□□□□ -1.99
VPS13A-210ENST00000471439 TMEM176BQ3YBM2 270 aaPredicted RBP2.59□□□□□ -1.99
VPS13A-210ENST00000471439 TSPO2Q5TGU0 170 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 TMEM225Q6GV28 225 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 NPSR1Q6W5P4 371 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 ZNF695Q8IW36 515 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 SLC35F2Q8IXU6 374 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 MS4A6EQ96DS6 147 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 ARHGDIGQ99819 225 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 CRACR2AQ9BSW2 395 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 ALX4Q9H161 411 aaPredicted RBP2.59□□□□□ -1.99
VPS13A-210ENST00000471439 TBK1Q9UHD2 729 aa2.59□□□□□ -1.99
VPS13A-210ENST00000471439 IGLV3-9A0A075B6K5 115 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 PSMB11A5LHX3 300 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 ZNF716A6NP11 495 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 E7ESA3 106 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 DCTN6O00399 190 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 PHYHO14832 338 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 FADS1O60427 444 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 FCMRO60667 390 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 ZNF780AO75290 641 aaPredicted RBP2.58□□□□□ -2
VPS13A-210ENST00000471439 SUPT7LO94864 414 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 DIRAS1O95057 198 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 ZNF35P13682 527 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 IMPDH1P20839 514 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 GCAP28676 217 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 EVI2BP34910 448 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 RPL22P35268 128 aaKnown RBP2.58□□□□□ -2
VPS13A-210ENST00000471439 FUSP35637 526 aaKnown RBP eCLIP2.58□□□□□ -2
VPS13A-210ENST00000471439 MAP3K8P41279 467 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 CRATP43155 626 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms